Clone BO08068 Report

Search the DGRC for BO08068

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:80
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG11407-RA
Protein status:BO08068.pep: validated full length
Sequenced Size:1648

Clone Sequence Records

BO08068.3prime Sequence

958 bp (855 high quality bases) assembled on 2006-01-06

> BO08068.3prime
ATGGTCTAGAAAGCTTGCTTTTGCTGAACTTTTGGCCTCCAAGAAAAATG
CTTTGTTTGCCATGCGGTTGGTTTTGCCATTGGGACTGCGCACCAGATCC
TCCACGATGATGGCACCTCCGTTCAACTGCTTGTACTTGGCATCGATATG
GGTCTCCACATAGTCCACAATGTCCTGGGCCGTGAGAGCACTACCCCGCT
TCTTGACCACGGCCGCGGTGGCCTCATCACCGTTGATCTCATTCCACACC
CCGAATACACAGACTTCAACCACGTCTGGCATCTTTGAGATGACACTCTC
GATTTCGTTGGGATAGTACATGATGTTCTGGAACTTAAGCATGTCCTTCT
TGCGCTCCACAATGTATATAAAGCCATCGTCATCCACGTATCCGAGGTCC
CCTGTGTGGAACCAGTTATGGTGGTCTCTCATTTTGTGTGTTTCCTCTGG
ATTGCCATAGTACCCGGCCCAATATTGACCATTCCAAAGGCACAGCTCAC
CCACCTCATCGGGCCCAAGGGATTCACCCTTTTCACAGATCACTTTAAGC
TTAAGTCCCGCCACCAAACGACCCACCGAATTCGGCTTCTCATCGAAGTG
TAAGTTCAAGGCGGCCATGCTGCCCAGTTCTGTAAAGCCGTAGGCAAAGT
GTAGGCAGTCCTTGCTTAGGCGACTCCTGATCCGATGCTGTGTCTCTACC
GAAGCCCGTGATCCTCCAAAAAGGTAGTACCTTAAGCTCGACAAGTCGGA
GGTGGTGAACGAGGGAGAGTTGACCATCATGGCCATGTGCGCGGGCGCTT
GATTATCCAAGTGATCTGGTGCTCTTCTACGAGTCGCATGAAGAACTCCG
GATCGAAGATATTATCTGCTATAATACGCTTGGTGCTGAATACCCCGGAT
GTTACAGTGGTAAGCAGACCCGTAATCCAGTCGAGAGTACTGTGGCTGTA
TTGAACGT

BO08068.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11407-PA 1617 CG11407-RA 831..1614 802..19 3920 100 Minus
CG11407-PA 1617 CG11407-RA 674..830 958..802 785 100 Minus
CG6300-PA 1614 CG6300-RA 1282..1355 351..278 145 87.8 Minus
CG11659-PA 1641 CG11659-RA 1282..1355 351..278 145 87.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11407-RA 1789 CG11407-RA 736..1676 958..19 4680 99.9 Minus
CG6300-RA 1724 CG6300-RA 940..1630 743..53 605 73.1 Minus
CG11659-RA 1705 CG11659-RA 940..1630 743..53 575 72.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19782092..19783032 958..19 4655 99.9 Minus
3R 32079331 3R 19771476..19772166 53..743 575 72.2 Plus
3R 32079331 3R 19775534..19776224 53..743 545 71.9 Plus
3L 28110227 3L 5872944..5873104 417..257 235 76.4 Minus
3L 28110227 3L 5874981..5875206 417..192 200 72.6 Minus
3R 32079331 3R 19780226..19780341 365..250 190 77.6 Minus
Blast to na_te.dros performed on 2015-02-04 20:34:57 has no hits.

