Clone Sequence Records
BO08065.3prime Sequence
969 bp (894 high quality bases) assembled on 2006-01-06
> BO08065.3prime
ATGGTCTAGAAAGCTTGCCGCCACGCCCCGCGTCTTCTTCGCTGCCACCT
CCTCATTGATCTCCCGGCTCGGGTCGAACTGCTGCGTCTGCGTCTCCCAG
AGGCGGGCATACAGTCCATTCTGCCTCAGCAGCTCCGAATGGGTGCCACG
TTCACCTACACGTCCGTTCTCGAGCACCAGAATCTCGTCCGCATCCTTGA
CTGTCGAGAGACGGTGGGCAATGCAAATGCTAGTGCGTCCTGAGGTAGCG
CGGGTCAGAGCCTGCAGAATGTTATGCTCGGTGATCGAGTCCAGACTGCT
TGTAGCCTCGTCAAAGATCAGAATGGGGGTGTTCTTCAGTATGGCCCTAG
CGATGGCAACGCGCTGCTTCTCGCCACCGGATAACTTTAATCCACGTTCG
CCTACCTGAGTGGAGTACTGTCCTGGCCAGCTCATGATGGAGTCATGCAA
ATCAGCCATGCGGGCAGCATTCTGCACTTCTGCGTGGGACTTGGACAGGT
TGCCATAGTGGATATTGTGCTCGATGGTGTTGTGGAATAGCACCGAATCC
TGCGGCACCACTGCAATAACCTTGCGCAGGCTCTCCAAATCCACGGCGCT
GATATCCTGGCCACCGATCAACACTTTACCAGAGTTTGGCTCAAAGAAGC
GGAAGAGAAGGCGCACCATCGACGATTTTCCTGAGCCAGAGCCGCCCACA
ATGGCGACGTTTTTACCGGCGGGTATGGTGAAACTGAGGTCCCGGAAAAT
GGGCTTGCCAGGTTCGTACTCGAAGCTCACGTTGCGGAACTCAATGGATG
AGTTAGTGGTGTCCACGAACAGGGGCTGGGCATTGGCGGCTGTCTGAATG
CTACTGTCCACGTTTCATCACGTGAACATGGCCCGCATGTCCAGCAAAGC
CTGTCGCACCTCACGATAAACACTGCCCAGAAAACCGAGGGGGATCGAGA
GCTGGAAGAGAGGGCGTTG
BO08065.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7955-PA | 2232 | CG7955-RA | 1384..2229 | 864..19 | 4230 | 100 | Minus |
| CG7955-PB | 2130 | CG7955-RB | 1282..2127 | 864..19 | 4230 | 100 | Minus |
| CG7955-PC | 1821 | CG7955-RC | 973..1818 | 864..19 | 4230 | 100 | Minus |
| CG7955-PA | 2232 | CG7955-RA | 1288..1378 | 960..870 | 455 | 100 | Minus |
| CG7955-PB | 2130 | CG7955-RB | 1186..1276 | 960..870 | 455 | 100 | Minus |
| CG7955-PC | 1821 | CG7955-RC | 877..967 | 960..870 | 455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:34:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ABCB7-RB | 2387 | CG7955-RB | 1263..2214 | 969..19 | 4690 | 99.7 | Minus |
| ABCB7-RA | 2743 | CG7955-RA | 1365..2316 | 969..19 | 4690 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:34:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1621979..1622665 | 960..274 | 3360 | 99.3 | Minus |
| 3L | 28110227 | 3L | 1622732..1622986 | 273..19 | 1275 | 100 | Minus |
Blast to na_te.dros performed 2015-02-04 20:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osvaldo | 1543 | Osvaldo OSV 1543bp | 427..464 | 66..29 | 109 | 76.3 | Minus |
BO08065.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:56 Download gff for
BO08065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7955-PA | 1278..2232 | 18..969 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:46 Download gff for
BO08065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7955-PC | 867..1821 | 18..969 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:27:29 Download gff for
