Clone BO08062 Report

Search the DGRC for BO08062

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:80
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG42322-RF
Protein status:BO08062.pep: validated full length
Sequenced Size:1768

Clone Sequence Records

BO08062.3prime Sequence

950 bp (821 high quality bases) assembled on 2006-01-06

> BO08062.3prime
ATGGTCTAGAAAGCTTGCGCTTATATGGTGCGTGCGCGTGATGTGCCGCT
GCGCATATCTGGTGGACGGTCCCGTGACTATAGCATCTCGTTTACAAAGC
GCTGGCCTACCGCTCGCATTGTGACCCAGCATTATGATGCTTCGCAACAA
TCGCGTTATATAGTCTGGCCAGTTGGCGGGAAACATGACGAGGAAAAATC
CGATGCCAATCAGGATAACTCCGGCCAGTTTCATGCCAGCAAAGTTCGCA
CTGTATAGTATGACATCGAGGGCGCCAGAAACGGGCACAGCCGTAATCAG
ACCCAATGTCACAAACATGTTGTACGTAACGGCGGCACTGAACTGCATCA
GAACGTGGAAAACGAGGAGCAGGAGGCTCGCCGCGAACAGCAGGTTCCAG
GGTATGCTCTCCGAGGTGAGGCTTTCCGTGCCAGTCAGGTAGAGTCCCAG
CACTACGGGCCACAGCAGCAGGGCGTTGAGGAAGCCGAGGGCGGTGAATA
TGAAGGCGATTTGGCTCACCGGCGGATCGCCCATCACCTTGCGGAACATA
ACCCTAAACACGGCATAGCCAGCTCCAGCCAATGTGGCCAAGACCACGCC
GCTCAGGGTTCGGCTTTCCGTAATTCCATCCATATAGGCTAGCAACGCTA
TTCCTGTGTCGCAAAGTATAATGGCCACGATTCTAACGCCCACGAACTGC
TCGTGCAGGATCACCCAGGATAGCAGGTACACGCATGCCACGTTGGTGGC
GAACAGGGCCAGGGCATCCGTGGCGTAGAGGACGTGCAGGGACAGGGTGT
ACAGGTAGGTGGTGACCAGCCACAAAATGCAGAAGCAGAGGCAGCGATTG
AGGAAGCGACCCACTGTGAAGCCGCGCTCCCGGAATCCTCGCAGCACGTC
GCCAAGGATGTCGCTCAGCTTCTCGCACTTGCGGGTGGAGACCAGACCCA

BO08062.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31203-PA 1737 CG31203-RA 803..1734 950..19 4660 100 Minus
CG31203-PD 1737 CG31203-RD 803..1734 950..19 4660 100 Minus
CG31203-PE 1737 CG31203-RE 803..1734 950..19 4660 100 Minus
CG31203-PB 1737 CG31203-RB 803..1734 950..19 4660 100 Minus
CG31203-PC 1095 CG31203-RC 161..1092 950..19 4660 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG42322-RD 2049 CG42322-RD 1079..2010 950..19 4660 100 Minus
CG42322-RM 3269 CG42322-RM 1107..2038 950..19 4660 100 Minus
CG42322-RL 3534 CG42322-RL 1079..2010 950..19 4660 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20749468..20749658 553..363 955 100 Minus
3R 32079331 3R 20747836..20748015 861..682 900 100 Minus
3R 32079331 3R 20749248..20749378 681..551 655 100 Minus
3R 32079331 3R 20750224..20750354 273..143 655 100 Minus
3R 32079331 3R 20753507..20753602 114..19 480 100 Minus
3R 32079331 3R 20747683..20747774 950..859 460 100 Minus
3R 32079331 3R 20749740..20749830 363..273 455 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:30:16 has no hits.

BO08062.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:50 Download gff for BO08062.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31203-PD 804..1737 15..949 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:38 Download gff for BO08062.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31203-PC 162..1095 15..949 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:10:43 Download gff for BO08062.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42322-RL 1080..2018 10..949 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:44 Download gff for BO08062.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42322-RL 1080..2018 10..949 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:44 Download gff for BO08062.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20747684..20747772 861..949 100 -> Minus
3R 20747837..20748015 682..860 100 -> Minus
3R 20749248..20749376 553..681 100 -> Minus
3R 20749469..20749658 363..552 100 -> Minus
3R 20749741..20749830 273..362 100 -> Minus
3R 20750225..20750354 143..272 100 -> Minus
3R 20752346..20752375 113..142 100 -> Minus
3R 20753509..20753610 10..112 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:10:43 Download gff for BO08062.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16573406..16573494 861..949 100 -> Minus
arm_3R 16573559..16573737 682..860 100 -> Minus
arm_3R 16574970..16575098 553..681 100 -> Minus
arm_3R 16575191..16575380 363..552 100 -> Minus
arm_3R 16575463..16575552 273..362 100 -> Minus
arm_3R 16575947..16576076 143..272 100 -> Minus
arm_3R 16578068..16578097 113..142 100 -> Minus
arm_3R 16579231..16579332 10..112 96   Minus

