Clone Sequence Records
BO08060.3prime Sequence
854 bp (807 high quality bases) assembled on 2006-01-06
> BO08060.3prime
ATGGTCTAGAAAGCTTGCATATTTCAGATCGGTAAACTTGAATTTCAGAG
GAATATTGGGCTTGTACAAAAACCTGCACTTATATGGCTTTTCAGTGGAA
TAGTTATATTCAATATGGAAATTTCGCACCAAGTTGGCAACCGTGAGTTC
CATTTCAAGATCCACAATCCGTTTGCCCACACACATGCGTGGTCCGAATC
CGAACGGCAAGTAGATAAAGGCATTTAAGTCCTTGTTCATAAGGACATCC
GACTTGTCATCGTCCTTTCGGCGCAGCCAGCGTTCCGGGATGAATTCCTT
TGCCCGGGGATACAGTCGGTCGTCCTTAAGCAAAAAGCTGTTGGTCATCA
GAAGCTTGGTGCCCTTGGGGATTCGGTAGCCATCGAGGACAACATCAGCT
CCGGCGGATCGGGCGTTACCAAAGGTGACTGGATACAATCGAAGCGATTC
CTTGATGACCGCCCTGAGATACGGAAGGGATTTCATATCCTCCACGGTAA
ATTCGCTATGAAGCGAAGTTAGTTTGCTTAGAACTTCCTCCCTGAGTCTT
TGCTGCTTCTCCGGATTCTTGGCCAGATTGAGCAATATTCCAGAGATGGC
CGTACTGGTGGTATCAACTCCTCCCATCAGCATGTCCATGGCCATAACAA
CGGCGAGCTTTCTATCGATTTGCAGCAACTGCTCGAGAACACTTTTATGA
TCGTTTGAATCGCCTTGTGAAGATTTCCGGTCGATCCTTTCTATCGCCTG
ATTCACGTACATCGAACAGGTGTCGAAAATTTCATCCATGGCCCGACTGA
ACTTCTTGTAGGTGGGTGTGGGGATGTACCTATACAATGATGGTCTCACG
CCCA
BO08060.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4120-PA | 1575 | Cyp12c1-RA | 737..1572 | 854..19 | 4180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:32:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp12c1-RB | 1884 | CG4120-RB | 763..1598 | 854..19 | 4180 | 100 | Minus |
| Cyp12c1-RA | 1614 | CG4120-RA | 763..1598 | 854..19 | 4180 | 100 | Minus |
| Cyp12a4-RA | 1697 | CG6042-RA | 977..1136 | 695..536 | 200 | 75 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:32:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18684545..18685380 | 19..854 | 4180 | 100 | Plus |
| 3R | 32079331 | 3R | 19136355..19136439 | 695..611 | 185 | 81.2 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:32:24 has no hits.
BO08060.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:47 Download gff for
BO08060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4120-PA | 738..1575 | 15..853 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:32 Download gff for
BO08060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4120-PA | 738..1575 | 15..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:10:01 Download gff for
BO08060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp12c1-RA | 764..1606 | 10..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:48:46 Download gff for
BO08060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp12c1-RA | 764..1606 | 10..853 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:48:46 Download gff for
BO08060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18684537..18685379 | 10..853 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:10:01 Download gff for
BO08060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18677637..18678479 | 10..853 | 99 | | Plus |
BO08060.5prime Sequence
924 bp (861 high quality bases) assembled on 2006-01-06
> BO08060.5prime
GAAGTTATCAGTCGACATGTTGCGTCTCACAGTAAAGCACGGCCTGCGGG
CCAATTCCCAGCTGGCTGCCACCAGAAACCCAGATGCATCATCGTACGTC
CAGCAGCTGGAATCAGAATGGGAGGGCGCCAAACCCTTTACGGAACTTCC
CGGCCCGACACGCTGGCAATTGTTCCGCGGCTTCCAGAAGGGCGGTGAGT
ACCACCAACTGGGCATGGATGATGTGATGCGGCTGTACAAAAAGCAGTTC
GGCGACATATGCTTGATACCCGGATTATTCGGCATGCCATCCACTGTGTT
CACGTTCAATGTGGAAACCTTTGAGAAGGTCTATCGCACCGAAGGTCAGT
GGCCCGTCCGCGGTGGCGCCGAACCCGTCATCCACTACCGCAATAAGCGG
AAGGATGAGTTTTTCAAGAACTGCATGGGATTGTTCGGCAATGGCGCGGA
GTGGGGAAAGAATAGAAGTGCCGTGAATCCCGTCCTGATGCAGCACCGAA
ATGTTGCAATCTATCTGAAACCGATGCAGCGCGTCAACCGGCAGTTTGTG
AATCGCATCCGCGAGATTCGCGACAAGGAGTCCCAAGAAGTGCCCGGTGA
CTTTATGAACACCATCAACCACCTGACCTTCGAGTCAGTGGCGACAGTGG
CCCTTGACAGGGAATTGGGACTACTCCGGGAAGCCAACCCGCCGCCGGAG
GCTAGTAAACTGTTCAAGAATATCGAAGTCCTAATGGATTCCTTCTTCGA
CTTGGGCGTGAGACCATCATTGTATAGGTACATCCCCACACCCACCTACA
AGAAGTTCAGTCGGGCCATGGATGAAATTTTCGACACCTGTTCGATGTAC
GTGAATCAGGCGATAGAAAGGATCGACCCGGAATCTTCACAANGCGATTC
AAACGATCATAAAAGTGTTCTCGA
BO08060.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4120-PA | 1575 | Cyp12c1-RA | 1..908 | 17..924 | 4471 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp12c1-RB | 1884 | CG4120-RB | 26..934 | 16..924 | 4504 | 99.7 | Plus |
| Cyp12c1-RA | 1614 | CG4120-RA | 26..934 | 16..924 | 4504 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:33:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18685209..18685691 | 924..442 | 2374 | 99.4 | Minus |
| 3L | 28110227 | 3L | 18685869..18686294 | 441..16 | 2130 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:33:55 has no hits.
