Clone Sequence Records
BO08073.3prime Sequence
997 bp (869 high quality bases) assembled on 2006-01-06
> BO08073.3prime
ATGGTCTAGAAAGCTTGCAACGCAATTCCGCCTCACAAGCTTGACTTTTA
TTTTATTTTTGAAGCGCAAGGTTATGCCCACTTGGAAGACAATGGACTTG
GGATCGATAACAGGCAGAATCTTGAAATGCTTGAGGATGACCACCATCAG
GGTCTTCATCTCCTGCATGGCGTACTTCTGGCCTATGCAGTTCCTTTGTC
CAGCACTGAAGGGAATGTAGGCGTAAGGATGCCTTTTCAGGCAGTTCTGA
GGTAGGAATCGCTCTGGGCGGAATTCTTCGGGCGATTCCCAATACTTGGG
ATTGCGATGGATGTCAAAGACGTGTATATTAATCTGAGAGCGCTTCGGCA
GGATTAGGCCATTCTCTAGTTCCGTTTCCTGGAGTGTCTGACGACCCATG
ATGGGAATCGAAGGATACAGGCGCATGGTTTCCTTTATAAAGTAGCCCAG
ATAATTTAGTTTACTTAGTTGACTTAGGTTCAGGTTGCTCAGGTCGTCCA
GAATGTGCTCCTGGATCTCTTGGTAGCACAGTTCCTGTTCAGCGGCATAT
AGAGACATATTCATTAGGCCAAAGACCAGACCAATGGATGTGGTATCGTA
ACCTTCAGCCATCAGCGTGTCCACCTCCTCAGAAATCCCAATATCGTCGA
TTAGTCCATCCTTTTCGGCGCAAATCAAGGTGTCCAGCATGGCGAAGCGT
TTCTTTCTAATCACGCATATATCATCGTCAGCCGTTTGAGTGGCTCTTCT
ATTTTCCAGCTCCTCTTCAAGTAGTACTCTGCGTTTTGCGATTATCTCTC
TGGAAAATTCGTGTACCACTTTTAGAGCTGCGTTGTACTTGTGTCCCGTG
AACATGTTGTATACACAATCGTCCCCATAGAGCGGGGTTACTATGCGCCT
GGTAAGTCCTTCGTCGATTATGTGAAAGTTCGCCCTGTAGCGATCGCCCT
TCTCTGCCATTTTCATCAGTTTTGATCCCATGGCAGTTTCACAAATG
BO08073.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1944-PA | 1563 | Cyp4p2-RA | 617..1560 | 962..19 | 4670 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:37:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4p2-RA | 1777 | CG1944-RA | 622..1600 | 997..19 | 4775 | 99.4 | Minus |
Cyp4p1-RA | 1680 | CG10842-RA | 899..1576 | 706..29 | 900 | 75.7 | Minus |
Cyp4p3-RA | 1667 | CG10843-RA | 794..1528 | 819..82 | 830 | 74.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9239098..9239419 | 503..182 | 1595 | 99.7 | Minus |
2R | 25286936 | 2R | 9238489..9238760 | 990..719 | 1225 | 96.7 | Minus |
2R | 25286936 | 2R | 9238819..9239039 | 718..498 | 1105 | 100 | Minus |
2R | 25286936 | 2R | 9239489..9239654 | 184..19 | 830 | 100 | Minus |
2R | 25286936 | 2R | 9241539..9241808 | 463..194 | 420 | 77 | Minus |
2R | 25286936 | 2R | 9243842..9244112 | 452..182 | 395 | 76.4 | Minus |
2R | 25286936 | 2R | 9243538..9243725 | 699..512 | 385 | 80.3 | Minus |
2R | 25286936 | 2R | 9241242..9241398 | 706..550 | 350 | 81.5 | Minus |
2R | 25286936 | 2R | 9241887..9242035 | 177..29 | 220 | 76.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:37:09 has no hits.
