Clone Sequence Records
BO08068.3prime Sequence
958 bp (855 high quality bases) assembled on 2006-01-06
> BO08068.3prime
ATGGTCTAGAAAGCTTGCTTTTGCTGAACTTTTGGCCTCCAAGAAAAATG
CTTTGTTTGCCATGCGGTTGGTTTTGCCATTGGGACTGCGCACCAGATCC
TCCACGATGATGGCACCTCCGTTCAACTGCTTGTACTTGGCATCGATATG
GGTCTCCACATAGTCCACAATGTCCTGGGCCGTGAGAGCACTACCCCGCT
TCTTGACCACGGCCGCGGTGGCCTCATCACCGTTGATCTCATTCCACACC
CCGAATACACAGACTTCAACCACGTCTGGCATCTTTGAGATGACACTCTC
GATTTCGTTGGGATAGTACATGATGTTCTGGAACTTAAGCATGTCCTTCT
TGCGCTCCACAATGTATATAAAGCCATCGTCATCCACGTATCCGAGGTCC
CCTGTGTGGAACCAGTTATGGTGGTCTCTCATTTTGTGTGTTTCCTCTGG
ATTGCCATAGTACCCGGCCCAATATTGACCATTCCAAAGGCACAGCTCAC
CCACCTCATCGGGCCCAAGGGATTCACCCTTTTCACAGATCACTTTAAGC
TTAAGTCCCGCCACCAAACGACCCACCGAATTCGGCTTCTCATCGAAGTG
TAAGTTCAAGGCGGCCATGCTGCCCAGTTCTGTAAAGCCGTAGGCAAAGT
GTAGGCAGTCCTTGCTTAGGCGACTCCTGATCCGATGCTGTGTCTCTACC
GAAGCCCGTGATCCTCCAAAAAGGTAGTACCTTAAGCTCGACAAGTCGGA
GGTGGTGAACGAGGGAGAGTTGACCATCATGGCCATGTGCGCGGGCGCTT
GATTATCCAAGTGATCTGGTGCTCTTCTACGAGTCGCATGAAGAACTCCG
GATCGAAGATATTATCTGCTATAATACGCTTGGTGCTGAATACCCCGGAT
GTTACAGTGGTAAGCAGACCCGTAATCCAGTCGAGAGTACTGTGGCTGTA
TTGAACGT
BO08068.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11407-PA | 1617 | CG11407-RA | 831..1614 | 802..19 | 3920 | 100 | Minus |
CG11407-PA | 1617 | CG11407-RA | 674..830 | 958..802 | 785 | 100 | Minus |
CG6300-PA | 1614 | CG6300-RA | 1282..1355 | 351..278 | 145 | 87.8 | Minus |
CG11659-PA | 1641 | CG11659-RA | 1282..1355 | 351..278 | 145 | 87.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:34:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11407-RA | 1789 | CG11407-RA | 736..1676 | 958..19 | 4680 | 99.9 | Minus |
CG6300-RA | 1724 | CG6300-RA | 940..1630 | 743..53 | 605 | 73.1 | Minus |
CG11659-RA | 1705 | CG11659-RA | 940..1630 | 743..53 | 575 | 72.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:34:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19782092..19783032 | 958..19 | 4655 | 99.9 | Minus |
3R | 32079331 | 3R | 19771476..19772166 | 53..743 | 575 | 72.2 | Plus |
3R | 32079331 | 3R | 19775534..19776224 | 53..743 | 545 | 71.9 | Plus |
3L | 28110227 | 3L | 5872944..5873104 | 417..257 | 235 | 76.4 | Minus |
3L | 28110227 | 3L | 5874981..5875206 | 417..192 | 200 | 72.6 | Minus |
3R | 32079331 | 3R | 19780226..19780341 | 365..250 | 190 | 77.6 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:34:57 has no hits.
