Clone BO08061 Report

Search the DGRC for BO08061

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:80
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG13325-RA
Protein status:BO08061.pep: Imported from assembly
Sequenced Size:2125

Clone Sequence Records

BO08061.3prime Sequence

910 bp (808 high quality bases) assembled on 2006-01-06

> BO08061.3prime
ATGGTCTAGAAAGCTTGCATCTACAGTTGAAGTTGTAGGTTCCAGCAGAT
TTTCTGGGTCCCTAGGCTCCTTATCATCAATATGAGATGTCTGTTTTTCG
GTAGGAGAGATCTTTCCCTTTGGCCTTAGGAAAATGTCAAGTCCGCCAAT
TGGTGCCTCAATGAGCAGATGCATTGCATAGGAAAACAGCAAGGTGAACC
CTAGGGTCGACCAGAAGTTAAGCATCATTCCGTAATCCGAGAAGTATGTG
CTAGTCCTGGTACTCCGTGCGTTCATCTCCATGAAGAACATGTGCCATAT
AAAAACAGAATACGAAAGCCTGGAGAGTGGTTGCCATAGCGGAGAGGCGA
GGAAACTATTGGCCAGTCCTCCGTATCCCTGAACGCAGGCAAAGATCACC
CAGCAAAGGGCCAAAGCCCAGCCCACTCTGGTTAAAGTGTAGTAAAAAGA
CTCCGCCAAGGTGGACGCGTCAGGATCAGACCACTTGGACGGCGGATACA
GGGCAAAGATCGATGTAAAGATCATGGCCAGGCAGAGGATCCATCCTGAC
CACACGGACACCCAGCTAAGCTGGAACTTCTTCCCTCTGTTCAGATGCAG
GAAGTATCCGAAGAGGAATCCTATAAGCCAGGGTGTAGCATGTGTATGGG
TTGCATAGTACCCATCTCGCATGGCTTCTGGAGAGGCAGCCGTGATCATC
ATTGAATATCCGTTCACCATCATGGTGGCAAATAGACAGGCGGAAAGTAA
AATTATGAGAATGAAGATACCAGCAGCTGCTTTCTTGCCCCATTTGTAGA
GGGAGATCAACAGGATCGGCGAGATGATGTACAGCTGCATGTCCAGCGAC
AGATACCAGGATTGAGCTAGGCACTTGGCATCTGTGTAGTTATTCACGAA
GAGCAAAGTC

BO08061.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG13325-PA 2094 CG13325-RA 1200..2091 910..19 4460 100 Minus
CG10182-PA 2100 CG10182-RA 1560..1613 553..500 195 94.4 Minus
CG10182-PA 2100 CG10182-RA 1735..1790 378..323 155 91 Minus
CG14204-PA 2232 CG14204-RA 1307..1370 845..782 145 89 Minus
CG10182-PA 2100 CG10182-RA 1203..1229 910..884 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG13325-RD 2415 CG13325-RD 1223..2114 910..19 4460 100 Minus
CG13325-RC 2181 CG13325-RC 1223..2114 910..19 4460 100 Minus
CG13325-RB 3610 CG13325-RB 2652..3543 910..19 4460 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13124987..13125452 691..226 2330 100 Minus
2R 25286936 2R 13125506..13125713 226..19 1040 100 Minus
2R 25286936 2R 13124745..13124929 875..691 925 100 Minus
3R 32079331 3R 23587545..23587917 283..655 725 79.6 Plus
3R 32079331 3R 23596858..23597242 271..655 500 75.3 Plus
3R 32079331 3R 23593982..23594325 287..630 385 74.1 Plus
3R 32079331 3R 23588033..23588179 712..858 375 83.7 Plus
X 23542271 X 19585478..19585625 860..713 290 79.7 Minus
3R 32079331 3R 23590995..23591158 712..875 280 78 Plus
3R 32079331 3R 23590519..23590673 291..445 220 76.1 Plus
3R 32079331 3R 23594532..23594611 766..845 205 83.8 Plus
2R 25286936 2R 13124644..13124680 910..874 185 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:27:01 has no hits.