BO08065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ABCB7-RA | 1365..2316 | 19..969 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:51:59 Download gff for
BO08065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ABCB7-RA | 1365..2316 | 19..969 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:51:59 Download gff for
BO08065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1621969..1622665 | 274..969 | 99 | -> | Minus |
| 3L | 1622732..1622986 | 19..273 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:27:29 Download gff for
BO08065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1621969..1622665 | 274..969 | 99 | -> | Minus |
| arm_3L | 1622732..1622986 | 19..273 | 100 | | Minus |
BO08065.5prime Sequence
907 bp (826 high quality bases) assembled on 2006-01-06
> BO08065.5prime
GAAGTTATCAGTCGACATGCTGCGTGCCATGATGGCCTACATCTGGCCAA
AGGAGGATCCACTGGTGCGAAAGCGGGTGGGTATTTCCCTGGGTCTGTTG
GCTGGCTCCAAGCTGCTGACCGTCTGTGTCCCCTTCTTGTTCAAAGGAGC
TGTGGACACGATGACAACGCTGAACATGGACACTGCCCCGGATGCGGTCC
TCTCCGCAGCCACCGCACTGATGTTGGGATATGGCATTGCTAGAGCCAGT
GCGGCGGGCTTTAATGAGTTGCGGAATGCAGTGTTTGCCAAGGTGGCCCA
CCACTCGATCCGAAAGATCGCCAGCAATGTGTTCCTGCATCTGCACAACC
TGGATCTGGCCTTCCACCTGAACAAACAAACTGGAGCACTGTCAAAGACC
ATCGATCGAGGATCGAGGGGCATTAACTTTGTGCTCTCCGCCATGGTCTT
CAACATTGTGCCCACTATCTTTGAGCTGGCCCTCGTGTCCAGTATCCTGG
GAGTGAAGTGTGGCCTGGCCTTCGCTGGTGTCAGCATGGGCTGCGTTGGC
ATATACGCTGCCTACACTCTGAGTGTGACCCAGTGGCGCACCCAGTTCCG
TGTATTTATGAACCAGGCGGAGAACGAGGCCGGCAACAAGGCCGTAGACT
CGCTGATCAACTACGAGACGGTGAAGTACTTCAACAACGAANAGTACGAG
GCGGGTTGCTACAACGAGGTGCTGAAGAAGTATGAGGCGGCCAGCTTGAA
GACTAGCTCCAGTCTCGCTCTGCTCAACTTTGGCCAGAACGCCATTTTCA
GCAGCGCACTGAGTCTGATTATGGTATTGGCCGCCAAGGAGATTGCCCAA
GGCAACATGACGGTTGGAGATTTGGTGATGGTCAACGCCCTGCTCTTCCA
GCTCTCG
BO08065.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7955-PA | 2232 | CG7955-RA | 412..1302 | 17..907 | 4436 | 99.8 | Plus |
| CG7955-PB | 2130 | CG7955-RB | 310..1200 | 17..907 | 4436 | 99.8 | Plus |
| CG7955-PC | 1821 | CG7955-RC | 1..891 | 17..907 | 4436 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:06:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ABCB7-RB | 2387 | CG7955-RB | 397..1287 | 17..907 | 4444 | 99.9 | Plus |
| ABCB7-RA | 2743 | CG7955-RA | 499..1389 | 17..907 | 4444 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:06:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1621317..1621993 | 231..907 | 3374 | 99.9 | Plus |
| 3L | 28110227 | 3L | 1621102..1621257 | 75..230 | 780 | 100 | Plus |
| 3L | 28110227 | 3L | 1620984..1621043 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:06:15 has no hits.