BO08062.5prime Sequence

946 bp (856 high quality bases) assembled on 2006-01-06

> BO08062.5prime
GAAGTTATCAGTCGACATGACGCGCGACGGCGAAATTCCAGCTATTTTCA
ATCCGAAAAGAGTGCGCACTCCTTCCGTGGTGGTCACCGGCGACTCCTCG
ACGAATGGACCGTACAGCAACAATAGCACCGGCGGGGCGGGAGCCAGCAG
CAGCACGGCAGTGGCCCCCGGTTCGTCTGCCCAAAACGGCGGCAGTGGCA
GCGGAGCAGCGGGCAGCTGCGGGTTCAGCAACGTGCTCACCTCGAGCAAT
CCGCAAATAACCCACCAAGACTCGATATCGTCGAGCCAACAGGACCCCAA
TGAGGTGGTCATCATCCCGGCGGACACACCAACGAGCGCACCGGGCAGCC
ACAATGCGGCGCACCACTTCGGAGGCGGCGACTCCAGCGACACCCAGACG
GAGCAGCAGCAAGCCAACGGGCACGGCGAGGAGTCCGAGCTTCGCTTCCG
AAAGTTGCAGGCCTGCAAGGAGTCATGCTGCTCCGAACTGGCCCGGAAGA
TGTACTTCGGAGTGTGCGTGACCATCCTGATGACCGCGTCGTGGGTGGGG
GCCACCCACTGCATTAAGTACATGTACAAGTACCGTGCTCCGTACGACGA
CTTGCTGAACGACGACCAGGACACGTCCTCGAGCCGCGCGGACCTGAGCA
CGGAGCTGGAGGATATACTGGCCATCAGCGACTCGTCGCTGCACCACGTC
GAGGACGCCACCGAGATGTTCAACATACCACCGCGCCAGCCGGTCTACTT
CAGCGCCCCCTTCTTCGCCGCCTGGTTCTTCACCAACTTCTCGCTGCTCT
TCTTCCCCATCTACCTGCTGGGTCTGGTCTCCACCCGCAAGTGCGAGAAG
CTGAGCGACATCCTTGGCGACGTGCTGCGAGGATTCCGGGAGCGCGGCTT
CACAGTGGGTCGCTTCCCTCATCGCTGCCTCTGCTTCTGCATTTTT

BO08062.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG31203-PA 1737 CG31203-RA 1..901 17..917 4505 100 Plus
CG31203-PD 1737 CG31203-RD 1..901 17..917 4505 100 Plus
CG31203-PE 1737 CG31203-RE 1..901 17..917 4505 100 Plus
CG31203-PB 1737 CG31203-RB 1..901 17..917 4505 100 Plus
CG31203-PC 1095 CG31203-RC 46..259 704..917 1070 100 Plus
CG31203-PC 1095 CG31203-RC 1..46 17..62 230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG42322-RN 3657 CG42322-RN 276..1205 16..945 4605 99.8 Plus
CG42322-RJ 3627 CG42322-RJ 276..1205 16..945 4605 99.8 Plus
CG42322-RI 3614 CG42322-RI 263..1192 16..945 4605 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20746820..20747303 16..499 2420 100 Plus
3R 32079331 3R 20747362..20747774 498..910 2065 100 Plus
Blast to na_te.dros performed 2015-02-13 16:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 155..200 115..160 122 73.9 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9185..9230 115..160 122 73.9 Plus

BO08062.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:51 Download gff for BO08062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31203-PD 1..929 17..946 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:39 Download gff for BO08062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31203-PB 1..929 17..946 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:13:47 Download gff for BO08062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42322-RD 269..1205 7..946 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:20:21 Download gff for BO08062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42322-RI 256..1192 7..946 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:20:21 Download gff for BO08062.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20746813..20747303 7..499 99 -> Plus
3R 20747364..20747772 500..908 100 -> Plus
3R 20747837..20747873 909..946 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:13:47 Download gff for BO08062.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16572535..16573025 7..499 99 -> Plus
arm_3R 16573086..16573494 500..908 100 -> Plus
arm_3R 16573559..16573595 909..946 92   Plus