BO08068.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:02 Download gff for
BO08068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-PA | 674..1617 | 15..958 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:53 Download gff for
BO08068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-PA | 674..1617 | 15..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:27:31 Download gff for
BO08068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-RA | 736..1679 | 15..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:52:01 Download gff for
BO08068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-RA | 736..1679 | 15..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:52:01 Download gff for
BO08068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19782092..19783035 | 15..958 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:27:31 Download gff for
BO08068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15607814..15608757 | 15..958 | 99 | | Minus |
BO08068.5prime Sequence
926 bp (843 high quality bases) assembled on 2006-01-06
> BO08068.5prime
GAAGTTATCAGTCGACATGCCGTACAGACCAGCAAGCTATTACGATGCTG
ATCGCAAGATCTGGAGCGGAGACCAATTGGAATACTACTTCGACCCACAT
CTGTCCATCGGAGAGATTATATTCAACGAGATGCGGAGGCATCCACAGCT
CATCGCTCAGATCTCAGCTACGGAGAACACGATATTGACCAGGGCGGAAC
TTCAGGCCAATGCAATGCACATTGCCAGCTATATGCGATCTTTGGGCCTC
CTTCAAATGGATATAGTGGGCATTATAGCGAGGAATACCACCCACATTTC
AGCAGTGGCCTATGCCTGCTTCTTCAACGGCATTGCCTTTCACTCGCTCA
ACATCTCATATGAACAAAGTACAATCGAAAAGCTCTTTAGCATCACCAGG
CCAAATATCATTTTTTGTGATGGGGATGAGTTCGAGAAGGTCCGATCTGC
CACGGCACAACTGGATGTAAAGATAATCACCATGCGTAATCATCCATCGG
GTTCTATAAGGATCGATCAAGTCCTGTCAACTCCCATTGAGAAAAACTTC
CAGCCAGTACGGTTGGAACAGGGCAACGATCAGACTTTGGCCATTCTCTG
CTCCTCAGGCACAACGGGCATTCCAAAGGCTGTGACAATAACCAACAGCA
GACAGATCCTTAATTCCAGTCATTCCTTAACCACCAATGACGTTCAATAC
AGCCACAGTACTCTCGACTGGATTACGGGTCTGCTTACCACTGTAACATC
CGGGGTATTCAGCACCAAGCGTATTATAGCAGATAATATCTTCGATCCGG
AGTTCTTCATGCGACTCGTAGAAGAGCACCAGATCACTTGGATAATTTCA
GCGCCCGCGCACATGGCCATGATGGTCAACTCTCCCCTCGTCACCACCTC
CGACTTGTCGAGCTTAAGGTACTACC
BO08068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11407-PA | 1617 | CG11407-RA | 1..870 | 17..886 | 4300 | 99.7 | Plus |
CG11407-PA | 1617 | CG11407-RA | 875..910 | 891..926 | 180 | 100 | Plus |
CG6300-PA | 1614 | CG6300-RA | 548..587 | 564..603 | 175 | 97.5 | Plus |
CG11659-PA | 1641 | CG11659-RA | 548..587 | 564..603 | 175 | 97.5 | Plus |
CG6300-PA | 1614 | CG6300-RA | 403..479 | 419..495 | 160 | 88.3 | Plus |
CG11659-PA | 1641 | CG11659-RA | 403..479 | 419..495 | 160 | 88.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:04:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11407-RA | 1789 | CG11407-RA | 63..972 | 17..926 | 4475 | 99.6 | Plus |
CG11659-RA | 1705 | CG11659-RA | 51..832 | 17..798 | 1180 | 77.4 | Plus |
CG6300-RA | 1724 | CG6300-RA | 51..799 | 17..765 | 1165 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:04:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19781507..19782022 | 157..672 | 2580 | 100 | Plus |
3R | 32079331 | 3R | 19782075..19782328 | 673..926 | 1180 | 97.6 | Plus |
3R | 32079331 | 3R | 19772486..19772948 | 648..186 | 935 | 80.1 | Minus |
3R | 32079331 | 3R | 19776544..19777033 | 648..159 | 935 | 79.4 | Minus |
3R | 32079331 | 3R | 19781308..19781451 | 17..160 | 720 | 100 | Plus |
3R | 32079331 | 3R | 19773042..19773175 | 150..17 | 220 | 77.6 | Minus |
3R | 32079331 | 3R | 19777097..19777230 | 150..17 | 220 | 77.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:04:40 has no hits.