BO08060.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:48 Download gff for
BO08060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4120-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:34 Download gff for
BO08060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4120-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:13:46 Download gff for
BO08060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp12c1-RA | 18..933 | 7..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:20:03 Download gff for
BO08060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp12c1-RA | 18..933 | 7..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:20:03 Download gff for
BO08060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18685210..18685691 | 442..923 | 99 | <- | Minus |
| 3L | 18685869..18686302 | 7..441 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:13:46 Download gff for
BO08060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18678310..18678791 | 442..923 | 99 | <- | Minus |
| arm_3L | 18678969..18679402 | 7..441 | 99 | | Minus |
BO08060.complete Sequence
1606 bp (1606 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631033
> BO08060.complete
GAAGTTATCAGTCGACATGTTGCGTCTCACAGTAAAGCACGGCCTGCGGG
CCAATTCCCAGCTGGCTGCCACCAGAAACCCAGATGCATCATCGTACGTC
CAGCAGCTGGAATCAGAATGGGAGGGCGCCAAACCCTTTACGGAACTTCC
CGGCCCGACACGCTGGCAATTGTTCCGCGGCTTCCAGAAGGGCGGTGAGT
ACCACCAACTGGGCATGGATGATGTGATGCGGCTGTACAAAAAGCAGTTC
GGCGACATATGCTTGATACCCGGATTATTCGGCATGCCATCCACTGTGTT
CACGTTCAATGTGGAAACCTTTGAGAAGGTCTATCGCACCGAAGGTCAGT
GGCCCGTCCGCGGTGGCGCCGAACCCGTCATCCACTACCGCAATAAGCGG
AAGGATGAGTTTTTCAAGAACTGCATGGGATTGTTCGGCAATGGCGCGGA
GTGGGGAAAGAATAGAAGTGCCGTGAATCCCGTCCTGATGCAGCACCGAA
ATGTTGCAATCTATCTGAAACCGATGCAGCGCGTCAACCGGCAGTTTGTG
AATCGCATCCGCGAGATTCGCGACAAGGAGTCCCAAGAAGTGCCCGGTGA
CTTTATGAACACCATCAACCACCTGACCTTCGAGTCAGTGGCGACAGTGG
CCCTTGACAGGGAATTGGGACTACTCCGGGAAGCCAACCCGCCGCCGGAG
GCTAGTAAACTGTTCAAGAATATCGAAGTCCTAATGGATTCCTTCTTCGA
CTTGGGCGTGAGACCATCATTGTATAGGTACATCCCCACACCCACCTACA
AGAAGTTCAGTCGGGCCATGGATGAAATTTTCGACACCTGTTCGATGTAC
GTGAATCAGGCGATAGAAAGGATCGACCGGAAATCTTCACAAGGCGATTC
AAACGATCATAAAAGTGTTCTCGAGCAGTTGCTGCAAATCGATAGAAAGC
TCGCCGTTGTTATGGCCATGGACATGCTGATGGGAGGAGTTGATACCACC
AGTACGGCCATCTCTGGAATATTGCTCAATCTGGCCAAGAATCCGGAGAA
GCAGCAAAGACTCAGGGAGGAAGTTCTAAGCAAACTAACTTCGCTTCATA
GCGAATTTACCGTGGAGGATATGAAATCCCTTCCGTATCTCAGGGCGGTC
ATCAAGGAATCGCTTCGATTGTATCCAGTCACCTTTGGTAACGCCCGATC
CGCCGGAGCTGATGTTGTCCTCGATGGCTACCGAATCCCCAAGGGCACCA
AGCTTCTGATGACCAACAGCTTTTTGCTTAAGGACGACCGACTGTATCCC
CGGGCAAAGGAATTCATCCCGGAACGCTGGCTGCGCCGAAAGGACGATGA
CAAGTCGGATGTCCTTATGAACAAGGACTTAAATGCCTTTATCTACTTGC
CGTTCGGATTCGGACCACGCATGTGTGTGGGCAAACGGATTGTGGATCTT
GAAATGGAACTCACGGTTGCCAACTTGGTGCGAAATTTCCATATTGAATA
TAACTATTCCACTGAAAAGCCATATAAGTGCAGGTTTTTGTACAAGCCCA
ATATTCCTCTGAAATTCAAGTTTACCGATCTGAAATATGCAAGCTTTCTA
GACCAT
BO08060.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:22:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp12c1-RB | 1575 | CG4120-PB | 1..1572 | 17..1588 | 7860 | 100 | Plus |
| Cyp12c1-RA | 1575 | CG4120-PA | 1..1572 | 17..1588 | 7860 | 100 | Plus |