BO08068.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:02 Download gff for BO08068.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11407-PA 674..1617 15..958 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:53 Download gff for BO08068.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11407-PA 674..1617 15..958 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:27:31 Download gff for BO08068.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11407-RA 736..1679 15..958 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:52:01 Download gff for BO08068.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11407-RA 736..1679 15..958 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:52:01 Download gff for BO08068.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19782092..19783035 15..958 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:27:31 Download gff for BO08068.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15607814..15608757 15..958 99   Minus

BO08068.5prime Sequence

926 bp (843 high quality bases) assembled on 2006-01-06

> BO08068.5prime
GAAGTTATCAGTCGACATGCCGTACAGACCAGCAAGCTATTACGATGCTG
ATCGCAAGATCTGGAGCGGAGACCAATTGGAATACTACTTCGACCCACAT
CTGTCCATCGGAGAGATTATATTCAACGAGATGCGGAGGCATCCACAGCT
CATCGCTCAGATCTCAGCTACGGAGAACACGATATTGACCAGGGCGGAAC
TTCAGGCCAATGCAATGCACATTGCCAGCTATATGCGATCTTTGGGCCTC
CTTCAAATGGATATAGTGGGCATTATAGCGAGGAATACCACCCACATTTC
AGCAGTGGCCTATGCCTGCTTCTTCAACGGCATTGCCTTTCACTCGCTCA
ACATCTCATATGAACAAAGTACAATCGAAAAGCTCTTTAGCATCACCAGG
CCAAATATCATTTTTTGTGATGGGGATGAGTTCGAGAAGGTCCGATCTGC
CACGGCACAACTGGATGTAAAGATAATCACCATGCGTAATCATCCATCGG
GTTCTATAAGGATCGATCAAGTCCTGTCAACTCCCATTGAGAAAAACTTC
CAGCCAGTACGGTTGGAACAGGGCAACGATCAGACTTTGGCCATTCTCTG
CTCCTCAGGCACAACGGGCATTCCAAAGGCTGTGACAATAACCAACAGCA
GACAGATCCTTAATTCCAGTCATTCCTTAACCACCAATGACGTTCAATAC
AGCCACAGTACTCTCGACTGGATTACGGGTCTGCTTACCACTGTAACATC
CGGGGTATTCAGCACCAAGCGTATTATAGCAGATAATATCTTCGATCCGG
AGTTCTTCATGCGACTCGTAGAAGAGCACCAGATCACTTGGATAATTTCA
GCGCCCGCGCACATGGCCATGATGGTCAACTCTCCCCTCGTCACCACCTC
CGACTTGTCGAGCTTAAGGTACTACC

BO08068.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11407-PA 1617 CG11407-RA 1..870 17..886 4300 99.7 Plus
CG11407-PA 1617 CG11407-RA 875..910 891..926 180 100 Plus
CG6300-PA 1614 CG6300-RA 548..587 564..603 175 97.5 Plus
CG11659-PA 1641 CG11659-RA 548..587 564..603 175 97.5 Plus
CG6300-PA 1614 CG6300-RA 403..479 419..495 160 88.3 Plus
CG11659-PA 1641 CG11659-RA 403..479 419..495 160 88.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG11407-RA 1789 CG11407-RA 63..972 17..926 4475 99.6 Plus
CG11659-RA 1705 CG11659-RA 51..832 17..798 1180 77.4 Plus
CG6300-RA 1724 CG6300-RA 51..799 17..765 1165 77.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19781507..19782022 157..672 2580 100 Plus
3R 32079331 3R 19782075..19782328 673..926 1180 97.6 Plus
3R 32079331 3R 19772486..19772948 648..186 935 80.1 Minus
3R 32079331 3R 19776544..19777033 648..159 935 79.4 Minus
3R 32079331 3R 19781308..19781451 17..160 720 100 Plus
3R 32079331 3R 19773042..19773175 150..17 220 77.6 Minus
3R 32079331 3R 19777097..19777230 150..17 220 77.6 Minus
Blast to na_te.dros performed on 2015-02-13 07:04:40 has no hits.

BO08068.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:03 Download gff for BO08068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11407-PA 1..910 17..926 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:26:55 Download gff for BO08068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11407-PA 1..910 17..926 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:10:06 Download gff for BO08068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11407-RA 61..972 14..926 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:28 Download gff for BO08068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11407-RA 61..972 14..926 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:28 Download gff for BO08068.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19782075..19782328 673..926 98   Plus
3R 19781306..19781451 14..160 99 -> Plus
3R 19781511..19782022 161..672 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:10:06 Download gff for BO08068.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15607028..15607173 14..160 99 -> Plus
arm_3R 15607233..15607744 161..672 100 -> Plus
arm_3R 15607797..15608050 673..926 98   Plus