BO08065.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:57 Download gff for
BO08065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7955-PA | 407..1302 | 10..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:47 Download gff for
BO08065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7955-PC | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:47:21 Download gff for
BO08065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ABCB7-RA | 494..1389 | 10..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:03:48 Download gff for
BO08065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ABCB7-RA | 494..1389 | 10..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:03:48 Download gff for
BO08065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1621103..1621257 | 76..230 | 100 | -> | Plus |
| 3L | 1620979..1621042 | 10..75 | 95 | -> | Plus |
| 3L | 1621317..1621993 | 231..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:47:21 Download gff for
BO08065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1621103..1621257 | 76..230 | 100 | -> | Plus |
| arm_3L | 1620979..1621042 | 10..75 | 95 | -> | Plus |
| arm_3L | 1621317..1621993 | 231..907 | 99 | | Plus |
BO08065.complete Sequence
1852 bp assembled on 2007-11-30
GenBank Submission: FJ631036
> BO08065.complete
GAAGTTATCAGTCGACATGCTGCGTGCCATGATGGCCTACATCTGGCCAA
AGGAGGATCCACTGGTGCGAAAGCGGGTGGGTATTTCCCTGGGTCTGTTG
GCTGGCTCCAAGCTGCTGACCGTCTGTGTCCCCTTCTTGTTCAAAGGAGC
TGTGGACACGATGACAACGCTGAACATGGACACTGCCCCGGATGCGGTCC
TCTCCGCAGCCACCGCACTGATGTTGGGATATGGCATTGCTAGAGCCAGT
GCGGCGGGCTTTAATGAGTTGCGGAATGCAGTGTTTGCCAAGGTGGCCCA
CCACTCGATCCGAAAGATCGCCAGCAATGTGTTCCTGCATCTGCACAACC
TGGATCTGGCCTTCCACCTGAACAAACAAACTGGAGCACTGTCAAAGACC
ATCGATCGAGGATCGAGGGGCATTAACTTTGTGCTCTCCGCCATGGTCTT
CAACATTGTGCCCACTATCTTTGAGCTGGCCCTCGTGTCCAGTATCCTGG
GAGTGAAGTGTGGCCTGGCCTTCGCTGGTGTCAGCATGGGCTGCGTTGGC
ATATACGCTGCCTACACTCTGAGTGTGACCCAGTGGCGCACCCAGTTCCG
TGTATTTATGAACCAGGCGGAGAACGAGGCCGGCAACAAGGCCGTAGACT
CGCTGATCAACTACGAGACGGTGAAGTACTTCAACAACGAAAAGTACGAG
GCGGGTTGCTACAACGAGGTGCTGAAGAAGTATGAGGCGGCCAGCTTGAA
GACTAGCTCCAGTCTCGCTCTGCTCAACTTTGGCCAGAACGCCATTTTCA
GCAGCGCACTGAGTCTGATTATGGTATTGGCCGCCAAGGAGATTGCCCAA
GGCAACATGACGGTTGGAGATTTGGTGATGGTCAACGCCCTGCTCTTCCA
GCTCTCGATCCCCCTCGGTTTTCTGGGCAGTGTTTATCGTGAGGTGCGAC
AGGCTTTGCTGGACATGCGGGCCATGTTCACGTTGATGAACGTGGACAGT
AGCATTCAGACAGCCGCCAATGCCCAGCCCCTGTTCGTGGACACCACTAA
CTCATCCATTGAGTTCCGCAACGTGAGCTTCGAGTACGAACCTGGCAAGC
CCATTTTCCGGGACCTCAGTTTCACCATACCCGCCGGTAAAAACGTCGCC
ATTGTGGGCGGCTCTGGCTCAGGAAAATCGTCGATGGTGCGCCTTCTCTT
CCGCTTCTTTGAGCCAAACTCTGGTAAAGTGTTGATCGGTGGCCAGGATA
TCAGCGCCGTGGATTTGGAGAGCCTGCGCAAGGTTATTGCAGTGGTGCCG
CAGGATTCGGTGCTATTCCACAACACCATCGAGCACAATATCCACTATGG
CAACCTGTCCAAGTCCCACGCAGAAGTGCAGAATGCTGCCCGCATGGCTG
ATTTGCATGACTCCATCATGAGCTGGCCAGGACAGTACTCCACTCAGGTA
GGCGAACGTGGATTAAAGTTATCCGGTGGCGAGAAGCAGCGCGTTGCCAT
CGCTAGGGCCATACTGAAGAACACCCCCATTCTGATCTTTGACGAGGCTA
CAAGCAGTCTGGACTCGATCACCGAGCATAACATTCTGCAGGCTCTGACC
CGCGCTACCTCAGGACGCACTAGCATTTGCATTGCCCACCGTCTCTCGAC
AGTCAAGGATGCGGACGAGATTCTGGTGCTCGAGAACGGACGTGTAGGTG
AACGTGGCACCCATTCGGAGCTGCTGAGGCAGAATGGACTGTATGCCCGC
CTCTGGGAGACGCAGACGCAGCAGTTCGACCCGAGCCGGGAGATCAATGA
GGAGGTGGCAGCGAAGAAGACGCGGGGCGTGGCGGCAAGCTTTCTAGACC
AT
BO08065.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:24:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ABCB7-RB | 2130 | CG7955-PB | 310..2127 | 17..1834 | 9090 | 100 | Plus |
