Clone BO08064 Report

Search the DGRC for BO08064

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:80
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG10494-RB
Protein status:BO08064.pep: validated not full length
Sequenced Size:1366

Clone Sequence Records

BO08064.3prime Sequence

978 bp (820 high quality bases) assembled on 2006-01-06

> BO08064.3prime
ATGGTCTAGAAAGCTTGCCTTCGGTTGCAGCATTTCGCTGATCCTGCGCA
GGGTCTCCTCTCGATCTCGATGCATCAGTTCCGATACTTGTTCCAAAAAT
TGATGCTGCTGCTCGCGTTGCTGCCGCAAGAAGCTTTCGTTGGTAGTTTT
GATCTGCGCAAGCAGCTGCTTTTGACCTTCTATGATTGCAGTGAGTGCTT
CAATCGGCGTTGGTTCAGCCTCCATCTCGATGGCGTCCACGTAGTCCTCG
CTATCGGCTGCCGCTCTTAGGAGATCGCAGGTGGAGCTGGAGTTGTCGCT
GTCACTTTCCAGCGGAACGCTTGGTTTGCCTGGCGGCTTGAGAAAGGAAG
GCTTGCTGATGCGAATGAGCCTGCTGATGGCACTTTCTCTGTTCTCCCGC
GGCGCCTGAATCAGTTCATCGAAAAGCTCAAAGTGGCGAGGCAGAATGCG
TACATTATCTAGCCCGTGCTCCTTGGCCTCTCGATGACGCTTGCAGAGCA
GCCTTAGTTTATTGCGCAGCTGGTGTGGCGTGCGTTTGATGTCCTGCTTA
GCCAGGATGTTGGAAATGTGCACCAGGGTCTGGAAGTTGCGCTTCCTTGA
GCCATCCAAGGCGCGAAAGAAACCATTGTCCCGAATGATGAGTAGAAACG
AATCAACCTCTTCGTCTGTCCAAAAGTGCGCTCCGCTTCTCTGTGATGCA
TCACCCTCTTCCTCGTCACTGTCATTGAAATCACTATCGCTTGCGCTGCT
CAGATGGGCTTCCGCTTCAGCATCTGCGGCCGCCTCCTCTTCGGTGGGAT
CCAGGACCAGTCGCATCGCCTCAAAATGCTCGAACGTTTTCCCGTGCCGT
TCTTGACCTTGTTGTACAATCGCCGCAGCTGCTGGAACTTGATGCGCAGC
TTCTCAGCACCCTTGTGGCAGTTGCGTTTTGCCATCTCCTTGGACAGCAG
CTTGAAGAACTTGGCATTGCGCTTTTGC

BO08064.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG10494-PB 1335 CG10494-RB 508..1332 843..19 4125 100 Minus
CG10494-PA 1572 CG10494-RA 745..1569 843..19 4125 100 Minus
CG10494-PB 1335 CG10494-RB 372..509 978..841 665 99.2 Minus
CG10494-PA 1572 CG10494-RA 609..746 978..841 665 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10494-RA 1794 CG10494-RA 729..1689 978..19 4765 99.8 Minus
CG10494-RB 2160 CG10494-RB 714..1674 978..19 4765 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21517260..21517923 19..682 3320 100 Plus
2R 25286936 2R 21517981..21518279 681..978 1430 99.3 Plus
Blast to na_te.dros performed on 2015-02-04 20:34:51 has no hits.

BO08064.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:54 Download gff for BO08064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10494-PA 609..1572 15..978 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:43 Download gff for BO08064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10494-PA 609..1572 15..978 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:27:28 Download gff for BO08064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10494-RB 714..1677 15..978 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:51:58 Download gff for BO08064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10494-RB 714..1677 15..978 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:51:58 Download gff for BO08064.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21517257..21517921 15..680 99 <- Plus
2R 21517981..21518279 681..978 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:27:28 Download gff for BO08064.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17404762..17405426 15..680 99 <- Plus
arm_2R 17405486..17405784 681..978 99   Plus