BO08073.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:09 Download gff for
BO08073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1944-PA | 582..1563 | 18..997 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:04 Download gff for
BO08073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1944-PA | 582..1563 | 18..997 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:38:17 Download gff for
BO08073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4p2-RA | 622..1600 | 19..997 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:32 Download gff for
BO08073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4p2-RA | 622..1600 | 19..997 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:32 Download gff for
BO08073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9239104..9239418 | 183..497 | 100 | -> | Minus |
2R | 9239491..9239654 | 19..182 | 100 | | Minus |
2R | 9238485..9238760 | 719..997 | 96 | -> | Minus |
2R | 9238819..9239039 | 498..718 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:38:17 Download gff for
BO08073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5125990..5126265 | 719..997 | 96 | -> | Minus |
arm_2R | 5126324..5126544 | 498..718 | 100 | -> | Minus |
arm_2R | 5126609..5126923 | 183..497 | 100 | -> | Minus |
arm_2R | 5126996..5127159 | 19..182 | 100 | | Minus |
BO08073.5prime Sequence
923 bp (793 high quality bases) assembled on 2006-01-06
> BO08073.5prime
GAAGTTATCAGTCGACATGATGATTTGTCTTCTGTGGATTTCGGTGGCCA
TACTTGTGGTCATCCACTGGATCTATAAGGTAAACAAAGACTACAATATC
CTGGCCTTTTTCGCCCGAAGGGTTCAAACCAAGGATGGCAAACCATTGGA
CAGCTTAGTGCCCATGATCAAGGGCCGAACTGTGTTCGCCAACTGCTTCG
ATCTCTTAGGAAAAGACACTGACCAGGTATTTACTCACTTACGCCAGTTG
GCGAAGAACAGCGGAGACAGTTATCTGCAGTACTCCATGGGGTTTTCCAA
CTTCAATGTTATAGATGCGCATAATGCAGCGAACATATTGAATCATCCTA
ATCTGATAACGAAGGGTGTAATATATAATTTTCTTCACCCTTTCCTAAGA
ACTGGCGTTCTAACAGCGACAGAAAAGAAATGGCACACGCGACGCAGTAT
GCTCACTAGGACATTCCATTTGGATATATTGAACCAGTTCCAAGAAATCT
TTATAGCGGAGAGCTTGAAGTTCGTAAGTCAGTTCCAAGGACAAAATGAA
GTTGTGGTTTCTTTGAAGGACCGCATATCCCGATTTACCCTAAATAGCAT
TTGTGAAACTGCCATGGGAATCAAACTGGATGAAATGGCAGAGAAGGGCG
ATCGCTACAGGGCGAACTTTCACATAATCGACGAAGGACTTACCAGGCGC
ATAGTANACCCGCTCTATTGGGACGATTGTGTATACAACATGTTCACGGG
ACACAAGTACAACGCAGCTCTAANAGTGGTACACGAATTTTCCAGAGAGA
TAATCGCAAAACGCAGAGTACTACTTGAAGAGGAGCTGGAAAATAGAAGA
GCCACTCAAACGGCTGACGATGATATATGCGTGATTAGAAAGAAACGCTT
CGCCATGCTGGACACCTTGATTT
BO08073.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1944-PA | 1563 | Cyp4p2-RA | 1..907 | 17..923 | 4497 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:31:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4p2-RA | 1777 | CG1944-RA | 39..947 | 15..923 | 4523 | 99.8 | Plus |
Cyp4p3-RA | 1667 | CG10843-RA | 315..687 | 297..669 | 345 | 74.3 | Plus |
Cyp4p1-RA | 1680 | CG10842-RA | 358..688 | 339..669 | 305 | 73.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:31:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9238489..9238760 | 605..876 | 1338 | 99.3 | Plus |
2R | 25286936 | 2R | 9237550..9237756 | 15..221 | 1035 | 100 | Plus |
2R | 25286936 | 2R | 9237836..9238037 | 221..422 | 1010 | 100 | Plus |
2R | 25286936 | 2R | 9238331..9238431 | 505..605 | 505 | 100 | Plus |
2R | 25286936 | 2R | 9238089..9238173 | 420..504 | 425 | 100 | Plus |
2R | 25286936 | 2R | 9238819..9238865 | 877..923 | 235 | 100 | Plus |
2R | 25286936 | 2R | 9240609..9240684 | 428..503 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:31:38 has no hits.
