Clone BO08073 Report

Search the DGRC for BO08073

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:80
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCyp4p2-RA
Protein status:BO08073.pep: validated full length
Sequenced Size:1594

Clone Sequence Records

BO08073.3prime Sequence

997 bp (869 high quality bases) assembled on 2006-01-06

> BO08073.3prime
ATGGTCTAGAAAGCTTGCAACGCAATTCCGCCTCACAAGCTTGACTTTTA
TTTTATTTTTGAAGCGCAAGGTTATGCCCACTTGGAAGACAATGGACTTG
GGATCGATAACAGGCAGAATCTTGAAATGCTTGAGGATGACCACCATCAG
GGTCTTCATCTCCTGCATGGCGTACTTCTGGCCTATGCAGTTCCTTTGTC
CAGCACTGAAGGGAATGTAGGCGTAAGGATGCCTTTTCAGGCAGTTCTGA
GGTAGGAATCGCTCTGGGCGGAATTCTTCGGGCGATTCCCAATACTTGGG
ATTGCGATGGATGTCAAAGACGTGTATATTAATCTGAGAGCGCTTCGGCA
GGATTAGGCCATTCTCTAGTTCCGTTTCCTGGAGTGTCTGACGACCCATG
ATGGGAATCGAAGGATACAGGCGCATGGTTTCCTTTATAAAGTAGCCCAG
ATAATTTAGTTTACTTAGTTGACTTAGGTTCAGGTTGCTCAGGTCGTCCA
GAATGTGCTCCTGGATCTCTTGGTAGCACAGTTCCTGTTCAGCGGCATAT
AGAGACATATTCATTAGGCCAAAGACCAGACCAATGGATGTGGTATCGTA
ACCTTCAGCCATCAGCGTGTCCACCTCCTCAGAAATCCCAATATCGTCGA
TTAGTCCATCCTTTTCGGCGCAAATCAAGGTGTCCAGCATGGCGAAGCGT
TTCTTTCTAATCACGCATATATCATCGTCAGCCGTTTGAGTGGCTCTTCT
ATTTTCCAGCTCCTCTTCAAGTAGTACTCTGCGTTTTGCGATTATCTCTC
TGGAAAATTCGTGTACCACTTTTAGAGCTGCGTTGTACTTGTGTCCCGTG
AACATGTTGTATACACAATCGTCCCCATAGAGCGGGGTTACTATGCGCCT
GGTAAGTCCTTCGTCGATTATGTGAAAGTTCGCCCTGTAGCGATCGCCCT
TCTCTGCCATTTTCATCAGTTTTGATCCCATGGCAGTTTCACAAATG

BO08073.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1944-PA 1563 Cyp4p2-RA 617..1560 962..19 4670 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4p2-RA 1777 CG1944-RA 622..1600 997..19 4775 99.4 Minus
Cyp4p1-RA 1680 CG10842-RA 899..1576 706..29 900 75.7 Minus
Cyp4p3-RA 1667 CG10843-RA 794..1528 819..82 830 74.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9239098..9239419 503..182 1595 99.7 Minus
2R 25286936 2R 9238489..9238760 990..719 1225 96.7 Minus
2R 25286936 2R 9238819..9239039 718..498 1105 100 Minus
2R 25286936 2R 9239489..9239654 184..19 830 100 Minus
2R 25286936 2R 9241539..9241808 463..194 420 77 Minus
2R 25286936 2R 9243842..9244112 452..182 395 76.4 Minus
2R 25286936 2R 9243538..9243725 699..512 385 80.3 Minus
2R 25286936 2R 9241242..9241398 706..550 350 81.5 Minus
2R 25286936 2R 9241887..9242035 177..29 220 76.5 Minus
Blast to na_te.dros performed on 2015-02-12 04:37:09 has no hits.