BO08068.complete Sequence

1648 bp (1648 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631039

> BO08068.complete
GAAGTTATCAGTCGACATGCCGTACAGACCAGCAAGCTATTACGATGCTG
ATCGCAAGATCTGGAGCGGAGACCAATTGGAATACTACTTCGACCCACAT
CTGTCCATCGGAGAGATTATATTCAACGAGATGCGGAGGCATCCACAGCT
CATCGCTCAGATCTCAGCTACGGAGAACACGATATTGACCAGGGCGGAAC
TTCAGGCCAATGCAATGCACATTGCCAGCTATATGCGATCTTTGGGCCTC
CTTCAAATGGATATAGTGGGCATTATAGCGAGGAATACCACCCACATTTC
AGCAGTGGCCTATGCCTGCTTCTTCAACGGCATTGCCTTTCACTCGCTCA
ACATCTCATATGAACAAAGTACAATCGAAAAGCTCTTTAGCATCACCAGG
CCAAATATCATTTTTTGTGATGGGGATGAGTTCGAGAAGGTCCGATCTGC
CACGGCACAACTGGATGTAAAGATAATCACCATGCGTAATCATCCATCGG
GTTCTATAAGGATCGATCAAGTCCTGTCAACTCCCATTGAGAAAAACTTC
CAGCCAGTACGGTTGGAACAGGGCAACGATCAGACTTTGGCCATTCTCTG
CTCCTCAGGCACAACGGGCATTCCAAAGGCTGTGACAATAACCAACAGCA
GACAGATCCTTAATTCCAGTCATTCCTTAACCACCAATGACGTTCAATAC
AGCCACAGTACTCTCGACTGGATTACGGGTCTGCTTACCACTGTAACATC
CGGGGTATTCAGCACCAAGCGTATTATAGCAGATAATATCTTCGATCCGG
AGTTCTTCATGCGACTCGTAGAAGAGCACCAGATCACTTGGATAATTCAA
GCGCCCGCGCACATGGCCATGATGGTCAACTCTCCCTCGTTCACCACCTC
CGACTTGTCGAGCTTAAGGTACTACCTTTTTGGAGGATCACGGGCTTCGG
TAGAGACACAGCATCGGATCAGGAGTCGCCTAAGCAAGGACTGCCTACAC
TTTGCCTACGGCTTTACAGAACTGGGCAGCATGGCCGCCTTGAACTTACA
CTTCGATGAGAAGCCGAATTCGGTGGGTCGTTTGGTGGCGGGACTTAAGC
TTAAAGTGATCTGTGAAAAGGGTGAATCCCTTGGGCCCGATGAGGTGGGT
GAGCTGTGCCTTTGGAATGGTCAATATTGGGCCGGGTACTATGGCAATCC
AGAGGAAACACACAAAATGAGAGACCACCATAACTGGTTCCACACAGGGG
ACCTCGGATACGTGGATGACGATGGCTTTATATACATTGTGGAGCGCAAG
AAGGACATGCTTAAGTTCCAGAACATCATGTACTATCCCAACGAAATCGA
GAGTGTCATCTCAAAGATGCCAGACGTGGTTGAAGTCTGTGTATTCGGGG
TGTGGAATGAGATCAACGGTGATGAGGCCACCGCGGCCGTGGTCAAGAAG
CGGGGTAGTGCTCTCACGGCCCAGGACATTGTGGACTATGTGGAGACCCA
TATCGATGCCAAGTACAAGCAGTTGAACGGAGGTGCCATCATCGTGGAGG
ATCTGGTGCGCAGTCCCAATGGCAAAACCAACCGCATGGCAAACAAAGCA
TTTTTCTTGGAGGCCAAAAGTTCAGCAAAAGCAAGCTTTCTAGACCAT