BO08073.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:10 Download gff for
BO08073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1944-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:06 Download gff for
BO08073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1944-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:50:10 Download gff for
BO08073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4p2-RA | 30..947 | 3..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:04:52 Download gff for
BO08073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4p2-RA | 30..947 | 3..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:04:52 Download gff for
BO08073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9237541..9237756 | 3..221 | 97 | -> | Plus |
2R | 9237837..9238037 | 222..422 | 100 | -> | Plus |
2R | 9238092..9238173 | 423..504 | 100 | -> | Plus |
2R | 9238331..9238431 | 505..605 | 100 | -> | Plus |
2R | 9238490..9238760 | 606..876 | 99 | -> | Plus |
2R | 9238819..9238865 | 877..923 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:50:10 Download gff for
BO08073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5125836..5125936 | 505..605 | 100 | -> | Plus |
arm_2R | 5125995..5126265 | 606..876 | 99 | -> | Plus |
arm_2R | 5126324..5126370 | 877..923 | 100 | | Plus |
arm_2R | 5125046..5125261 | 3..221 | 97 | -> | Plus |
arm_2R | 5125342..5125542 | 222..422 | 100 | -> | Plus |
arm_2R | 5125597..5125678 | 423..504 | 100 | -> | Plus |
BO08073.complete Sequence
1594 bp (1594 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631040
> BO08073.complete
GAAGTTATCAGTCGACATGATGATTTGTCTTCTGTGGATTTCGGTGGCCA
TACTTGTGGTCATCCACTGGATCTATAAGGTAAACAAAGACTACAATATC
CTGGCCTTTTTCGCCCGAAGGGTTCAAACCAAGGATGGCAAACCATTGGA
CAGCTTAGTGCCCATGATCAAGGGCCGAACTGTGTTCGCCAACTGCTTCG
ATCTCTTAGGAAAAGACACTGACCAGGTATTTACTCACTTACGCCAGTTG
GCGAAGAACAGCGGAGACAGTTATCTGCAGTACTCCATGGGGTTTTCCAA
CTTCAATGTTATAGATGCGCATAATGCAGCGAACATATTGAATCATCCTA
ATCTGATAACGAAGGGTGTAATATATAATTTTCTTCACCCTTTCCTAAGA
ACTGGCGTTCTAACAGCGACAGAAAAGAAATGGCACACGCGACGCAGTAT
GCTCACTAGGACATTCCATTTGGATATATTGAACCAGTTCCAAGAAATCT
TTATAGCGGAGAGCTTGAAGTTCGTAAGTCAGTTCCAAGGACAAAATGAA
GTTGTGGTTTCTTTGAAGGACCGCATATCCCGATTTACCCTAAATAGCAT
TTGTGAAACTGCCATGGGAATCAAACTGGATGAAATGGCAGAGAAGGGCG
ATCGCTACAGGGCGAACTTTCACATAATCGACGAAGGACTTACCAGGCGC
ATAGTAAACCCGCTCTATTGGGACGATTGTGTATACAACATGTTCACGGG
ACACAAGTACAACGCAGCTCTAAAAGTGGTACACGAATTTTCCAGAGAGA
TAATCGCAAAACGCAGAGTACTACTTGAAGAGGAGCTGGAAAATAGAAGA
GCCACTCAAACGGCTGACGATGATATATGCGTGATTAGAAAGAAACGCTT
CGCCATGCTGGACACCTTGATTTGCGCCGAAAAGGATGGACTAATCGACG
ATATTGGGATTTCTGAGGAGGTGGACACGCTGATGGCTGAAGGTTACGAT
ACCACATCCATTGGTCTGGTCTTTGGCCTAATGAATATGTCTCTATATGC
CGCTGAACAGGAACTGTGCTACCAAGAGATCCAGGAGCACATTCTGGACG
ACCTGAGCAACCTGAACCTAAGTCAACTAAGTAAACTAAATTATCTGGGC
TACTTTATAAAGGAAACCATGCGCCTGTATCCTTCGATTCCCATCATGGG
TCGTCAGACACTCCAGGAAACGGAACTAGAGAATGGCCTAATCCTGCCGA
AGCGCTCTCAGATTAATATACACGTCTTTGACATCCATCGCAATCCCAAG
TATTGGGAATCGCCCGAAGAATTCCGCCCAGAGCGATTCCTACCTCAGAA
CTGCCTGAAAAGGCATCCTTACGCCTACATTCCCTTCAGTGCTGGACAAA
GGAACTGCATAGGCCAGAAGTACGCCATGCAGGAGATGAAGACCCTGATG
GTGGTCATCCTCAAGCATTTCAAGATTCTGCCTGTTATCGATCCCAAGTC
CATTGTCTTCCAAGTGGGCATAACCTTGCGCTTCAAAAATAAAATAAAAG
TCAAGCTTGTGAGGCGGAATTGCGTTGCAAGCTTTCTAGACCAT
BO08073.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:44:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4p2-RA | 1563 | CG1944-PA | 1..1560 | 17..1576 | 7800 | 100 | Plus |
Cyp4p3-RA | 1548 | CG10843-PA | 319..1488 | 341..1513 | 925 | 72.1 | Plus |
Cyp4p1-RA | 1542 | CG10842-PA | 858..1535 | 889..1566 | 900 | 75.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4p2-RA | 1777 | CG1944-RA | 39..1600 | 15..1576 | 7810 | 100 | Plus |
Cyp4p3-RA | 1667 | CG10843-RA | 359..1528 | 341..1513 | 925 | 72.1 | Plus |
Cyp4p1-RA | 1680 | CG10842-RA | 899..1576 | 889..1566 | 900 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:44:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9239098..9239419 | 1092..1413 | 1595 | 99.7 | Plus |
2R | 25286936 | 2R | 9238489..9238760 | 605..876 | 1360 | 100 | Plus |
2R | 25286936 | 2R | 9238819..9239039 | 877..1097 | 1105 | 100 | Plus |
2R | 25286936 | 2R | 9237550..9237756 | 15..221 | 1035 | 100 | Plus |
2R | 25286936 | 2R | 9237836..9238037 | 221..422 | 1010 | 100 | Plus |
2R | 25286936 | 2R | 9239489..9239654 | 1411..1576 | 830 | 100 | Plus |
2R | 25286936 | 2R | 9238331..9238431 | 505..605 | 505 | 100 | Plus |
2R | 25286936 | 2R | 9238089..9238173 | 420..504 | 425 | 100 | Plus |
2R | 25286936 | 2R | 9241539..9241808 | 1132..1401 | 420 | 77 | Plus |
2R | 25286936 | 2R | 9243842..9244112 | 1143..1413 | 395 | 76.4 | Plus |
2R | 25286936 | 2R | 9243538..9243725 | 896..1083 | 385 | 80.3 | Plus |
2R | 25286936 | 2R | 9241242..9241398 | 889..1045 | 350 | 81.5 | Plus |
2R | 25286936 | 2R | 9241887..9242035 | 1418..1566 | 220 | 76.5 | Plus |
2R | 25286936 | 2R | 9240609..9240684 | 428..503 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:44:46 has no hits.