BO08061.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:48 Download gff for BO08061.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13325-PA 1200..2094 18..910 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:35 Download gff for BO08061.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13325-PA 1200..2094 18..910 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:10:40 Download gff for BO08061.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13325-RA 1974..2870 11..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:24 Download gff for BO08061.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13325-RB 2652..3548 11..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:24 Download gff for BO08061.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13124644..13124680 874..910 100 -> Minus
2R 13124747..13124928 692..873 100 -> Minus
2R 13124987..13125452 226..691 100 -> Minus
2R 13125507..13125718 11..225 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:10:40 Download gff for BO08061.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9012149..9012185 874..910 100 -> Minus
arm_2R 9012252..9012433 692..873 100 -> Minus
arm_2R 9012492..9012957 226..691 100 -> Minus
arm_2R 9013012..9013223 11..225 98   Minus

BO08061.5prime Sequence

589 bp (460 high quality bases) assembled on 2006-01-06

> BO08061.5prime
GAAGTTATCAGTCGACATGACGAACCAAGTGATAGTATTTCTACTGTGCG
GTTTTGTGATCATCAGTGCCGGGAATCCAAATAGTGACGATGTGTTACCG
CAGTTTCGGAATGTCAGGCAACTTAGGTCCTTGGGCATCGAATTTACCGA
ATACTTTCGAAATATTTCCACGCAAGATTTAGGCGGCTTGGAGTCCCAGT
TTTCGAGTGAAGATGATCTGCTGTGCCTCAACGATATGAAGGCGCTGATG
ACAGGACTTGGAAGTGCTGAGTACTGGGCGTTGAAAATGATCGATGCCTG
GGGGTCCATTCCATCGGGACTACTCGCCGGTAATTCGTATGACCTGGGCA
ACTTTGACGAGTGTCTGAACATCAGAAAGGAGATCGGCCAGGAGAGAACT
ATTCAAGGAAAGTACTGCTTCCTCTCGGTATCCCCTGCCAAAATCCTGGG
GATCGAAACAAAGCATAAGTAGCTTCAAAAACTGCCACCTTGCTTTTCTG
CATCCCTGCTCGGCGATCAACATGAATGCGGTTGTGGATCAATTGATGAT
GAAGTTACTCAATGTCAGTGTTCCAAGTTCAGCCATGAG

BO08061.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG13325-PA 2094 CG13325-RA 1..445 17..461 2225 100 Plus
CG13325-PA 2094 CG13325-RA 485..569 505..589 400 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13325-RD 2415 CG13325-RD 23..592 16..589 2710 98.6 Plus
CG13325-RC 2181 CG13325-RC 23..592 16..589 2710 98.6 Plus
CG13325-RB 3610 CG13325-RB 1452..2021 16..589 2710 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13123160..13123431 16..287 1360 100 Plus
2R 25286936 2R 13123495..13123792 288..589 1250 97.4 Plus
Blast to na_te.dros performed on 2015-02-11 17:56:05 has no hits.

BO08061.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:49 Download gff for BO08061.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13325-PA 1..569 17..589 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:36 Download gff for BO08061.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13325-PA 1..569 17..589 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:45:49 Download gff for BO08061.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13325-RA 771..1343 9..589 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:51 Download gff for BO08061.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13325-RB 1449..2021 9..589 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:51 Download gff for BO08061.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13123495..13123792 288..589 97   Plus
2R 13123157..13123431 9..287 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:45:49 Download gff for BO08061.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9010662..9010936 9..287 98 -> Plus
arm_2R 9011000..9011297 288..589 97   Plus