| ABCB7-RA | 2232 | CG7955-PA | 412..2229 | 17..1834 | 9090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:24:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ABCB7-RB | 2387 | CG7955-RB | 397..2214 | 17..1834 | 9090 | 100 | Plus |
| ABCB7-RA | 2743 | CG7955-RA | 499..2316 | 17..1834 | 9090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:24:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1621317..1622665 | 231..1579 | 6745 | 100 | Plus |
| 3L | 28110227 | 3L | 1622732..1622986 | 1580..1834 | 1275 | 100 | Plus |
| 3L | 28110227 | 3L | 1621102..1621257 | 75..230 | 780 | 100 | Plus |
| 3L | 28110227 | 3L | 1620984..1621043 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:24:29 has no hits.
BO08065.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:27 Download gff for
BO08065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7955-RC | 1..1821 | 17..1835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:43 Download gff for
BO08065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7955-RC | 778..2600 | 10..1834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:13 Download gff for
BO08065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ABCB7-RA | 499..2316 | 17..1836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:37:37 Download gff for
BO08065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7955-RC | 783..2600 | 17..1836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:21 Download gff for
BO08065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ABCB7-RA | 499..2316 | 17..1836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:21 Download gff for
BO08065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1620984..1621042 | 17..75 | 100 | -> | Plus |
| 3L | 1621103..1621257 | 76..230 | 100 | -> | Plus |
| 3L | 1621317..1622665 | 231..1579 | 100 | -> | Plus |
| 3L | 1622732..1622986 | 1580..1836 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:13 Download gff for
BO08065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1620984..1621042 | 17..75 | 100 | -> | Plus |
| arm_3L | 1621103..1621257 | 76..230 | 100 | -> | Plus |
| arm_3L | 1621317..1622665 | 231..1579 | 100 | -> | Plus |
| arm_3L | 1622732..1622986 | 1580..1836 | 99 | | Plus |
BO08065.pep Sequence
Translation from 16 to 1852
> BO08065.pep
MLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVDTMT
TLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHSIRK
IASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPT
IFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVFMNQ
AENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSSL
ALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIPL
GFLGSVYREVRQALLDMRAMFTLMNVDSSIQTAANAQPLFVDTTNSSIEF
RNVSFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFEP
NSGKVLIGGQDISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLSKS
HAEVQNAARMADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIARAIL
KNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVKDAD
EILVLENGRVGERGTHSELLRQNGLYARLWETQTQQFDPSREINEEVAAK
KTRGVAASFLDH
BO08065.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:42:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ABCB7-PB | 709 | CG7955-PB | 104..709 | 1..606 | 3034 | 100 | Plus |
| ABCB7-PA | 743 | CG7955-PA | 138..743 | 1..606 | 3034 | 100 | Plus |
| Hmt-1-PA | 866 | CG4225-PA | 232..817 | 2..588 | 1183 | 42.8 | Plus |
| Mdr49-PA | 1302 | CG3879-PA | 94..635 | 44..579 | 564 | 28.8 | Plus |
| CG1824-PA | 761 | CG1824-PA | 196..711 | 80..599 | 556 | 30.8 | Plus |