BO08062.complete Sequence

1768 bp (1768 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631034

> BO08062.complete
GAAGTTATCAGTCGACATGACGCGCGACGGCGAAATTCCAGCTATTTTCA
ATCCGAAAAGAGTGCGCACTCCTTCCGTGGTGGTCACCGGCGACTCCTCG
ACGAATGGACCGTACAGCAACAATAGCACCGGCGGGGCGGGAGCCAGCAG
CAGCACGGCAGTGGCCCCCGGTTCGTCTGCCCAAAACGGCGGCAGTGGCA
GCGGAGCAGCGGGCAGCTGCGGGTTCAGCAACGTGCTCACCTCGAGCAAT
CCGCAAATAACCCACCAAGACTCGATATCGTCGAGCCAACAGGACCCCAA
TGAGGTGGTCATCATCCCGGCGGACACACCAACGAGCGCACCGGGCAGCC
ACAATGCGGCGCACCACTTCGGAGGCGGCGACTCCAGCGACACCCAGACG
GAGCAGCAGCAAGCCAACGGGCACGGCGAGGAGTCCGAGCTTCGCTTCCG
AAAGTTGCAGGCCTGCAAGGAGTCATGCTGCTCCGAACTGGCCCGGAAGA
TGTACTTCGGAGTGTGCGTGACCATCCTGATGACCGCGTCGTGGGTGGGG
GCCACCCACTGCATTAAGTACATGTACAAGTACCGTGCTCCGTACGACGA
CTTGCTGAACGACGACCAGGACACGTCCTCGAGCCGCGCGGACCTGAGCA
CGGAGCTGGAGGATATACTGGCCATCAGCGACTCGTCGCTGCACCACGTC
GAGGACGCCACCGAGATGTTCAACATACCACCGCGCCAGCCGGTCTACTT
CAGCGCCCCCTTCTTCGCCGCCTGGTTCTTCACCAACTTCTCGCTGCTCT
TCTTCCCCATCTACCTGCTGGGTCTGGTCTCCACCCGCAAGTGCGAGAAG
CTGAGCGACATCCTTGGCGACGTGCTGCGAGGATTCCGGGAGCGCGGCTT
CACAGTGGGTCGCTTCCTCAATCGCTGCCTCTGCTTCTGCATTTTGTGGC
TGGTCACCACCTACCTGTACACCCTGTCCCTGCACGTCCTCTACGCCACG
GATGCCCTGGCCCTGTTCGCCACCAACGTGGCATGCGTGTACCTGCTATC
CTGGGTGATCCTGCACGAGCAGTTCGTGGGCGTTAGAATCGTGGCCATTA
TACTTTGCGACACAGGAATAGCGTTGCTAGCCTATATGGATGGAATTACG
GAAAGCCGAACCCTGAGCGGCGTGGTCTTGGCCACATTGGCTGGAGCTGG
CTATGCCGTGTTTAGGGTTATGTTCCGCAAGGTGATGGGCGATCCGCCGG
TGAGCCAAATCGCCTTCATATTCACCGCCCTCGGCTTCCTCAACGCCCTG
CTGCTGTGGCCCGTAGTGCTGGGACTCTACCTGACTGGCACGGAAAGCCT
CACCTCGGAGAGCATACCCTGGAACCTGCTGTTCGCGGCGAGCCTCCTGC
TCCTCGTTTTCCACGTTCTGATGCAGTTCAGTGCCGCCGTTACGTACAAC
ATGTTTGTGACATTGGGTCTGATTACGGCTGTGCCCGTTTCTGGCGCCCT
CGATGTCATACTATACAGTGCGAACTTTGCTGGCATGAAACTGGCCGGAG
TTATCCTGATTGGCATCGGATTTTTCCTCGTCATGTTTCCCGCCAACTGG
CCAGACTATATAACGCGATTGTTGCGAAGCATCATAATGCTGGGTCACAA
TGCGAGCGGTAGGCCAGCGCTTTGTAAACGAGATGCTATAGTCACGGGAC
CGTCCACCAGATATGCGCAGCGGCACATCACGCGCACGCACCATATAAGC
GCAAGCTTTCTAGACCAT