BO08068.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11407-RA 1617 CG11407-PA 1..1614 17..1630 8070 100 Plus
CG6300-RA 1614 CG6300-PA 1..1580 17..1596 1585 73.4 Plus
CG11659-RA 1641 CG11659-PA 1..1580 17..1596 1570 73.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11407-RA 1789 CG11407-RA 63..1676 17..1630 8070 100 Plus
CG6300-RA 1724 CG6300-RA 51..1630 17..1596 1585 73.4 Plus
CG11659-RA 1705 CG11659-RA 51..1630 17..1596 1570 73.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19782075..19783032 673..1630 4790 100 Plus
3R 32079331 3R 19781507..19782022 157..672 2580 100 Plus
3R 32079331 3R 19772486..19772948 648..186 935 80.1 Minus
3R 32079331 3R 19776544..19777033 648..159 935 79.4 Minus
3R 32079331 3R 19781308..19781451 17..160 720 100 Plus
3R 32079331 3R 19771476..19772166 1596..906 575 72.2 Minus
3R 32079331 3R 19775534..19776450 1596..680 550 70.7 Minus
3L 28110227 3L 5872944..5873104 1232..1392 235 76.4 Plus
3R 32079331 3R 19773042..19773175 150..17 220 77.6 Minus
3R 32079331 3R 19777097..19777230 150..17 220 77.6 Minus
3L 28110227 3L 5874981..5875206 1232..1457 200 72.6 Plus
3R 32079331 3R 19780226..19780341 1284..1399 190 77.6 Plus
Blast to na_te.dros performed on 2014-11-27 14:32:39 has no hits.

BO08068.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:36 Download gff for BO08068.complete
Subject Subject Range Query Range Percent Splice Strand
CG11407-RA 1..1617 17..1634 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:14 Download gff for BO08068.complete
Subject Subject Range Query Range Percent Splice Strand
CG11407-RA 55..1673 14..1634 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:00 Download gff for BO08068.complete
Subject Subject Range Query Range Percent Splice Strand
CG11407-RA 63..1672 17..1626 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:36 Download gff for BO08068.complete
Subject Subject Range Query Range Percent Splice Strand
CG11407-RA 55..1673 14..1634 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:00 Download gff for BO08068.complete
Subject Subject Range Query Range Percent Splice Strand
CG11407-RA 63..1672 17..1626 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:00 Download gff for BO08068.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19781308..19781451 17..160 100 -> Plus
3R 19781511..19782022 161..672 100 -> Plus
3R 19782075..19783028 673..1626 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:00 Download gff for BO08068.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15607030..15607173 17..160 100 -> Plus
arm_3R 15607233..15607744 161..672 100 -> Plus
arm_3R 15607797..15608750 673..1626 100   Plus

BO08068.pep Sequence

Translation from 16 to 1648

> BO08068.pep
MPYRPASYYDADRKIWSGDQLEYYFDPHLSIGEIIFNEMRRHPQLIAQIS
ATENTILTRAELQANAMHIASYMRSLGLLQMDIVGIIARNTTHISAVAYA
CFFNGIAFHSLNISYEQSTIEKLFSITRPNIIFCDGDEFEKVRSATAQLD
VKIITMRNHPSGSIRIDQVLSTPIEKNFQPVRLEQGNDQTLAILCSSGTT
GIPKAVTITNSRQILNSSHSLTTNDVQYSHSTLDWITGLLTTVTSGVFST
KRIIADNIFDPEFFMRLVEEHQITWIIQAPAHMAMMVNSPSFTTSDLSSL
RYYLFGGSRASVETQHRIRSRLSKDCLHFAYGFTELGSMAALNLHFDEKP
NSVGRLVAGLKLKVICEKGESLGPDEVGELCLWNGQYWAGYYGNPEETHK
MRDHHNWFHTGDLGYVDDDGFIYIVERKKDMLKFQNIMYYPNEIESVISK
MPDVVEVCVFGVWNEINGDEATAAVVKKRGSALTAQDIVDYVETHIDAKY
KQLNGGAIIVEDLVRSPNGKTNRMANKAFFLEAKSSAKASFLDH

BO08068.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11407-PA 538 CG11407-PA 1..538 1..538 2808 100 Plus
CG6300-PA 537 CG6300-PA 1..535 1..535 2099 72.3 Plus
CG11659-PA 546 CG11659-PA 1..535 1..535 2083 72 Plus
CG18586-PB 545 CG18586-PB 17..540 9..532 1665 58.2 Plus
CG5568-PA 545 CG5568-PA 10..539 2..531 1636 56.4 Plus