Clone Sequence Records
BO08067.3prime Sequence
904 bp (822 high quality bases) assembled on 2006-01-06
> BO08067.3prime
ATGGTCTAGAAAGCTTGCTATTGTGGTAGCCTCGGTTGTCCTGCTGACAT
TCATATTTTCATTCTCAAAGGGACCGGGAAAATTGTCCAGTTTGTGGGCC
ACATCCTCCACACGGCAGCACTGCACCATTCCAAAGGCGGGAAACTCGTG
GAGTCTGGAGAAGAGGGTGTTCCTCAGCCAGGACACTTGGTTGCACATCG
AGGGGCACAGATTGCTTAAGTCACTGCGATAGAAGGGCGAGTTGTGTCCA
ATGATGACGAACTCATCCTGTCCGGTACCGGACTTTTCCACAGCGTGAAC
ATGGGCCCAAATGTGGGCGGGAATGGGCAGGAATTTGCCACCAATCAGTT
CAATGTTGAGCGATCGGCTTCCGTTGCATGATTGCCCGGCGAACGTCGGC
AGCTTCACGGTTCCGGAAACACCCAAACGAATGTCGAAGTGGACACCGAT
GGCATCACGCATTGCCTTCGTCCAATGCTTCCAGTTGCCGGAACGCAGAA
CCTCCAACCAGACGGTGGTCAGCAAGTCCTCGTAGACAACCAAGTGTCTA
CTAACCATCTCATCCTGGACCAAACTGCCAACCTGAAAAGTGTCCTCCGT
GAACAACTGCTTCTCCTTTGCCAAGTACGCATCAAGTTCACTCTTGCTGA
TGGTCTCGAATAGATTTTTTTGGTAACTGATAGGAGTATCAAGTCCGATA
TCGTTAAGTTGTCCCAATTGGGTCTCTGGGAAAATCTGGATATTATTGAA
ATTTGTGGTATAACCAATATATTTCAATTGAAATGCGGCCAAATCATAGC
ACAATGCTGAATATTTTATTAAACCAATGCCATCGAATTTTCTTCCGACA
ACTAGAGTCATGCCCGTGCAATTTGGCAATTTGTTCATGCTCTCAAACAA
CTGA
BO08067.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2233-PA | 1245 | CG2233-RA | 357..1242 | 904..19 | 4430 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2233-RA | 1480 | CG2233-RA | 389..1274 | 904..19 | 4430 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8036220..8036637 | 232..649 | 2090 | 100 | Plus |
X | 23542271 | X | 8035947..8036159 | 19..231 | 1065 | 100 | Plus |
X | 23542271 | X | 8036900..8037080 | 724..904 | 905 | 100 | Plus |
X | 23542271 | X | 8036726..8036804 | 647..725 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:10:02 has no hits.
BO08067.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:00 Download gff for
BO08067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-PA | 358..1245 | 15..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:51 Download gff for
BO08067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-PA | 358..1245 | 15..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:24 Download gff for
BO08067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-RA | 390..1277 | 15..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:10:26 Download gff for
BO08067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-RA | 390..1277 | 15..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:10:26 Download gff for
BO08067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8035943..8036159 | 15..231 | 99 | <- | Plus |
X | 8036220..8036634 | 232..646 | 100 | <- | Plus |
X | 8036726..8036802 | 647..723 | 100 | <- | Plus |
X | 8036900..8037079 | 724..903 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:24 Download gff for
BO08067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7929976..7930192 | 15..231 | 99 | <- | Plus |
arm_X | 7930253..7930667 | 232..646 | 100 | <- | Plus |
arm_X | 7930759..7930835 | 647..723 | 100 | <- | Plus |
arm_X | 7930933..7931112 | 724..903 | 100 | | Plus |
BO08067.5prime Sequence
884 bp (772 high quality bases) assembled on 2006-01-06
> BO08067.5prime
GAAGTTATCAGTCGACATGTTTTCGATTAACGCCGTGATCCTGGGCATTT
TGGTTACTTCCGTTATGGCCCAGGATGCAAGGGGAACGTGTGAACTGAGC
ATCGGTTCTCCGGCTCCGGTTGTTATTAGCAATTTTGGCTCCCAGCGTTT
ATTGTTCGATTCCGTGCGAAAATTAGAACGGGAAAATTACCAGACCATTG
ACCTTTTCTGCGCGAGCGGATTTTCCATAGACTATTACAACTATTACAAC
AACCAGATCTCGACTACAATCAAAGCGACTAAACTTACAATGACCTGCGA
CCCTATTCATCGGTTTACCTATAAAGATGGCATAAAAGATGTAATTAGTG