BO08064.5prime Sequence

871 bp (826 high quality bases) assembled on 2006-01-06

> BO08064.5prime
GAAGTTATCAGTCGACATGGTGTCCAGAGAAATGGCCCGGCGGAACTGCC
CCAAGAGTCCAAAGCATCTGAGAGTCAAGTTCCATCAGATGCGGCGTCAG
TATGCGAGAGCTCGGAATGGCGGCGAACCATTCGAGCACTTTGAGGCGGT
GCACGAGTTGATGCAGGGAGAAGATGTATCTGATCTGGATGAAGAGGCGC
TAGAGAGTGACAGCGATATGGAGGCCGACGAGGACCAGTCCGGCATGATC
TCAGAAACCGAAGGGGACGATGCTTTGGATGCCTCAGGATCTTCAGTTAA
CATCGTCGCCCGCTGCAAGTGGGCAGAGGGCGAAGTGGACCTCCTCCTAG
ACCTGATCCACACACTTGGACTGCGAGCAGCTTTGCTGCAAAAGCGCAAT
GCCAAGGTCTTCAAGCTGCTGTCCAAGGAGATGGCAAAACGCAACTGCCA
CAAGGGTGCTGAGAAGCTGCGCATCAAGTTCCAGCAGCTGCGGCGATTGT
ACAACAAGGTCAAGAACGGCACGGGGAAAACGTTCGAGCATTTTGAGGCG
ATGCGACTGGTCCTGGATCCCACCGAAGAGGAGGCGGCCGCAGATGCTGA
AGCGGAAGCCCATCTGAGCAGCGCAAGCGATAGTGATTTCAATGACAGTG
ACGAGGAAGAGGGTGATGCATCACAGAGAAGCGGAGCGCACTTTTGGACA
GACGAAGAGGTTGATTCGTTTCTACTCATCATTCGGGACAATGGTTTCTT
TCGCGCCTTGGATGGCTCAAGGAAGCGCAACTTCCAGACCCTGGTGCACA
TTTCCAACATCCTGGCTAAGCAGGACATCAAACGCACGCCACACCAGCTG
CGCAATAAACTAAGGCTGCTC

BO08064.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10494-PB 1335 CG10494-RB 1..855 17..871 4275 100 Plus
CG10494-PA 1572 CG10494-RA 238..1092 17..871 4275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10494-RA 1794 CG10494-RA 358..1212 17..871 4275 100 Plus
CG10494-RB 2160 CG10494-RB 343..1197 17..871 4275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21517981..21518398 686..269 2090 100 Minus
2R 25286936 2R 21518457..21518709 269..17 1265 100 Minus
2R 25286936 2R 21517737..21517923 871..685 935 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:37:53 has no hits.

BO08064.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:55 Download gff for BO08064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10494-PA 234..1092 12..871 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:44 Download gff for BO08064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10494-PA 234..1092 12..871 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:59:32 Download gff for BO08064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10494-RB 339..1197 12..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:18:32 Download gff for BO08064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10494-RB 339..1197 12..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:18:32 Download gff for BO08064.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21517737..21517921 687..871 100 <- Minus
2R 21517981..21518397 270..686 100 <- Minus
2R 21518457..21518713 12..269 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:59:32 Download gff for BO08064.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17405242..17405426 687..871 100 <- Minus
arm_2R 17405486..17405902 270..686 100 <- Minus
arm_2R 17405962..17406218 12..269 99   Minus