BO08073.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:23 Download gff for
BO08073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4p2-RA | 1..1563 | 17..1577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:57 Download gff for
BO08073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4p2-RA | 12..1582 | 3..1576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:55 Download gff for
BO08073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4p2-RA | 41..1600 | 17..1578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:24 Download gff for
BO08073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4p2-RA | 12..1582 | 3..1576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:21 Download gff for
BO08073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4p2-RA | 41..1600 | 17..1578 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:21 Download gff for
BO08073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9237552..9237756 | 17..221 | 100 | -> | Plus |
2R | 9237837..9238037 | 222..422 | 100 | -> | Plus |
2R | 9238092..9238173 | 423..504 | 100 | -> | Plus |
2R | 9238331..9238431 | 505..605 | 100 | -> | Plus |
2R | 9238490..9238760 | 606..876 | 100 | -> | Plus |
2R | 9238819..9239039 | 877..1097 | 100 | -> | Plus |
2R | 9239104..9239418 | 1098..1412 | 100 | -> | Plus |
2R | 9239491..9239654 | 1413..1578 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:55 Download gff for
BO08073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5125057..5125261 | 17..221 | 100 | -> | Plus |
arm_2R | 5125342..5125542 | 222..422 | 100 | -> | Plus |
arm_2R | 5125597..5125678 | 423..504 | 100 | -> | Plus |
arm_2R | 5125836..5125936 | 505..605 | 100 | -> | Plus |
arm_2R | 5125995..5126265 | 606..876 | 100 | -> | Plus |
arm_2R | 5126324..5126544 | 877..1097 | 100 | -> | Plus |
arm_2R | 5126609..5126923 | 1098..1412 | 100 | -> | Plus |
arm_2R | 5126996..5127159 | 1413..1578 | 98 | | Plus |
BO08073.pep Sequence
Translation from 16 to 1594
> BO08073.pep
MMICLLWISVAILVVIHWIYKVNKDYNILAFFARRVQTKDGKPLDSLVPM
IKGRTVFANCFDLLGKDTDQVFTHLRQLAKNSGDSYLQYSMGFSNFNVID
AHNAANILNHPNLITKGVIYNFLHPFLRTGVLTATEKKWHTRRSMLTRTF
HLDILNQFQEIFIAESLKFVSQFQGQNEVVVSLKDRISRFTLNSICETAM
GIKLDEMAEKGDRYRANFHIIDEGLTRRIVNPLYWDDCVYNMFTGHKYNA
ALKVVHEFSREIIAKRRVLLEEELENRRATQTADDDICVIRKKRFAMLDT
LICAEKDGLIDDIGISEEVDTLMAEGYDTTSIGLVFGLMNMSLYAAEQEL
CYQEIQEHILDDLSNLNLSQLSKLNYLGYFIKETMRLYPSIPIMGRQTLQ
ETELENGLILPKRSQINIHVFDIHRNPKYWESPEEFRPERFLPQNCLKRH
PYAYIPFSAGQRNCIGQKYAMQEMKTLMVVILKHFKILPVIDPKSIVFQV
GITLRFKNKIKVKLVRRNCVASFLDH
BO08073.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4p2-PA | 520 | CG1944-PA | 1..520 | 1..520 | 2710 | 100 | Plus |
Cyp4p3-PA | 515 | CG10843-PA | 3..514 | 5..517 | 1811 | 67.4 | Plus |
Cyp4p1-PA | 513 | CG10842-PA | 3..512 | 5..517 | 1802 | 66.3 | Plus |
Cyp4ac1-PA | 509 | CG14032-PA | 1..507 | 1..517 | 1070 | 42.2 | Plus |
Cyp4ac2-PB | 511 | CG17970-PB | 1..508 | 1..517 | 1017 | 40.8 | Plus |