Clone Sequence Records
BO08064.3prime Sequence
978 bp (820 high quality bases) assembled on 2006-01-06
> BO08064.3prime
ATGGTCTAGAAAGCTTGCCTTCGGTTGCAGCATTTCGCTGATCCTGCGCA
GGGTCTCCTCTCGATCTCGATGCATCAGTTCCGATACTTGTTCCAAAAAT
TGATGCTGCTGCTCGCGTTGCTGCCGCAAGAAGCTTTCGTTGGTAGTTTT
GATCTGCGCAAGCAGCTGCTTTTGACCTTCTATGATTGCAGTGAGTGCTT
CAATCGGCGTTGGTTCAGCCTCCATCTCGATGGCGTCCACGTAGTCCTCG
CTATCGGCTGCCGCTCTTAGGAGATCGCAGGTGGAGCTGGAGTTGTCGCT
GTCACTTTCCAGCGGAACGCTTGGTTTGCCTGGCGGCTTGAGAAAGGAAG
GCTTGCTGATGCGAATGAGCCTGCTGATGGCACTTTCTCTGTTCTCCCGC
GGCGCCTGAATCAGTTCATCGAAAAGCTCAAAGTGGCGAGGCAGAATGCG
TACATTATCTAGCCCGTGCTCCTTGGCCTCTCGATGACGCTTGCAGAGCA
GCCTTAGTTTATTGCGCAGCTGGTGTGGCGTGCGTTTGATGTCCTGCTTA
GCCAGGATGTTGGAAATGTGCACCAGGGTCTGGAAGTTGCGCTTCCTTGA
GCCATCCAAGGCGCGAAAGAAACCATTGTCCCGAATGATGAGTAGAAACG
AATCAACCTCTTCGTCTGTCCAAAAGTGCGCTCCGCTTCTCTGTGATGCA
TCACCCTCTTCCTCGTCACTGTCATTGAAATCACTATCGCTTGCGCTGCT
CAGATGGGCTTCCGCTTCAGCATCTGCGGCCGCCTCCTCTTCGGTGGGAT
CCAGGACCAGTCGCATCGCCTCAAAATGCTCGAACGTTTTCCCGTGCCGT
TCTTGACCTTGTTGTACAATCGCCGCAGCTGCTGGAACTTGATGCGCAGC
TTCTCAGCACCCTTGTGGCAGTTGCGTTTTGCCATCTCCTTGGACAGCAG
CTTGAAGAACTTGGCATTGCGCTTTTGC
BO08064.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10494-PB | 1335 | CG10494-RB | 508..1332 | 843..19 | 4125 | 100 | Minus |
CG10494-PA | 1572 | CG10494-RA | 745..1569 | 843..19 | 4125 | 100 | Minus |
CG10494-PB | 1335 | CG10494-RB | 372..509 | 978..841 | 665 | 99.2 | Minus |
CG10494-PA | 1572 | CG10494-RA | 609..746 | 978..841 | 665 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:34:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10494-RA | 1794 | CG10494-RA | 729..1689 | 978..19 | 4765 | 99.8 | Minus |
CG10494-RB | 2160 | CG10494-RB | 714..1674 | 978..19 | 4765 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:34:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21517260..21517923 | 19..682 | 3320 | 100 | Plus |
2R | 25286936 | 2R | 21517981..21518279 | 681..978 | 1430 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:34:51 has no hits.