BO08073.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:09 Download gff for BO08073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1944-PA 582..1563 18..997 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:04 Download gff for BO08073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1944-PA 582..1563 18..997 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:38:17 Download gff for BO08073.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4p2-RA 622..1600 19..997 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:32 Download gff for BO08073.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4p2-RA 622..1600 19..997 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:32 Download gff for BO08073.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9239104..9239418 183..497 100 -> Minus
2R 9239491..9239654 19..182 100   Minus
2R 9238485..9238760 719..997 96 -> Minus
2R 9238819..9239039 498..718 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:38:17 Download gff for BO08073.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5125990..5126265 719..997 96 -> Minus
arm_2R 5126324..5126544 498..718 100 -> Minus
arm_2R 5126609..5126923 183..497 100 -> Minus
arm_2R 5126996..5127159 19..182 100   Minus

BO08073.5prime Sequence

923 bp (793 high quality bases) assembled on 2006-01-06

> BO08073.5prime
GAAGTTATCAGTCGACATGATGATTTGTCTTCTGTGGATTTCGGTGGCCA
TACTTGTGGTCATCCACTGGATCTATAAGGTAAACAAAGACTACAATATC
CTGGCCTTTTTCGCCCGAAGGGTTCAAACCAAGGATGGCAAACCATTGGA
CAGCTTAGTGCCCATGATCAAGGGCCGAACTGTGTTCGCCAACTGCTTCG
ATCTCTTAGGAAAAGACACTGACCAGGTATTTACTCACTTACGCCAGTTG
GCGAAGAACAGCGGAGACAGTTATCTGCAGTACTCCATGGGGTTTTCCAA
CTTCAATGTTATAGATGCGCATAATGCAGCGAACATATTGAATCATCCTA
ATCTGATAACGAAGGGTGTAATATATAATTTTCTTCACCCTTTCCTAAGA
ACTGGCGTTCTAACAGCGACAGAAAAGAAATGGCACACGCGACGCAGTAT
GCTCACTAGGACATTCCATTTGGATATATTGAACCAGTTCCAAGAAATCT
TTATAGCGGAGAGCTTGAAGTTCGTAAGTCAGTTCCAAGGACAAAATGAA
GTTGTGGTTTCTTTGAAGGACCGCATATCCCGATTTACCCTAAATAGCAT
TTGTGAAACTGCCATGGGAATCAAACTGGATGAAATGGCAGAGAAGGGCG
ATCGCTACAGGGCGAACTTTCACATAATCGACGAAGGACTTACCAGGCGC
ATAGTANACCCGCTCTATTGGGACGATTGTGTATACAACATGTTCACGGG
ACACAAGTACAACGCAGCTCTAANAGTGGTACACGAATTTTCCAGAGAGA
TAATCGCAAAACGCAGAGTACTACTTGAAGAGGAGCTGGAAAATAGAAGA
GCCACTCAAACGGCTGACGATGATATATGCGTGATTAGAAAGAAACGCTT
CGCCATGCTGGACACCTTGATTT

BO08073.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1944-PA 1563 Cyp4p2-RA 1..907 17..923 4497 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4p2-RA 1777 CG1944-RA 39..947 15..923 4523 99.8 Plus
Cyp4p3-RA 1667 CG10843-RA 315..687 297..669 345 74.3 Plus
Cyp4p1-RA 1680 CG10842-RA 358..688 339..669 305 73.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9238489..9238760 605..876 1338 99.3 Plus
2R 25286936 2R 9237550..9237756 15..221 1035 100 Plus
2R 25286936 2R 9237836..9238037 221..422 1010 100 Plus
2R 25286936 2R 9238331..9238431 505..605 505 100 Plus
2R 25286936 2R 9238089..9238173 420..504 425 100 Plus
2R 25286936 2R 9238819..9238865 877..923 235 100 Plus
2R 25286936 2R 9240609..9240684 428..503 185 82.9 Plus
Blast to na_te.dros performed on 2015-02-12 00:31:38 has no hits.

BO08073.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:10 Download gff for BO08073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1944-PA 1..907 17..923 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:06 Download gff for BO08073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1944-PA 1..907 17..923 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:50:10 Download gff for BO08073.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4p2-RA 30..947 3..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:04:52 Download gff for BO08073.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4p2-RA 30..947 3..923 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:04:52 Download gff for BO08073.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9237541..9237756 3..221 97 -> Plus
2R 9237837..9238037 222..422 100 -> Plus
2R 9238092..9238173 423..504 100 -> Plus
2R 9238331..9238431 505..605 100 -> Plus
2R 9238490..9238760 606..876 99 -> Plus
2R 9238819..9238865 877..923 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:50:10 Download gff for BO08073.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5125836..5125936 505..605 100 -> Plus
arm_2R 5125995..5126265 606..876 99 -> Plus
arm_2R 5126324..5126370 877..923 100   Plus
arm_2R 5125046..5125261 3..221 97 -> Plus
arm_2R 5125342..5125542 222..422 100 -> Plus
arm_2R 5125597..5125678 423..504 100 -> Plus

