Clone Sequence Records
BO08075.3prime Sequence
938 bp (752 high quality bases) assembled on 2006-01-06
> BO08075.3prime
ATGGTCTAGAAAGCTTGCGTCGTACTTGAGGTTGCCCATGCAAATGTACT
TGATGTCCACATAGTCGTCGATACCGTGTTTGGAACCCTCCCGTCCGACA
CCGGACTCCTTGACGCCACCAAACGGAGCCTCTGCTGCGGAGATGATGCC
TTCGTTGACGCCGACCATGCCAACCTCCAGTCGCTTGGCCACCCGGAACA
CCTGCTGCAGATTCTCGCTGTAGAAGTAACCGGCCAGGCCTCTCCTGGTG
TCGTTTGCCTTCTTTACCGCTTCTTCTTCGTCTCGGAACCGTATGATGGA
GACCACTGGACCAAAGACCTCCTCCGAGTAGAGTTGCGCCGAGGGTGGCA
CATCTGTGACAATTGTGGGTGCGTAGAAAAGGGATCCCTTGTCGGGCAAC
GGCTGTCCGCCCAGAATAATGTTCGCCTTCTTCGACCTGGCGTCCTCCAC
AAAGCCACTGACTTTGTTGAACTGCATCTCGTTGATCAGTGGTCCGATTT
GCACATCGCAACCCTGACCATCTCCGATCTTCAAAGCTTCCACGCGTTTT
TTCAGCTGCCCAACAAACTTATCGTAGACGCTGTCCTGGACAAAGAATCT
ATTGGCGGAGACGCAGGTCTGTCCGCAATTCCTAAACTTCGAGGCCATGG
CGCCATCCACTGCTTTTTCAATGTCCGCCGAATCGAAGACAATGAACGGA
GCATTGCCGCCGAGCTCGAGACAAATCCTTTTGATGCCATCAGCAGAGTT
CCGGAACAGCAGTTTGCCCACCTCAGTGGAGCCCGTGAAGGATATACCCC
TAACATCGGGACTCTTGCAGAAGAGATCGCCAATGGGAGCCGCTTTGTTT
GTGGTGACACATTTATCACACCCTTTGGATGCCAGCGTCACTGCCAATTT
NCCACAGCCAGGGCAGTAAGAAGAGTGTCTTCTGAAGG
BO08075.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4685-PA | 1530 | CG4685-RA | 688..1527 | 858..19 | 4200 | 100 | Minus |
| CG4685-PB | 1530 | CG4685-RB | 688..1527 | 858..19 | 4200 | 100 | Minus |
| CG4685-PC | 1530 | CG4685-RC | 688..1527 | 858..19 | 4200 | 100 | Minus |
| CG4685-PD | 1530 | CG4685-RD | 688..1527 | 858..19 | 4200 | 100 | Minus |
| CG4685-PA | 1530 | CG4685-RA | 604..640 | 938..902 | 160 | 97.2 | Minus |
| CG4685-PB | 1530 | CG4685-RB | 604..640 | 938..902 | 160 | 97.2 | Minus |
| CG4685-PC | 1530 | CG4685-RC | 604..640 | 938..902 | 160 | 97.2 | Minus |
| CG4685-PD | 1530 | CG4685-RD | 604..640 | 938..902 | 160 | 97.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:30:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ssadh-RE | 1847 | CG4685-RE | 794..1717 | 938..19 | 4494 | 99.4 | Minus |
| Ssadh-RD | 1865 | CG4685-RD | 812..1735 | 938..19 | 4494 | 99.4 | Minus |
| Ssadh-RC | 1858 | CG4685-RC | 805..1728 | 938..19 | 4494 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:30:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25624935..25625858 | 19..938 | 4394 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:30:42 has no hits.