TTCGGTGTCTGGAGGTCGGCCCTCAGTTGTTTGAGAGCATGAACAAATTG
CCAAATTGCACGGGCATGACTCTAGTTGTCGGAAGAAAATTCGATGGCAT
TGGTTTAATAAAATATTCAGCATTGTGCTATGATTTGGCCGCATTTCAAT
TGAAATATATTGGTTATACCACAAATTTCAATAATATCCAGATTTTCCCA
GAGACCCAATTGGGACAACTTAACGATATCGGACTTGATACTCCTATCAG
TTACCAAAAAAATCTATTCGAGACCATCAGCAAGAGTGAACTTGATGCGT
ACTTGGCAAAGGAGAAGCAGTTGTTCACGGAGGACACTTTTCAGGTTGGC
AGTTTGGTCCAGGATGAGATGGTTAGTAGACACTTGGTTGTCTACGAGGA
CTTGCTGACCACCGTCTGGTTGGAGGTTCTGCGTTCCGGCAACTGGAAGC
ATTGGACGAAGGCAATGCGTGATGCCATCGGTGTCCACTTCGACATTCGT
TTGGGTGTTTCCGGAACCGTGAAGCTGCCGACGT
BO08067.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2233-PA | 1245 | CG2233-RA | 1..868 | 17..884 | 4340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2233-RA | 1480 | CG2233-RA | 33..900 | 17..884 | 4340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:34:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8036900..8037212 | 553..241 | 1565 | 100 | Minus |
X | 23542271 | X | 8036381..8036637 | 884..628 | 1285 | 100 | Minus |
X | 23542271 | X | 8037262..8037485 | 240..17 | 1120 | 100 | Minus |
X | 23542271 | X | 8036726..8036804 | 630..552 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:34:06 has no hits.
BO08067.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:01 Download gff for
BO08067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:52 Download gff for
BO08067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:13:48 Download gff for
BO08067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-RA | 25..900 | 8..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:20:30 Download gff for
BO08067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-RA | 25..900 | 8..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:20:30 Download gff for
BO08067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8036381..8036634 | 631..884 | 100 | <- | Minus |
X | 8036726..8036802 | 554..630 | 100 | <- | Minus |
X | 8036900..8037212 | 241..553 | 100 | <- | Minus |
X | 8037262..8037493 | 8..240 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:13:48 Download gff for
BO08067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7930414..7930667 | 631..884 | 100 | <- | Minus |
arm_X | 7930759..7930835 | 554..630 | 100 | <- | Minus |
arm_X | 7930933..7931245 | 241..553 | 100 | <- | Minus |
arm_X | 7931295..7931526 | 8..240 | 98 | | Minus |
BO08067.complete Sequence
1276 bp (1276 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631038
> BO08067.complete
GAAGTTATCAGTCGACATGTTTTCGATTAACGCCGTGATCCTGGGCATTT
TGGTTACTTCCGTTATGGCCCAGGATGCAAGGGGAACGTGTGAACTGAGC
ATCGGTTCTCCGGCTCCGGTTGTTATTAGCAATTTTGGCTCCCAGCGTTT
ATTGTTCGATTCCGTGCGAAAATTAGAACGGGAAAATTACCAGACCATTG
ACCTTTTCTGCGCGAGCGGATTTTCCATAGACTATTACAACTATTACAAC
AACCAGATCTCGACTACAATCAAAGCGACTAAACTTACAATGACCTGCGA
CCCTATTCATCGGTTTACCTATAAAGATGGCATAAAAGATGTAATTAGTG
TTCGGTGTCTGGAGGTCGGCCCTCAGTTGTTTGAGAGCATGAACAAATTG
CCAAATTGCACGGGCATGACTCTAGTTGTCGGAAGAAAATTCGATGGCAT
TGGTTTAATAAAATATTCAGCATTGTGCTATGATTTGGCCGCATTTCAAT
TGAAATATATTGGTTATACCACAAATTTCAATAATATCCAGATTTTCCCA
GAGACCCAATTGGGACAACTTAACGATATCGGACTTGATACTCCTATCAG
TTACCAAAAAAATCTATTCGAGACCATCAGCAAGAGTGAACTTGATGCGT
ACTTGGCAAAGGAGAAGCAGTTGTTCACGGAGGACACTTTTCAGGTTGGC
AGTTTGGTCCAGGATGAGATGGTTAGTAGACACTTGGTTGTCTACGAGGA
CTTGCTGACCACCGTCTGGTTGGAGGTTCTGCGTTCCGGCAACTGGAAGC
ATTGGACGAAGGCAATGCGTGATGCCATCGGTGTCCACTTCGACATTCGT
TTGGGTGTTTCCGGAACCGTGAAGCTGCCGACGTTCGCCGGGCAATCATG
CAACGGAAGCCGATCGCTCAACATTGAACTGATTGGTGGCAAATTCCTGC
