Clone Sequence Records
BO08066.3prime Sequence
772 bp (770 high quality bases) assembled on 2006-01-06
> BO08066.3prime
ATGGTCTAGAAAGCTTGCGCTGTTTGTCTTGCGCTTCTCCAGTGCCTTCC
AAACCAGTTTCATGCGCTGCACGCAGTCGCGATGCTGGGACTCCCACAGC
AGTGTAGTAAGTCGTCCAACGGTGGCCACACCGTCCGCCGAGCTTCGAAT
CCACTGGAGCAACAGCTGGTATATCACCTCTCTAATATTGCCATGCATTT
GGTGATCGATTATGGCCTGGTCGATCTGTCCTTCCGACATGCCAAGATCC
CGCATCACCTGCTTCCAGCCCTCGCCCAAGTGCGTGGAAACCACATCGAG
CAGGCGCACATCCGGTTCCTCTTGTGACTGCATCATGGCCACAATGCTGA
CCGTTTTGCGCGTCGCACTTGCCCGCGGCTTACCGTCTGGAGAGGCGACC
GACTCCTCTGCGGTACTGGTGCTACCCTTTCGCGAGCTGCAGGCGCTCAA
GTTTTGGTTGAAGTTGTAGACGGAGCCGAAGTGCAGATTATTGGCATTCG
AGAAGTTCATGACCACCTGTTGCTGGGCGCTGTGTACGTTCATGGTGTTG
TTTGTCTGGACGTTACTGAGAGTGCCCGGAATATTGGCGGAATGCACCAC
ATCCATTGAATTGTAGTTTGGGTCGCTGAGCTCGCGCAGCACGGATTCGG
TCAGATCCGAGGAGGCTGTGGGCGTGCCAGCGGTGGAGGGCAGCGCCAGG
GCTCCGCTGTTGTTGTTATCTGGTTCGTTGTCGTCCACGGGAGCTGCGTC
CTTTTCCAGGCGTCCCTCGACG
BO08066.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5576-PA | 822 | imd-RA | 66..819 | 772..19 | 3770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:02:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| imd-RB | 1518 | CG5576-RB | 386..1139 | 772..19 | 3770 | 100 | Minus |
| imd-RA | 1320 | CG5576-RA | 188..941 | 772..19 | 3770 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:02:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18410749..18411345 | 176..772 | 2985 | 100 | Plus |
| 2R | 25286936 | 2R | 18410175..18410335 | 19..179 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:02:20 has no hits.
BO08066.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:58 Download gff for
BO08066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-PA | 66..822 | 18..772 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:48 Download gff for
BO08066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5576-PA | 66..822 | 18..772 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:09 Download gff for
BO08066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-RA | 188..941 | 19..772 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:25:39 Download gff for
BO08066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-RA | 188..941 | 19..772 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:25:39 Download gff for
BO08066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18410175..18410333 | 19..177 | 100 | <- | Plus |
| 2R | 18410751..18411345 | 178..772 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:09 Download gff for
BO08066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14297680..14297838 | 19..177 | 100 | <- | Plus |
| arm_2R | 14298256..14298850 | 178..772 | 100 | | Plus |
BO08066.5prime Sequence
851 bp (789 high quality bases) assembled on 2006-01-06
> BO08066.5prime
GAAGTTATCAGTCGACATGTCAAAGCTCAGGAACCTGTTGCCCACAATCT
TTGGCGGGAAGGAGGCACAGAATCCGACACCCGTCGAGGGACGCCTGGAA
AAGGACGCAGCTCCCGTGGACGACAACGAACCAGATAACAACAACAGCGG
AGCCCTGGCGCTGCCCTCCACCGCTGGCACGCCCACAGCCTCCTCGGATC
TGACCGAATCCGTGCTGCGCGAGCTCAGCGACCCAAACTACAATTCAATG
GATGTGGTGCATTCCGCCAATATTCCGGGCACTCTCAGTAACGTCCAGAC
AAACAACACCATGAACGTACACAGCGCCCAGCAACAGGTGGTCATGAACT
TCTCGAATGCCAATAATCTGCACTTCGGCTCCGTCTACAACTTCAACCAA
AACTTGAGCGCCTGCAGCTCGCGAAAGGGTAGCACCAGTACCGCAGAGGA
GTCGGTCGCCTCTCCAGACGGTAAGCCGCGGGCAAGTGCGACGCGCAAAA
CGGTCAGCATTGTGGCCATGATGCAGTCACAAGAGGAACCGGATGTGCGC
CTGCTCGATGTGGTTTCCACGCACTTGGGCGAGGGCTGGAAGCAGGTGAT
GCGGGATCTTGGCATGTCGGAAGGACAGATCGACCAGGCCATAATCGATC
ACCAAATGCATGGCAATATTAGAGAGGTGATATACCAGCTGTTGCTCCAG
TGGATTCGAAGCTCGGCGGACGGTGTGGCCACCGTTGGACGACTTACTAC
ACTGCTGTGGGAGTCCCAGCATCGCGACTGCGTGCAGCGCATGAAACTGG
TTTGGAAGGCACTGGAGAAGCGCAAGACAAACAGCGCAAGCTTTCTAGAC
C
BO08066.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5576-PA | 822 | imd-RA | 1..819 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:09:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| imd-RB | 1518 | CG5576-RB | 320..1139 | 16..835 | 4100 | 100 | Plus |
| imd-RA | 1320 | CG5576-RA | 122..941 | 16..835 | 4100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18410749..18411411 | 678..16 | 3315 | 100 | Minus |
| 2R | 25286936 | 2R | 18410175..18410335 | 835..675 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:09:55 has no hits.