BO08068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:03 Download gff for
BO08068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:55 Download gff for
BO08068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:10:06 Download gff for
BO08068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-RA | 61..972 | 14..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:28 Download gff for
BO08068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-RA | 61..972 | 14..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:28 Download gff for
BO08068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19782075..19782328 | 673..926 | 98 | | Plus |
3R | 19781306..19781451 | 14..160 | 99 | -> | Plus |
3R | 19781511..19782022 | 161..672 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:10:06 Download gff for
BO08068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15607028..15607173 | 14..160 | 99 | -> | Plus |
arm_3R | 15607233..15607744 | 161..672 | 100 | -> | Plus |
arm_3R | 15607797..15608050 | 673..926 | 98 | | Plus |
BO08068.complete Sequence
1648 bp (1648 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631039
> BO08068.complete
GAAGTTATCAGTCGACATGCCGTACAGACCAGCAAGCTATTACGATGCTG
ATCGCAAGATCTGGAGCGGAGACCAATTGGAATACTACTTCGACCCACAT
CTGTCCATCGGAGAGATTATATTCAACGAGATGCGGAGGCATCCACAGCT
CATCGCTCAGATCTCAGCTACGGAGAACACGATATTGACCAGGGCGGAAC
TTCAGGCCAATGCAATGCACATTGCCAGCTATATGCGATCTTTGGGCCTC
CTTCAAATGGATATAGTGGGCATTATAGCGAGGAATACCACCCACATTTC
AGCAGTGGCCTATGCCTGCTTCTTCAACGGCATTGCCTTTCACTCGCTCA
ACATCTCATATGAACAAAGTACAATCGAAAAGCTCTTTAGCATCACCAGG
CCAAATATCATTTTTTGTGATGGGGATGAGTTCGAGAAGGTCCGATCTGC
CACGGCACAACTGGATGTAAAGATAATCACCATGCGTAATCATCCATCGG
GTTCTATAAGGATCGATCAAGTCCTGTCAACTCCCATTGAGAAAAACTTC
CAGCCAGTACGGTTGGAACAGGGCAACGATCAGACTTTGGCCATTCTCTG
CTCCTCAGGCACAACGGGCATTCCAAAGGCTGTGACAATAACCAACAGCA
GACAGATCCTTAATTCCAGTCATTCCTTAACCACCAATGACGTTCAATAC
AGCCACAGTACTCTCGACTGGATTACGGGTCTGCTTACCACTGTAACATC
CGGGGTATTCAGCACCAAGCGTATTATAGCAGATAATATCTTCGATCCGG
AGTTCTTCATGCGACTCGTAGAAGAGCACCAGATCACTTGGATAATTCAA
GCGCCCGCGCACATGGCCATGATGGTCAACTCTCCCTCGTTCACCACCTC
CGACTTGTCGAGCTTAAGGTACTACCTTTTTGGAGGATCACGGGCTTCGG
TAGAGACACAGCATCGGATCAGGAGTCGCCTAAGCAAGGACTGCCTACAC
TTTGCCTACGGCTTTACAGAACTGGGCAGCATGGCCGCCTTGAACTTACA
CTTCGATGAGAAGCCGAATTCGGTGGGTCGTTTGGTGGCGGGACTTAAGC
TTAAAGTGATCTGTGAAAAGGGTGAATCCCTTGGGCCCGATGAGGTGGGT
GAGCTGTGCCTTTGGAATGGTCAATATTGGGCCGGGTACTATGGCAATCC
AGAGGAAACACACAAAATGAGAGACCACCATAACTGGTTCCACACAGGGG
ACCTCGGATACGTGGATGACGATGGCTTTATATACATTGTGGAGCGCAAG
AAGGACATGCTTAAGTTCCAGAACATCATGTACTATCCCAACGAAATCGA
GAGTGTCATCTCAAAGATGCCAGACGTGGTTGAAGTCTGTGTATTCGGGG
TGTGGAATGAGATCAACGGTGATGAGGCCACCGCGGCCGTGGTCAAGAAG
CGGGGTAGTGCTCTCACGGCCCAGGACATTGTGGACTATGTGGAGACCCA
TATCGATGCCAAGTACAAGCAGTTGAACGGAGGTGCCATCATCGTGGAGG
ATCTGGTGCGCAGTCCCAATGGCAAAACCAACCGCATGGCAAACAAAGCA
TTTTTCTTGGAGGCCAAAAGTTCAGCAAAAGCAAGCTTTCTAGACCAT
BO08068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11407-RA | 1617 | CG11407-PA | 1..1614 | 17..1630 | 8070 | 100 | Plus |
CG6300-RA | 1614 | CG6300-PA | 1..1580 | 17..1596 | 1585 | 73.4 | Plus |
CG11659-RA | 1641 | CG11659-PA | 1..1580 | 17..1596 | 1570 | 73.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11407-RA | 1789 | CG11407-RA | 63..1676 | 17..1630 | 8070 | 100 | Plus |
CG6300-RA | 1724 | CG6300-RA | 51..1630 | 17..1596 | 1585 | 73.4 | Plus |
CG11659-RA | 1705 | CG11659-RA | 51..1630 | 17..1596 | 1570 | 73.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19782075..19783032 | 673..1630 | 4790 | 100 | Plus |