BO08062.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG42322-RD 1737 CG42322-PD 1..1734 17..1750 8670 100 Plus
CG42322-RM 1737 CG42322-PM 1..1734 17..1750 8670 100 Plus
CG42322-RL 1737 CG42322-PL 1..1734 17..1750 8670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG42322-RD 2049 CG42322-RD 276..2010 16..1750 8675 100 Plus
CG42322-RM 3269 CG42322-RM 304..2038 16..1750 8675 100 Plus
CG42322-RL 3534 CG42322-RL 276..2010 16..1750 8675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20746820..20747303 16..499 2420 100 Plus
3R 32079331 3R 20747362..20747774 498..910 2065 100 Plus
3R 32079331 3R 20749468..20749658 1216..1406 955 100 Plus
3R 32079331 3R 20747836..20748015 908..1087 900 100 Plus
3R 32079331 3R 20749248..20749378 1088..1218 655 100 Plus
3R 32079331 3R 20750224..20750354 1496..1626 655 100 Plus
3R 32079331 3R 20753507..20753602 1655..1750 480 100 Plus
3R 32079331 3R 20749740..20749830 1406..1496 455 100 Plus
Blast to na_te.dros performed 2014-11-27 14:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 155..200 115..160 122 73.9 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9185..9230 115..160 122 73.9 Plus

BO08062.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:34 Download gff for BO08062.complete
Subject Subject Range Query Range Percent Splice Strand
CG42322-RD 1..1737 17..1754 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:11 Download gff for BO08062.complete
Subject Subject Range Query Range Percent Splice Strand
CG42322-RD 263..2012 7..1759 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:48 Download gff for BO08062.complete
Subject Subject Range Query Range Percent Splice Strand
CG42322-RL 277..2010 17..1752 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:35 Download gff for BO08062.complete
Subject Subject Range Query Range Percent Splice Strand
CG42322-RD 263..2012 7..1759 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:45 Download gff for BO08062.complete
Subject Subject Range Query Range Percent Splice Strand
CG42322-RL 277..2010 17..1752 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:45 Download gff for BO08062.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20753509..20753602 1657..1752 97   Plus
3R 20749741..20749830 1407..1496 100 -> Plus
3R 20750225..20750354 1497..1626 100 -> Plus
3R 20752346..20752375 1627..1656 100 -> Plus
3R 20747837..20748015 909..1087 100 -> Plus
3R 20749248..20749376 1088..1216 100 -> Plus
3R 20749469..20749658 1217..1406 100 -> Plus
3R 20746821..20747303 17..499 100 -> Plus
3R 20747364..20747772 500..908 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:48 Download gff for BO08062.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16574970..16575098 1088..1216 100 -> Plus
arm_3R 16575191..16575380 1217..1406 100 -> Plus
arm_3R 16575463..16575552 1407..1496 100 -> Plus
arm_3R 16575947..16576076 1497..1626 100 -> Plus
arm_3R 16578068..16578097 1627..1656 100 -> Plus
arm_3R 16579231..16579324 1657..1752 97   Plus
arm_3R 16573559..16573737 909..1087 100 -> Plus
arm_3R 16572543..16573025 17..499 100 -> Plus
arm_3R 16573086..16573494 500..908 100 -> Plus

BO08062.pep Sequence

Translation from 16 to 1768

> BO08062.pep
MTRDGEIPAIFNPKRVRTPSVVVTGDSSTNGPYSNNSTGGAGASSSTAVA
PGSSAQNGGSGSGAAGSCGFSNVLTSSNPQITHQDSISSSQQDPNEVVII
PADTPTSAPGSHNAAHHFGGGDSSDTQTEQQQANGHGEESELRFRKLQAC
KESCCSELARKMYFGVCVTILMTASWVGATHCIKYMYKYRAPYDDLLNDD
QDTSSSRADLSTELEDILAISDSSLHHVEDATEMFNIPPRQPVYFSAPFF
AAWFFTNFSLLFFPIYLLGLVSTRKCEKLSDILGDVLRGFRERGFTVGRF
LNRCLCFCILWLVTTYLYTLSLHVLYATDALALFATNVACVYLLSWVILH
EQFVGVRIVAIILCDTGIALLAYMDGITESRTLSGVVLATLAGAGYAVFR
VMFRKVMGDPPVSQIAFIFTALGFLNALLLWPVVLGLYLTGTESLTSESI
PWNLLFAASLLLLVFHVLMQFSAAVTYNMFVTLGLITAVPVSGALDVILY
SANFAGMKLAGVILIGIGFFLVMFPANWPDYITRLLRSIIMLGHNASGRP
ALCKRDAIVTGPSTRYAQRHITRTHHISASFLDH

BO08062.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG42322-PD 578 CG31203-PE 1..578 1..578 2992 100 Plus
CG42322-PM 578 CG42322-PM 1..578 1..578 2992 100 Plus
CG42322-PL 578 CG42322-PL 1..578 1..578 2992 100 Plus
CG42322-PJ 733 CG42322-PJ 1..581 1..578 2778 93.8 Plus
CG42322-PI 733 CG42322-PI 1..581 1..578 2778 93.8 Plus