| Cyp12a4-RA | 1611 | CG6042-PA | 926..1085 | 912..1071 | 200 | 75 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp12c1-RB | 1884 | CG4120-RB | 26..1598 | 16..1588 | 7865 | 100 | Plus |
| Cyp12c1-RA | 1614 | CG4120-RA | 26..1598 | 16..1588 | 7865 | 100 | Plus |
| Cyp12a4-RA | 1697 | CG6042-RA | 977..1136 | 912..1071 | 200 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:21:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18684545..18685691 | 1588..442 | 5735 | 100 | Minus |
| 3L | 28110227 | 3L | 18685869..18686294 | 441..16 | 2130 | 100 | Minus |
| 3R | 32079331 | 3R | 19136355..19136439 | 912..996 | 185 | 81.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:21:59 has no hits.
BO08060.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:30 Download gff for
BO08060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp12c1-RA | 1..1575 | 17..1592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:42 Download gff for
BO08060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp12c1-RA | 18..1606 | 7..1597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:10 Download gff for
BO08060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp12c1-RA | 32..1598 | 22..1590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:30 Download gff for
BO08060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp12c1-RA | 18..1606 | 7..1597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:35 Download gff for
BO08060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp12c1-RA | 32..1598 | 22..1590 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:35 Download gff for
BO08060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18684543..18685691 | 442..1590 | 99 | <- | Minus |
| 3L | 18685869..18686288 | 22..441 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:10 Download gff for
BO08060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18677643..18678791 | 442..1590 | 99 | <- | Minus |
| arm_3L | 18678969..18679388 | 22..441 | 100 | | Minus |
BO08060.pep Sequence
Translation from 16 to 1606
> BO08060.pep
MLRLTVKHGLRANSQLAATRNPDASSYVQQLESEWEGAKPFTELPGPTRW
QLFRGFQKGGEYHQLGMDDVMRLYKKQFGDICLIPGLFGMPSTVFTFNVE
TFEKVYRTEGQWPVRGGAEPVIHYRNKRKDEFFKNCMGLFGNGAEWGKNR
SAVNPVLMQHRNVAIYLKPMQRVNRQFVNRIREIRDKESQEVPGDFMNTI
NHLTFESVATVALDRELGLLREANPPPEASKLFKNIEVLMDSFFDLGVRP
SLYRYIPTPTYKKFSRAMDEIFDTCSMYVNQAIERIDRKSSQGDSNDHKS
VLEQLLQIDRKLAVVMAMDMLMGGVDTTSTAISGILLNLAKNPEKQQRLR
EEVLSKLTSLHSEFTVEDMKSLPYLRAVIKESLRLYPVTFGNARSAGADV
VLDGYRIPKGTKLLMTNSFLLKDDRLYPRAKEFIPERWLRRKDDDKSDVL
MNKDLNAFIYLPFGFGPRMCVGKRIVDLEMELTVANLVRNFHIEYNYSTE
KPYKCRFLYKPNIPLKFKFTDLKYASFLDH
BO08060.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp12c1-PB | 524 | CG4120-PB | 1..524 | 1..524 | 2743 | 100 | Plus |
| Cyp12c1-PA | 524 | CG4120-PA | 1..524 | 1..524 | 2743 | 100 | Plus |
| Cyp12a4-PA | 536 | CG6042-PA | 38..534 | 32..522 | 1196 | 47.9 | Plus |
| Cyp12a5-PA | 536 | CG11821-PA | 38..534 | 32..522 | 1190 | 47.9 | Plus |
| Cyp12d1-d-PA | 521 | CG33503-PA | 19..520 | 18..523 | 1117 | 41 | Plus |