BO08066.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:36:59 Download gff for
BO08066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-PA | 1..822 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:49 Download gff for
BO08066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5576-PA | 1..822 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:22 Download gff for
BO08066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-RA | 117..941 | 10..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:10:08 Download gff for
BO08066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-RA | 117..941 | 10..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:10:08 Download gff for
BO08066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18410175..18410333 | 677..835 | 100 | <- | Minus |
| 2R | 18410751..18411416 | 10..676 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:22 Download gff for
BO08066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14297680..14297838 | 677..835 | 100 | <- | Minus |
| arm_2R | 14298256..14298921 | 10..676 | 99 | | Minus |
BO08066.complete Sequence
853 bp (853 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631037
> BO08066.complete
GAAGTTATCAGTCGACATGTCAAAGCTCAGGAACCTGTTGCCCACAATCT
TTGGCGGGAAGGAGGCACAGAATCCGACACCCGTCGAGGGACGCCTGGAA
AAGGACGCAGCTCCCGTGGACGACAACGAACCAGATAACAACAACAGCGG
AGCCCTGGCGCTGCCCTCCACCGCTGGCACGCCCACAGCCTCCTCGGATC
TGACCGAATCCGTGCTGCGCGAGCTCAGCGACCCAAACTACAATTCAATG
GATGTGGTGCATTCCGCCAATATTCCGGGCACTCTCAGTAACGTCCAGAC
AAACAACACCATGAACGTACACAGCGCCCAGCAACAGGTGGTCATGAACT
TCTCGAATGCCAATAATCTGCACTTCGGCTCCGTCTACAACTTCAACCAA
AACTTGAGCGCCTGCAGCTCGCGAAAGGGTAGCACCAGTACCGCAGAGGA
GTCGGTCGCCTCTCCAGACGGTAAGCCGCGGGCAAGTGCGACGCGCAAAA
CGGTCAGCATTGTGGCCATGATGCAGTCACAAGAGGAACCGGATGTGCGC
CTGCTCGATGTGGTTTCCACGCACTTGGGCGAGGGCTGGAAGCAGGTGAT
GCGGGATCTTGGCATGTCGGAAGGACAGATCGACCAGGCCATAATCGATC
ACCAAATGCATGGCAATATTAGAGAGGTGATATACCAGCTGTTGCTCCAG
TGGATTCGAAGCTCGGCGGACGGTGTGGCCACCGTTGGACGACTTACTAC
ACTGCTGTGGGAGTCCCAGCATCGCGACTGCGTGCAGCGCATGAAACTGG
TTTGGAAGGCACTGGAGAAGCGCAAGACAAACAGCGCAAGCTTTCTAGAC
CAT
BO08066.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:19:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| imd-RB | 822 | CG5576-PB | 1..819 | 17..835 | 4095 | 100 | Plus |
| imd-RA | 822 | CG5576-PA | 1..819 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| imd-RB | 1518 | CG5576-RB | 320..1139 | 16..835 | 4100 | 100 | Plus |
| imd-RA | 1320 | CG5576-RA | 122..941 | 16..835 | 4100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:19:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18410749..18411411 | 678..16 | 3315 | 100 | Minus |
| 2R | 25286936 | 2R | 18410175..18410335 | 835..675 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:19:27 has no hits.
BO08066.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:41:46 Download gff for
BO08066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-RA | 1..822 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:01 Download gff for
BO08066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-RA | 288..1112 | 10..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:40 Download gff for
BO08066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-RA | 123..941 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:41:47 Download gff for
BO08066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-RA | 288..1112 | 10..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:19 Download gff for
BO08066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| imd-RA | 123..941 | 17..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:19 Download gff for
BO08066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18410173..18410333 | 677..837 | 98 | <- | Minus |
| 2R | 18410751..18411410 | 17..676 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:40 Download gff for
BO08066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14297678..14297838 | 677..837 | 98 | <- | Minus |
| arm_2R | 14298256..14298915 | 17..676 | 100 | | Minus |
BO08066.pep Sequence
Translation from 16 to 853
> BO08066.pep
MSKLRNLLPTIFGGKEAQNPTPVEGRLEKDAAPVDDNEPDNNNSGALALP
STAGTPTASSDLTESVLRELSDPNYNSMDVVHSANIPGTLSNVQTNNTMN
VHSAQQQVVMNFSNANNLHFGSVYNFNQNLSACSSRKGSTSTAEESVASP
DGKPRASATRKTVSIVAMMQSQEEPDVRLLDVVSTHLGEGWKQVMRDLGM
SEGQIDQAIIDHQMHGNIREVIYQLLLQWIRSSADGVATVGRLTTLLWES
QHRDCVQRMKLVWKALEKRKTNSASFLDH
BO08066.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| imd-PB | 273 | CG5576-PB | 1..273 | 1..273 | 1401 | 100 | Plus |
| imd-PA | 273 | CG5576-PA | 1..273 | 1..273 | 1401 | 100 | Plus |