CCATTCCCGCCCACATTTGGGCCCATGTTCACGCTGTGGAAAAGTCCGGT
ACCGGACAGGATGAGTTCGTCATCATTGGACACAACTCGCCCTTCTATCG
CAGTGACTTAAGCAATCTGTGCCCCTCGATGTGCAACCAAGTGTCCTGGC
TGAGGAACACCCTCTTCTCCAGACTCCACGAGTTTCCCGCCTTTGGAATG
GTGCAGTGCTGCCGTGTGGAGGATGTGGCCCACAAACTGGACAATTTTCC
CGGTCCCTTTGAGAATGAAAATATGAATGTCAGCAGGACAACCGAGGCTA
CCACAATAGCAAGCTTTCTAGACCAT
BO08067.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:59:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2233-RA | 1245 | CG2233-PA | 1..1242 | 17..1258 | 6210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:59:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2233-RA | 1480 | CG2233-RA | 33..1274 | 17..1258 | 6210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:59:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8036220..8036637 | 1045..628 | 2090 | 100 | Minus |
X | 23542271 | X | 8036900..8037212 | 553..241 | 1565 | 100 | Minus |
X | 23542271 | X | 8037262..8037485 | 240..17 | 1120 | 100 | Minus |
X | 23542271 | X | 8035947..8036159 | 1258..1046 | 1065 | 100 | Minus |
X | 23542271 | X | 8036726..8036804 | 630..552 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:59:28 has no hits.
BO08067.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:18 Download gff for
BO08067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-RA | 1..1245 | 17..1262 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:28 Download gff for
BO08067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-RA | 8..1260 | 8..1262 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:39 Download gff for
BO08067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-RA | 40..1274 | 24..1260 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:18 Download gff for
BO08067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-RA | 8..1260 | 8..1262 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:45 Download gff for
BO08067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2233-RA | 40..1274 | 24..1260 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:45 Download gff for
BO08067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8035945..8036159 | 1046..1260 | 99 | <- | Minus |
X | 8036220..8036634 | 631..1045 | 100 | <- | Minus |
X | 8036726..8036802 | 554..630 | 100 | <- | Minus |
X | 8036900..8037212 | 241..553 | 100 | <- | Minus |
X | 8037262..8037478 | 24..240 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:39 Download gff for
BO08067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7930759..7930835 | 554..630 | 100 | <- | Minus |
arm_X | 7930933..7931245 | 241..553 | 100 | <- | Minus |
arm_X | 7931295..7931511 | 24..240 | 100 | | Minus |
arm_X | 7929978..7930192 | 1046..1260 | 99 | <- | Minus |
arm_X | 7930253..7930667 | 631..1045 | 100 | <- | Minus |
BO08067.pep Sequence
Translation from 16 to 1276
> BO08067.pep
MFSINAVILGILVTSVMAQDARGTCELSIGSPAPVVISNFGSQRLLFDSV
RKLERENYQTIDLFCASGFSIDYYNYYNNQISTTIKATKLTMTCDPIHRF
TYKDGIKDVISVRCLEVGPQLFESMNKLPNCTGMTLVVGRKFDGIGLIKY
SALCYDLAAFQLKYIGYTTNFNNIQIFPETQLGQLNDIGLDTPISYQKNL
FETISKSELDAYLAKEKQLFTEDTFQVGSLVQDEMVSRHLVVYEDLLTTV
WLEVLRSGNWKHWTKAMRDAIGVHFDIRLGVSGTVKLPTFAGQSCNGSRS
LNIELIGGKFLPIPAHIWAHVHAVEKSGTGQDEFVIIGHNSPFYRSDLSN
LCPSMCNQVSWLRNTLFSRLHEFPAFGMVQCCRVEDVAHKLDNFPGPFEN
ENMNVSRTTEATTIASFLDH
BO08067.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2233-PA | 414 | CG2233-PA | 1..414 | 1..414 | 2180 | 100 | Plus |