BO08073.complete Sequence

1594 bp (1594 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631040

> BO08073.complete
GAAGTTATCAGTCGACATGATGATTTGTCTTCTGTGGATTTCGGTGGCCA
TACTTGTGGTCATCCACTGGATCTATAAGGTAAACAAAGACTACAATATC
CTGGCCTTTTTCGCCCGAAGGGTTCAAACCAAGGATGGCAAACCATTGGA
CAGCTTAGTGCCCATGATCAAGGGCCGAACTGTGTTCGCCAACTGCTTCG
ATCTCTTAGGAAAAGACACTGACCAGGTATTTACTCACTTACGCCAGTTG
GCGAAGAACAGCGGAGACAGTTATCTGCAGTACTCCATGGGGTTTTCCAA
CTTCAATGTTATAGATGCGCATAATGCAGCGAACATATTGAATCATCCTA
ATCTGATAACGAAGGGTGTAATATATAATTTTCTTCACCCTTTCCTAAGA
ACTGGCGTTCTAACAGCGACAGAAAAGAAATGGCACACGCGACGCAGTAT
GCTCACTAGGACATTCCATTTGGATATATTGAACCAGTTCCAAGAAATCT
TTATAGCGGAGAGCTTGAAGTTCGTAAGTCAGTTCCAAGGACAAAATGAA
GTTGTGGTTTCTTTGAAGGACCGCATATCCCGATTTACCCTAAATAGCAT
TTGTGAAACTGCCATGGGAATCAAACTGGATGAAATGGCAGAGAAGGGCG
ATCGCTACAGGGCGAACTTTCACATAATCGACGAAGGACTTACCAGGCGC
ATAGTAAACCCGCTCTATTGGGACGATTGTGTATACAACATGTTCACGGG
ACACAAGTACAACGCAGCTCTAAAAGTGGTACACGAATTTTCCAGAGAGA
TAATCGCAAAACGCAGAGTACTACTTGAAGAGGAGCTGGAAAATAGAAGA
GCCACTCAAACGGCTGACGATGATATATGCGTGATTAGAAAGAAACGCTT
CGCCATGCTGGACACCTTGATTTGCGCCGAAAAGGATGGACTAATCGACG
ATATTGGGATTTCTGAGGAGGTGGACACGCTGATGGCTGAAGGTTACGAT
ACCACATCCATTGGTCTGGTCTTTGGCCTAATGAATATGTCTCTATATGC
CGCTGAACAGGAACTGTGCTACCAAGAGATCCAGGAGCACATTCTGGACG
ACCTGAGCAACCTGAACCTAAGTCAACTAAGTAAACTAAATTATCTGGGC
TACTTTATAAAGGAAACCATGCGCCTGTATCCTTCGATTCCCATCATGGG
TCGTCAGACACTCCAGGAAACGGAACTAGAGAATGGCCTAATCCTGCCGA
AGCGCTCTCAGATTAATATACACGTCTTTGACATCCATCGCAATCCCAAG
TATTGGGAATCGCCCGAAGAATTCCGCCCAGAGCGATTCCTACCTCAGAA
CTGCCTGAAAAGGCATCCTTACGCCTACATTCCCTTCAGTGCTGGACAAA
GGAACTGCATAGGCCAGAAGTACGCCATGCAGGAGATGAAGACCCTGATG
GTGGTCATCCTCAAGCATTTCAAGATTCTGCCTGTTATCGATCCCAAGTC
CATTGTCTTCCAAGTGGGCATAACCTTGCGCTTCAAAAATAAAATAAAAG
TCAAGCTTGTGAGGCGGAATTGCGTTGCAAGCTTTCTAGACCAT