BO08064.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:54 Download gff for
BO08064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-PA | 609..1572 | 15..978 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:43 Download gff for
BO08064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-PA | 609..1572 | 15..978 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:27:28 Download gff for
BO08064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-RB | 714..1677 | 15..978 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:51:58 Download gff for
BO08064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-RB | 714..1677 | 15..978 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:51:58 Download gff for
BO08064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21517257..21517921 | 15..680 | 99 | <- | Plus |
2R | 21517981..21518279 | 681..978 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:27:28 Download gff for
BO08064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17404762..17405426 | 15..680 | 99 | <- | Plus |
arm_2R | 17405486..17405784 | 681..978 | 99 | | Plus |
BO08064.5prime Sequence
871 bp (826 high quality bases) assembled on 2006-01-06
> BO08064.5prime
GAAGTTATCAGTCGACATGGTGTCCAGAGAAATGGCCCGGCGGAACTGCC
CCAAGAGTCCAAAGCATCTGAGAGTCAAGTTCCATCAGATGCGGCGTCAG
TATGCGAGAGCTCGGAATGGCGGCGAACCATTCGAGCACTTTGAGGCGGT
GCACGAGTTGATGCAGGGAGAAGATGTATCTGATCTGGATGAAGAGGCGC
TAGAGAGTGACAGCGATATGGAGGCCGACGAGGACCAGTCCGGCATGATC
TCAGAAACCGAAGGGGACGATGCTTTGGATGCCTCAGGATCTTCAGTTAA
CATCGTCGCCCGCTGCAAGTGGGCAGAGGGCGAAGTGGACCTCCTCCTAG
ACCTGATCCACACACTTGGACTGCGAGCAGCTTTGCTGCAAAAGCGCAAT
GCCAAGGTCTTCAAGCTGCTGTCCAAGGAGATGGCAAAACGCAACTGCCA
CAAGGGTGCTGAGAAGCTGCGCATCAAGTTCCAGCAGCTGCGGCGATTGT
ACAACAAGGTCAAGAACGGCACGGGGAAAACGTTCGAGCATTTTGAGGCG
ATGCGACTGGTCCTGGATCCCACCGAAGAGGAGGCGGCCGCAGATGCTGA
AGCGGAAGCCCATCTGAGCAGCGCAAGCGATAGTGATTTCAATGACAGTG
ACGAGGAAGAGGGTGATGCATCACAGAGAAGCGGAGCGCACTTTTGGACA
GACGAAGAGGTTGATTCGTTTCTACTCATCATTCGGGACAATGGTTTCTT
TCGCGCCTTGGATGGCTCAAGGAAGCGCAACTTCCAGACCCTGGTGCACA
TTTCCAACATCCTGGCTAAGCAGGACATCAAACGCACGCCACACCAGCTG
CGCAATAAACTAAGGCTGCTC
BO08064.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10494-PB | 1335 | CG10494-RB | 1..855 | 17..871 | 4275 | 100 | Plus |
CG10494-PA | 1572 | CG10494-RA | 238..1092 | 17..871 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:37:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10494-RA | 1794 | CG10494-RA | 358..1212 | 17..871 | 4275 | 100 | Plus |
CG10494-RB | 2160 | CG10494-RB | 343..1197 | 17..871 | 4275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21517981..21518398 | 686..269 | 2090 | 100 | Minus |
2R | 25286936 | 2R | 21518457..21518709 | 269..17 | 1265 | 100 | Minus |
2R | 25286936 | 2R | 21517737..21517923 | 871..685 | 935 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:37:53 has no hits.
BO08064.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:55 Download gff for
BO08064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-PA | 234..1092 | 12..871 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:44 Download gff for
BO08064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-PA | 234..1092 | 12..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:59:32 Download gff for
BO08064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-RB | 339..1197 | 12..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:18:32 Download gff for
BO08064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-RB | 339..1197 | 12..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:18:32 Download gff for
BO08064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21517737..21517921 | 687..871 | 100 | <- | Minus |
2R | 21517981..21518397 | 270..686 | 100 | <- | Minus |
2R | 21518457..21518713 | 12..269 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:59:32 Download gff for
BO08064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17405242..17405426 | 687..871 | 100 | <- | Minus |
arm_2R | 17405486..17405902 | 270..686 | 100 | <- | Minus |
arm_2R | 17405962..17406218 | 12..269 | 99 | | Minus |
BO08064.complete Sequence
1366 bp (1366 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631035
> BO08064.complete
GAAGTTATCAGTCGACATGGTGTCCAGAGAAATGGCCCGGCGGAACTGCC
CCAAGAGTCCAAAGCATCTGAGAGTCAAGTTCCATCAGATGCGGCGTCAG
TATGCGAGAGCTCGGAATGGCGGCGAACCATTCGAGCACTTTGAGGCGGT