BO08064.complete Sequence

1366 bp (1366 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631035

> BO08064.complete
GAAGTTATCAGTCGACATGGTGTCCAGAGAAATGGCCCGGCGGAACTGCC
CCAAGAGTCCAAAGCATCTGAGAGTCAAGTTCCATCAGATGCGGCGTCAG
TATGCGAGAGCTCGGAATGGCGGCGAACCATTCGAGCACTTTGAGGCGGT
GCACGAGTTGATGCAGGGAGAAGATGTATCTGATCTGGATGAAGAGGCGC
TAGAGAGTGACAGCGATATGGAGGCCGACGAGGACCAGTCCGGCATGATC
TCAGAAACCGAAGGGGACGATGCTTTGGATGCCTCAGGATCTTCAGTTAA
CATCGTCGCCCGCTGCAAGTGGGCAGAGGGCGAAGTGGACCTCCTCCTAG
ACCTGATCCACACACTTGGACTGCGAGCAGCTTTGCTGCAAAAGCGCAAT
GCCAAGGTCTTCAAGCTGCTGTCCAAGGAGATGGCAAAACGCAACTGCCA
CAAGGGTGCTGAGAAGCTGCGCATCAAGTTCCAGCAGCTGCGGCGATTGT
ACAACAAGGTCAAGAACGGCACGGGGAAAACGTTCGAGCATTTTGAGGCG
ATGCGACTGGTCCTGGATCCCACCGAAGAGGAGGCGGCCGCAGATGCTGA
AGCGGAAGCCCATCTGAGCAGCGCAAGCGATAGTGATTTCAATGACAGTG
ACGAGGAAGAGGGTGATGCATCACAGAGAAGCGGAGCGCACTTTTGGACA
GACGAAGAGGTTGATTCGTTTCTACTCATCATTCGGGACAATGGTTTCTT
TCGCGCCTTGGATGGCTCAAGGAAGCGCAACTTCCAGACCCTGGTGCACA
TTTCCAACATCCTGGCTAAGCAGGACATCAAACGCACGCCACACCAGCTG
CGCAATAAACTAAGGCTGCTCTGCAAGCGTCATCGAGAGGCCAAGGAGCA
CGGGCTAGATAATGTACGCATTCTGCCTCGCCACTTTGAGCTTTTCGATG
AACTGATTCAGGCGCCGCGGGAGAACAGAGAAAGTGCCATCAGCAGGCTC
ATTCGCATCAGCAAGCCTTCCTTTCTCAAGCCGCCAGGCAAACCAAGCGT
TCCGCTGGAAAGTGACAGCGACAACTCCAGCTCCACCTGCGATCTCCTAA
GAGCGGCAGCCGATAGCGAGGACTACGTGGACGCCATCGAGATGGAGGCT
GAACCAACGCCGATTGAAGCACTCACTGCAATCATAGAAGGTCAAAAGCA
GCTGCTTGCGCAGATCAAAACTACCAACGAAAGCTTCTTGCGGCAGCAAC
GCGAGCAGCAGCATCAATTTTTGGAACAAGTATCGGAACTGATGCATCGA
GATCGAGAGGAGACCCTGCGCAGGATCAGCGAAATGCTGCAACCGAAGGC
AAGCTTTCTAGACCAT

BO08064.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10494-RA 1572 CG10494-PA 238..1569 17..1348 6660 100 Plus
CG10494-RB 1335 CG10494-PB 1..1332 17..1348 6660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:53:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10494-RA 1794 CG10494-RA 358..1689 17..1348 6660 100 Plus
CG10494-RB 2160 CG10494-RB 343..1674 17..1348 6660 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21517260..21517923 1348..685 3320 100 Minus
2R 25286936 2R 21517981..21518398 686..269 2090 100 Minus
2R 25286936 2R 21518457..21518709 269..17 1265 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:53:52 has no hits.

BO08064.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:31 Download gff for BO08064.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RA 234..1572 12..1352 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:44 Download gff for BO08064.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RA 335..1673 12..1352 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:05 Download gff for BO08064.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RB 343..1674 17..1350 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:31 Download gff for BO08064.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RA 335..1673 12..1352 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:23 Download gff for BO08064.complete
Subject Subject Range Query Range Percent Splice Strand
CG10494-RB 343..1674 17..1350 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:23 Download gff for BO08064.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21517258..21517921 687..1350 99 <- Minus
2R 21517981..21518397 270..686 100 <- Minus
2R 21518457..21518709 17..269 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:05 Download gff for BO08064.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17404763..17405426 687..1350 99 <- Minus
arm_2R 17405486..17405902 270..686 100 <- Minus
arm_2R 17405962..17406214 17..269 100   Minus

BO08064.pep Sequence

Translation from 16 to 1366

> BO08064.pep
MVSREMARRNCPKSPKHLRVKFHQMRRQYARARNGGEPFEHFEAVHELMQ
GEDVSDLDEEALESDSDMEADEDQSGMISETEGDDALDASGSSVNIVARC
KWAEGEVDLLLDLIHTLGLRAALLQKRNAKVFKLLSKEMAKRNCHKGAEK
LRIKFQQLRRLYNKVKNGTGKTFEHFEAMRLVLDPTEEEAAADAEAEAHL
SSASDSDFNDSDEEEGDASQRSGAHFWTDEEVDSFLLIIRDNGFFRALDG
SRKRNFQTLVHISNILAKQDIKRTPHQLRNKLRLLCKRHREAKEHGLDNV
RILPRHFELFDELIQAPRENRESAISRLIRISKPSFLKPPGKPSVPLESD
SDNSSSTCDLLRAAADSEDYVDAIEMEAEPTPIEALTAIIEGQKQLLAQI
KTTNESFLRQQREQQHQFLEQVSELMHRDREETLRRISEMLQPKASFLDH

BO08064.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:44:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10494-PA 523 CG10494-PA 80..523 1..444 2265 100 Plus
CG10494-PB 444 CG10494-PB 1..444 1..444 2265 100 Plus
CG10494-PA 523 CG10494-PA 28..271 83..324 298 34.8 Plus