3R | 32079331 | 3R | 19781507..19782022 | 157..672 | 2580 | 100 | Plus |
3R | 32079331 | 3R | 19772486..19772948 | 648..186 | 935 | 80.1 | Minus |
3R | 32079331 | 3R | 19776544..19777033 | 648..159 | 935 | 79.4 | Minus |
3R | 32079331 | 3R | 19781308..19781451 | 17..160 | 720 | 100 | Plus |
3R | 32079331 | 3R | 19771476..19772166 | 1596..906 | 575 | 72.2 | Minus |
3R | 32079331 | 3R | 19775534..19776450 | 1596..680 | 550 | 70.7 | Minus |
3L | 28110227 | 3L | 5872944..5873104 | 1232..1392 | 235 | 76.4 | Plus |
3R | 32079331 | 3R | 19773042..19773175 | 150..17 | 220 | 77.6 | Minus |
3R | 32079331 | 3R | 19777097..19777230 | 150..17 | 220 | 77.6 | Minus |
3L | 28110227 | 3L | 5874981..5875206 | 1232..1457 | 200 | 72.6 | Plus |
3R | 32079331 | 3R | 19780226..19780341 | 1284..1399 | 190 | 77.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:32:39 has no hits.
BO08068.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:36 Download gff for
BO08068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-RA | 1..1617 | 17..1634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:14 Download gff for
BO08068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-RA | 55..1673 | 14..1634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:00 Download gff for
BO08068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-RA | 63..1672 | 17..1626 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:36 Download gff for
BO08068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-RA | 55..1673 | 14..1634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:00 Download gff for
BO08068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11407-RA | 63..1672 | 17..1626 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:00 Download gff for
BO08068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19781308..19781451 | 17..160 | 100 | -> | Plus |
3R | 19781511..19782022 | 161..672 | 100 | -> | Plus |
3R | 19782075..19783028 | 673..1626 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:00 Download gff for
BO08068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15607030..15607173 | 17..160 | 100 | -> | Plus |
arm_3R | 15607233..15607744 | 161..672 | 100 | -> | Plus |
arm_3R | 15607797..15608750 | 673..1626 | 100 | | Plus |
BO08068.pep Sequence
Translation from 16 to 1648
> BO08068.pep
MPYRPASYYDADRKIWSGDQLEYYFDPHLSIGEIIFNEMRRHPQLIAQIS
ATENTILTRAELQANAMHIASYMRSLGLLQMDIVGIIARNTTHISAVAYA
CFFNGIAFHSLNISYEQSTIEKLFSITRPNIIFCDGDEFEKVRSATAQLD
VKIITMRNHPSGSIRIDQVLSTPIEKNFQPVRLEQGNDQTLAILCSSGTT
GIPKAVTITNSRQILNSSHSLTTNDVQYSHSTLDWITGLLTTVTSGVFST
KRIIADNIFDPEFFMRLVEEHQITWIIQAPAHMAMMVNSPSFTTSDLSSL
RYYLFGGSRASVETQHRIRSRLSKDCLHFAYGFTELGSMAALNLHFDEKP
NSVGRLVAGLKLKVICEKGESLGPDEVGELCLWNGQYWAGYYGNPEETHK
MRDHHNWFHTGDLGYVDDDGFIYIVERKKDMLKFQNIMYYPNEIESVISK
MPDVVEVCVFGVWNEINGDEATAAVVKKRGSALTAQDIVDYVETHIDAKY
KQLNGGAIIVEDLVRSPNGKTNRMANKAFFLEAKSSAKASFLDH
BO08068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:37:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11407-PA | 538 | CG11407-PA | 1..538 | 1..538 | 2808 | 100 | Plus |
CG6300-PA | 537 | CG6300-PA | 1..535 | 1..535 | 2099 | 72.3 | Plus |
CG11659-PA | 546 | CG11659-PA | 1..535 | 1..535 | 2083 | 72 | Plus |
CG18586-PB | 545 | CG18586-PB | 17..540 | 9..532 | 1665 | 58.2 | Plus |
CG5568-PA | 545 | CG5568-PA | 10..539 | 2..531 | 1636 | 56.4 | Plus |