BO08061.complete Sequence

2125 bp assembled on 2010-02-24

GenBank Submission: KX798921

> BO08061.complete
GAAGTTATCAGTCGACATGACGAACCAAGTGATAGTATTTCTACTGTGCG
GTTTTGTGATCATCAGTGCCGGGAATCCAAATAGTGACGATGTGTTACCG
CAGTTTCGGAATGTCAGGCAACTTAGGTCCTTGGGCATCGAATTTACCGA
ATACTTTCGAAATATTTCCACGCAAGATTTAGGCGGCTTGGAGTCCCAGT
TTTCGAGTGAAGATGATCTGCTGTGCCTCAACGATATGAAGGCGCTGATG
ACAGGACTTGGAAGTGCTGAGTACTGGGCGTTGAAAATGATCGATGCCTG
GGGGTCCATTCCATCGGGACTACTCGCCGGTAATTCGTATGACCTGGGCA
ACTTTGACGAGTGTCTGAACATCAGAAAGGAGATCGGCCAGGAGAGAACT
ATTCAAGGAAAGTACTGCTTCCTCTCGGTATCCCCTGCCAAAATCCTGGG
GATCGAAACAAGCATAGGTAGCTTCAGAACTGCCACTTGCTTTCCTGCAT
CCTGCTCGGCGATCAACATGAATGCGTTTGTGGATCAATTGATGATGAAG
TTACTCAATGTCAGTGTTCCAAGTTCAGCCATGAGAATCAGTGAAGGCAG
CTGTCAGACCAGTGATAGTGAGCCCTGGGATGCCCTCACCATTTTTATGA
TAGTTATTTTATCCTTAATGAGTTTCATAGTGGCATTATCTACTCTGTGG
GACTACTTTCTAGTCAAAGATCAGGATCAGCTTCCGGCCATTGTGAAGAT
CTGTTCAGCCCGGTCCAATTCTCGAGCCCTATTTCGCGTTGTAGAAAGCC
ATTCGAATCCGAATGTAATCGACTGCCTTCATGGAATTCGCTGCATGTCC
CTGATTTGGGTGATTACATGCCATCAGTACTCAGTCACTCTTATTTCGCC
ACACATCAATTTGTTCCGTGCCGCAACGTGGGTGGAAAAACCATTTGCCA
GTTTTATTCTGCATGGCTTCATATCCGTGGACTCGTTTCTAGTGATTGGC
GGCTTGTTAGTGGCACTGATTCCATTGCGATTAATGGATAAGACCAAAGG
CAAACTTAATGTGCCAATGATGTATTTACATCGCTTAATACGCATCGCTC
CACTTCTGGCAATGGCCATAGTGGTCCACATGAAGCTGATGCCCTTGATA
TCAAGTGGGCCACTCTTTGTAGGTGGTTATATAGGTAATTCGGCTTGCAA
GGCTGGTTGGTATTGGACTTTGCTCTTCGTGAATAACTACACAGATGCCA
AGTGCCTAGCTCAATCCTGGTATCTGTCGCTGGACATGCAGCTGTACATC
ATCTCGCCGATCCTGTTGATCTCCCTCTACAAATGGGGCAAGAAAGCAGC
TGCTGGTATCTTCATTCTCATAATTTTACTTTCCGCCTGTCTATTTGCCA
CCATGATGGTGAACGGATATTCAATGATGATCACGGCTGCCTCTCCAGAA
GCCATGCGAGATGGGTACTATGCAACCCATACACATGCTACACCCTGGCT
TATAGGATTCCTCTTCGGATACTTCCTGCATCTGAACAGAGGGAAGAAGT
TCCAGCTTAGCTGGGTGTCCGTGTGGTCAGGATGGATCCTCTGCCTGGCC
ATGATCTTTACATCGATCTTTGCCCTGTATCCGCCGTCCAAGTGGTCTGA
TCCTGACGCGTCCACCTTGGCGGAGTCTTTTTACTACACTTTAACCAGAG
TGGGCTGGGCTTTGGCCCTTTGCTGGGTGATCTTTGCCTGCGTTCAGGGA
TACGGAGGACTGGCCAATAGTTTCCTCGCCTCTCCGCTATGGCAACCACT
CTCCAGGCTTTCGTATTCTGTTTTTATATGGCACATGTTCTTCATGGAGA
TGAACGCACGGAGTACCAGGACTAGCACATACTTCTCGGATTACGGAATG
ATGCTTAACTTCTGGTCGACCCTAGGGTTCACCTTGCTGTTTTCCTATGC
AATGCATCTGCTCATTGAGGCACCAATTGGCGGACTTGACATTTTCCTAA
GGCCAAAGGGAAAGATCTCTCCTACCGAAAAACAGACATCTCATATTGAT
GATAAGGAGCCTAGGGACCCAGAAAATCTGCTGGAACCTACAACTTCAAC
TGTAGATGCAAGCTTTCTAGACCAT

BO08061.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG13325-RD 2094 CG13325-PD 1..2091 17..2107 10455 100 Plus
CG13325-RC 2094 CG13325-PC 1..2091 17..2107 10455 100 Plus
CG13325-RB 2094 CG13325-PB 1..2091 17..2107 10455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13325-RD 2415 CG13325-RD 23..2114 16..2107 10460 100 Plus
CG13325-RC 2181 CG13325-RC 23..2114 16..2107 10460 100 Plus
CG13325-RB 3610 CG13325-RB 1452..3543 16..2107 10460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13124987..13125452 1435..1900 2330 100 Plus
2R 25286936 2R 13123495..13123858 288..651 1820 100 Plus
2R 25286936 2R 13123160..13123431 16..287 1360 100 Plus
2R 25286936 2R 13124470..13124680 1042..1252 1055 100 Plus
2R 25286936 2R 13125506..13125713 1900..2107 1040 100 Plus
2R 25286936 2R 13124042..13124245 725..928 1020 100 Plus
2R 25286936 2R 13124745..13124929 1251..1435 925 100 Plus
3R 32079331 3R 23587545..23587917 1843..1471 725 79.6 Minus
2R 25286936 2R 13124301..13124415 928..1042 575 100 Plus
3R 32079331 3R 23596858..23597242 1855..1471 500 75.3 Minus
3R 32079331 3R 23593982..23594325 1839..1496 385 74.1 Minus
3R 32079331 3R 23588033..23588179 1414..1268 375 83.7 Minus
2R 25286936 2R 13123910..13123983 652..725 370 100 Plus
X 23542271 X 19585478..19585625 1266..1413 290 79.7 Plus
3R 32079331 3R 23590995..23591158 1414..1251 280 78 Minus
X 23542271 X 19588286..19588397 1362..1251 245 81.2 Minus
3R 32079331 3R 23590519..23590673 1835..1681 220 76.1 Minus
3R 32079331 3R 23591754..23591862 862..754 215 79.8 Minus
3R 32079331 3R 23588263..23588462 1242..1043 205 73.5 Minus
3R 32079331 3R 23588526..23588638 1040..928 205 78.8 Minus
3R 32079331 3R 23588771..23588904 861..728 205 76.9 Minus
3R 32079331 3R 23594532..23594611 1360..1281 205 83.8 Minus
X 23542271 X 19587794..19587891 1818..1721 205 80.6 Minus
X 23542271 X 19594927..19595015 1721..1809 190 80.9 Plus
X 23542271 X 19594363..19594456 1251..1344 185 79.8 Plus
Blast to na_te.dros performed on 2014-11-28 04:30:35 has no hits.