GCACGAGTTGATGCAGGGAGAAGATGTATCTGATCTGGATGAAGAGGCGC
TAGAGAGTGACAGCGATATGGAGGCCGACGAGGACCAGTCCGGCATGATC
TCAGAAACCGAAGGGGACGATGCTTTGGATGCCTCAGGATCTTCAGTTAA
CATCGTCGCCCGCTGCAAGTGGGCAGAGGGCGAAGTGGACCTCCTCCTAG
ACCTGATCCACACACTTGGACTGCGAGCAGCTTTGCTGCAAAAGCGCAAT
GCCAAGGTCTTCAAGCTGCTGTCCAAGGAGATGGCAAAACGCAACTGCCA
CAAGGGTGCTGAGAAGCTGCGCATCAAGTTCCAGCAGCTGCGGCGATTGT
ACAACAAGGTCAAGAACGGCACGGGGAAAACGTTCGAGCATTTTGAGGCG
ATGCGACTGGTCCTGGATCCCACCGAAGAGGAGGCGGCCGCAGATGCTGA
AGCGGAAGCCCATCTGAGCAGCGCAAGCGATAGTGATTTCAATGACAGTG
ACGAGGAAGAGGGTGATGCATCACAGAGAAGCGGAGCGCACTTTTGGACA
GACGAAGAGGTTGATTCGTTTCTACTCATCATTCGGGACAATGGTTTCTT
TCGCGCCTTGGATGGCTCAAGGAAGCGCAACTTCCAGACCCTGGTGCACA
TTTCCAACATCCTGGCTAAGCAGGACATCAAACGCACGCCACACCAGCTG
CGCAATAAACTAAGGCTGCTCTGCAAGCGTCATCGAGAGGCCAAGGAGCA
CGGGCTAGATAATGTACGCATTCTGCCTCGCCACTTTGAGCTTTTCGATG
AACTGATTCAGGCGCCGCGGGAGAACAGAGAAAGTGCCATCAGCAGGCTC
ATTCGCATCAGCAAGCCTTCCTTTCTCAAGCCGCCAGGCAAACCAAGCGT
TCCGCTGGAAAGTGACAGCGACAACTCCAGCTCCACCTGCGATCTCCTAA
GAGCGGCAGCCGATAGCGAGGACTACGTGGACGCCATCGAGATGGAGGCT
GAACCAACGCCGATTGAAGCACTCACTGCAATCATAGAAGGTCAAAAGCA
GCTGCTTGCGCAGATCAAAACTACCAACGAAAGCTTCTTGCGGCAGCAAC
GCGAGCAGCAGCATCAATTTTTGGAACAAGTATCGGAACTGATGCATCGA
GATCGAGAGGAGACCCTGCGCAGGATCAGCGAAATGCTGCAACCGAAGGC
AAGCTTTCTAGACCAT
BO08064.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:53:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10494-RA | 1572 | CG10494-PA | 238..1569 | 17..1348 | 6660 | 100 | Plus |
CG10494-RB | 1335 | CG10494-PB | 1..1332 | 17..1348 | 6660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:53:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10494-RA | 1794 | CG10494-RA | 358..1689 | 17..1348 | 6660 | 100 | Plus |
CG10494-RB | 2160 | CG10494-RB | 343..1674 | 17..1348 | 6660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21517260..21517923 | 1348..685 | 3320 | 100 | Minus |
2R | 25286936 | 2R | 21517981..21518398 | 686..269 | 2090 | 100 | Minus |
2R | 25286936 | 2R | 21518457..21518709 | 269..17 | 1265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:53:52 has no hits.
BO08064.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:31 Download gff for
BO08064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-RA | 234..1572 | 12..1352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:44 Download gff for
BO08064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-RA | 335..1673 | 12..1352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:05 Download gff for
BO08064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-RB | 343..1674 | 17..1350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:31 Download gff for
BO08064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-RA | 335..1673 | 12..1352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:23 Download gff for
BO08064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10494-RB | 343..1674 | 17..1350 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:23 Download gff for
BO08064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21517258..21517921 | 687..1350 | 99 | <- | Minus |
2R | 21517981..21518397 | 270..686 | 100 | <- | Minus |
2R | 21518457..21518709 | 17..269 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:05 Download gff for
BO08064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17404763..17405426 | 687..1350 | 99 | <- | Minus |
arm_2R | 17405486..17405902 | 270..686 | 100 | <- | Minus |
arm_2R | 17405962..17406214 | 17..269 | 100 | | Minus |
BO08064.pep Sequence
Translation from 16 to 1366
> BO08064.pep
MVSREMARRNCPKSPKHLRVKFHQMRRQYARARNGGEPFEHFEAVHELMQ
GEDVSDLDEEALESDSDMEADEDQSGMISETEGDDALDASGSSVNIVARC
KWAEGEVDLLLDLIHTLGLRAALLQKRNAKVFKLLSKEMAKRNCHKGAEK
LRIKFQQLRRLYNKVKNGTGKTFEHFEAMRLVLDPTEEEAAADAEAEAHL
SSASDSDFNDSDEEEGDASQRSGAHFWTDEEVDSFLLIIRDNGFFRALDG
SRKRNFQTLVHISNILAKQDIKRTPHQLRNKLRLLCKRHREAKEHGLDNV
RILPRHFELFDELIQAPRENRESAISRLIRISKPSFLKPPGKPSVPLESD
SDNSSSTCDLLRAAADSEDYVDAIEMEAEPTPIEALTAIIEGQKQLLAQI
KTTNESFLRQQREQQHQFLEQVSELMHRDREETLRRISEMLQPKASFLDH
BO08064.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:44:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10494-PA | 523 | CG10494-PA | 80..523 | 1..444 | 2265 | 100 | Plus |
CG10494-PB | 444 | CG10494-PB | 1..444 | 1..444 | 2265 | 100 | Plus |
CG10494-PA | 523 | CG10494-PA | 28..271 | 83..324 | 298 | 34.8 | Plus |