BO08073.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4p2-RA 1563 CG1944-PA 1..1560 17..1576 7800 100 Plus
Cyp4p3-RA 1548 CG10843-PA 319..1488 341..1513 925 72.1 Plus
Cyp4p1-RA 1542 CG10842-PA 858..1535 889..1566 900 75.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4p2-RA 1777 CG1944-RA 39..1600 15..1576 7810 100 Plus
Cyp4p3-RA 1667 CG10843-RA 359..1528 341..1513 925 72.1 Plus
Cyp4p1-RA 1680 CG10842-RA 899..1576 889..1566 900 75.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9239098..9239419 1092..1413 1595 99.7 Plus
2R 25286936 2R 9238489..9238760 605..876 1360 100 Plus
2R 25286936 2R 9238819..9239039 877..1097 1105 100 Plus
2R 25286936 2R 9237550..9237756 15..221 1035 100 Plus
2R 25286936 2R 9237836..9238037 221..422 1010 100 Plus
2R 25286936 2R 9239489..9239654 1411..1576 830 100 Plus
2R 25286936 2R 9238331..9238431 505..605 505 100 Plus
2R 25286936 2R 9238089..9238173 420..504 425 100 Plus
2R 25286936 2R 9241539..9241808 1132..1401 420 77 Plus
2R 25286936 2R 9243842..9244112 1143..1413 395 76.4 Plus
2R 25286936 2R 9243538..9243725 896..1083 385 80.3 Plus
2R 25286936 2R 9241242..9241398 889..1045 350 81.5 Plus
2R 25286936 2R 9241887..9242035 1418..1566 220 76.5 Plus
2R 25286936 2R 9240609..9240684 428..503 185 82.9 Plus
Blast to na_te.dros performed on 2014-11-27 23:44:46 has no hits.

BO08073.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:23 Download gff for BO08073.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4p2-RA 1..1563 17..1577 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:57 Download gff for BO08073.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4p2-RA 12..1582 3..1576 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:55 Download gff for BO08073.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4p2-RA 41..1600 17..1578 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:24 Download gff for BO08073.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4p2-RA 12..1582 3..1576 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:21 Download gff for BO08073.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4p2-RA 41..1600 17..1578 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:21 Download gff for BO08073.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9237552..9237756 17..221 100 -> Plus
2R 9237837..9238037 222..422 100 -> Plus
2R 9238092..9238173 423..504 100 -> Plus
2R 9238331..9238431 505..605 100 -> Plus
2R 9238490..9238760 606..876 100 -> Plus
2R 9238819..9239039 877..1097 100 -> Plus
2R 9239104..9239418 1098..1412 100 -> Plus
2R 9239491..9239654 1413..1578 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:55 Download gff for BO08073.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5125057..5125261 17..221 100 -> Plus
arm_2R 5125342..5125542 222..422 100 -> Plus
arm_2R 5125597..5125678 423..504 100 -> Plus
arm_2R 5125836..5125936 505..605 100 -> Plus
arm_2R 5125995..5126265 606..876 100 -> Plus
arm_2R 5126324..5126544 877..1097 100 -> Plus
arm_2R 5126609..5126923 1098..1412 100 -> Plus
arm_2R 5126996..5127159 1413..1578 98   Plus

BO08073.pep Sequence

Translation from 16 to 1594

> BO08073.pep
MMICLLWISVAILVVIHWIYKVNKDYNILAFFARRVQTKDGKPLDSLVPM
IKGRTVFANCFDLLGKDTDQVFTHLRQLAKNSGDSYLQYSMGFSNFNVID
AHNAANILNHPNLITKGVIYNFLHPFLRTGVLTATEKKWHTRRSMLTRTF
HLDILNQFQEIFIAESLKFVSQFQGQNEVVVSLKDRISRFTLNSICETAM
GIKLDEMAEKGDRYRANFHIIDEGLTRRIVNPLYWDDCVYNMFTGHKYNA
ALKVVHEFSREIIAKRRVLLEEELENRRATQTADDDICVIRKKRFAMLDT
LICAEKDGLIDDIGISEEVDTLMAEGYDTTSIGLVFGLMNMSLYAAEQEL
CYQEIQEHILDDLSNLNLSQLSKLNYLGYFIKETMRLYPSIPIMGRQTLQ
ETELENGLILPKRSQINIHVFDIHRNPKYWESPEEFRPERFLPQNCLKRH
PYAYIPFSAGQRNCIGQKYAMQEMKTLMVVILKHFKILPVIDPKSIVFQV
GITLRFKNKIKVKLVRRNCVASFLDH

BO08073.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4p2-PA 520 CG1944-PA 1..520 1..520 2710 100 Plus
Cyp4p3-PA 515 CG10843-PA 3..514 5..517 1811 67.4 Plus
Cyp4p1-PA 513 CG10842-PA 3..512 5..517 1802 66.3 Plus
Cyp4ac1-PA 509 CG14032-PA 1..507 1..517 1070 42.2 Plus
Cyp4ac2-PB 511 CG17970-PB 1..508 1..517 1017 40.8 Plus