BO08061.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-24 09:36:52 Download gff for BO08061.complete
Subject Subject Range Query Range Percent Splice Strand
CG13325-RA 775..2865 17..2109 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:43 Download gff for BO08061.complete
Subject Subject Range Query Range Percent Splice Strand
CG13325-RA 775..2865 17..2109 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:36 Download gff for BO08061.complete
Subject Subject Range Query Range Percent Splice Strand
CG13325-RB 1453..3543 17..2109 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:36 Download gff for BO08061.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13123161..13123431 17..287 100 -> Plus
2R 13123495..13123858 288..651 100 -> Plus
2R 13123910..13123983 652..725 100 -> Plus
2R 13124043..13124245 726..928 100 -> Plus
2R 13124302..13124414 929..1041 100 -> Plus
2R 13124470..13124680 1042..1252 100 -> Plus
2R 13124747..13124928 1253..1434 100 -> Plus
2R 13124987..13125452 1435..1900 100 -> Plus
2R 13125507..13125713 1901..2109 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:43 Download gff for BO08061.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9011415..9011488 652..725 100 -> Plus
arm_2R 9010666..9010936 17..287 100 -> Plus
arm_2R 9011000..9011363 288..651 100 -> Plus
arm_2R 9011548..9011750 726..928 100 -> Plus
arm_2R 9011807..9011919 929..1041 100 -> Plus
arm_2R 9011975..9012185 1042..1252 100 -> Plus
arm_2R 9012252..9012433 1253..1434 100 -> Plus
arm_2R 9012492..9012957 1435..1900 100 -> Plus
arm_2R 9013012..9013218 1901..2109 99   Plus

BO08061.pep Sequence

Translation from 16 to 2125

> BO08061.pep
MTNQVIVFLLCGFVIISAGNPNSDDVLPQFRNVRQLRSLGIEFTEYFRNI
STQDLGGLESQFSSEDDLLCLNDMKALMTGLGSAEYWALKMIDAWGSIPS
GLLAGNSYDLGNFDECLNIRKEIGQERTIQGKYCFLSVSPAKILGIETSI
GSFRTATCFPASCSAINMNAFVDQLMMKLLNVSVPSSAMRISEGSCQTSD
SEPWDALTIFMIVILSLMSFIVALSTLWDYFLVKDQDQLPAIVKICSARS
NSRALFRVVESHSNPNVIDCLHGIRCMSLIWVITCHQYSVTLISPHINLF
RAATWVEKPFASFILHGFISVDSFLVIGGLLVALIPLRLMDKTKGKLNVP
MMYLHRLIRIAPLLAMAIVVHMKLMPLISSGPLFVGGYIGNSACKAGWYW
TLLFVNNYTDAKCLAQSWYLSLDMQLYIISPILLISLYKWGKKAAAGIFI
LIILLSACLFATMMVNGYSMMITAASPEAMRDGYYATHTHATPWLIGFLF
GYFLHLNRGKKFQLSWVSVWSGWILCLAMIFTSIFALYPPSKWSDPDAST
LAESFYYTLTRVGWALALCWVIFACVQGYGGLANSFLASPLWQPLSRLSY
SVFIWHMFFMEMNARSTRTSTYFSDYGMMLNFWSTLGFTLLFSYAMHLLI
EAPIGGLDIFLRPKGKISPTEKQTSHIDDKEPRDPENLLEPTTSTVDASF
LDH

BO08061.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG13325-PD 697 CG13325-PD 1..697 1..697 3662 100 Plus
CG13325-PC 697 CG13325-PC 1..697 1..697 3662 100 Plus
CG13325-PB 697 CG13325-PB 1..697 1..697 3662 100 Plus
CG13325-PA 697 CG13325-PA 1..697 1..697 3662 100 Plus
CG10182-PA 699 CG10182-PA 1..695 1..695 2518 67.1 Plus