BO08075.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:13 Download gff for
BO08075.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4685-PB | 604..1530 | 16..938 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:10 Download gff for
BO08075.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4685-PC | 604..1530 | 16..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:10:46 Download gff for
BO08075.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssadh-RC | 805..1733 | 14..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:50 Download gff for
BO08075.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssadh-RC | 805..1733 | 14..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:50 Download gff for
BO08075.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25624930..25625858 | 14..938 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:10:46 Download gff for
BO08075.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21450652..21451580 | 14..938 | 99 | | Plus |
BO08075.5prime Sequence
905 bp (850 high quality bases) assembled on 2006-01-06
> BO08075.5prime
GAAGTTATCAGTCGACATGTGGCGACAGCTCAGCGGAGTCGCACGAACAG
GAAGCAGCCTAAGCCTCTGCAGAATGCGAGGATTCTCGGCACTGGTGCAG
GATAAGGCCCTGGTGGATGGCGCCTGGGTGGATTCCAGCAATGCAAAGGC
GACCTTCGAGGTGCGGAATCCTGCCAATGGTGCTGTCATCGGCAAAGTGC
CCAACATGACGGTGGCGGATGCCCAGAAGGCCATAGACGCCGCTAAGCAG
GCGTACGAGTCCAAGGAGTGGCGATCCCTGACCGCCAAGGATCGGTCCAA
CCTGCTCAAGAAGTGGCACAAACTGATCGAGCAGCACTCGCAGGAGATAG
CCGAGATAATGACGGCCGAGTCGGGCAAGCCGATCAACGAGTCGAAGGGG
GAGGTGGCCTACGGAAACGCCTTCGTCGAGTGGTTTGCAGAGGAGGCCCG
TCGCATCTACGGCGAAATTGTGCCCAGTGCATCGCCCAATCGCGAAATCA
TAGTAATGAAGCAGCCCATTGGGGTGGCGGCGCTGATTACGCCCTGGAAC
TTCCCGATGGCTATGATTACGAGGAAAGCAGGAGCCGCCCTGGCCGCAGG
ATGTACGGTCGTGGTGAAACCTTCAGAAGACACTCCTCTTACTGCCCTGG
CTGTGGCCAAATTGGCAGTGGACGCTGGCATTCCAAAGGGTGTGATAAAT
GTGGTCACCACAAACAAAGCGGCTCCCATTGGCGATCTCTTCTGCAAGAG
TCCCGATGTTAGGGGTATATCCTTCACGGGCTCCACTGAGGTGGGCAAAC
TGCTGTTCCGGAACTCTGCTGATGGCATCAAAAGGATTTGTCTCGAGCTC
GGCGGNCATGCTCCGTTCATTGTCTTCGATTCGGCGGACATTGAAAAAGC
AGTGG
BO08075.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4685-PA | 1530 | CG4685-RA | 1..889 | 17..905 | 4401 | 99.7 | Plus |
| CG4685-PB | 1530 | CG4685-RB | 1..889 | 17..905 | 4401 | 99.7 | Plus |
| CG4685-PC | 1530 | CG4685-RC | 1..889 | 17..905 | 4401 | 99.7 | Plus |
| CG4685-PD | 1530 | CG4685-RD | 1..889 | 17..905 | 4401 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:40:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ssadh-RE | 1847 | CG4685-RE | 191..1079 | 17..905 | 4419 | 99.8 | Plus |
| Ssadh-RD | 1865 | CG4685-RD | 209..1097 | 17..905 | 4419 | 99.8 | Plus |
| Ssadh-RC | 1858 | CG4685-RC | 202..1090 | 17..905 | 4419 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:40:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25625573..25626169 | 905..309 | 2959 | 99.7 | Minus |
| 3R | 32079331 | 3R | 25626344..25626637 | 310..17 | 1470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:40:27 has no hits.
BO08075.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:14 Download gff for
BO08075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4685-PD | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:12 Download gff for
BO08075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4685-PD | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:06:16 Download gff for
BO08075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssadh-RC | 200..1090 | 14..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:39 Download gff for
BO08075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssadh-RC | 200..1090 | 14..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:39 Download gff for
BO08075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25625573..25626167 | 311..905 | 99 | <- | Minus |
| 3R | 25626344..25626639 | 14..310 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:06:16 Download gff for
BO08075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21451295..21451889 | 311..905 | 99 | <- | Minus |
| arm_3R | 21452066..21452361 | 14..310 | 99 | | Minus |
BO08075.complete Sequence
1561 bp assembled on 2006-12-18
GenBank Submission: FJ631041
> BO08075.complete
GAAGTTATCAGTCGACATGTGGCGACAGCTCAGCGGAGTCGCACGAACAG
GAAGCAGCCTAAGCCTCTGCAGAATGCGAGGATTCTCGGCACTGGTGCAG
GATAAGGCCCTGGTGGATGGCGCCTGGGTGGATTCCAGCAATGCAAAGGC
GACCTTCGAGGTGCGGAATCCTGCCAATGGTGCTGTCATCGGCAAAGTGC
CCAACATGACGGTGGCGGATGCCCAGAAGGCCATAGACGCCGCTAAGCAG
GCGTACGAGTCCAAGGAGTGGCGATCCCTGACCGCCAAGGATCGGTCCAA
CCTGCTCAAGAAGTGGCACAAACTGATCGAGCAGCACTCGCAGGAGATAG
CCGAGATAATGACGGCCGAGTCGGGCAAGCCGATCAACGAGTCGAAGGGG
GAGGTGGCCTACGGAAACGCCTTCGTCGAGTGGTTTGCAGAGGAGGCCCG
TCGCATCTACGGCGAAATTGTGCCCAGTGCATCGCCCAATCGCGAAATCA
TAGTAATGAAGCAGCCCATTGGGGTGGCGGCGCTGATTACGCCCTGGAAC
TTCCCGATGGCTATGATTACGAGGAAAGCAGGAGCCGCCCTGGCCGCAGG
ATGTACGGTCGTGGTGAAACCTTCAGAAGACACTCCTCTTACTGCCCTGG
CTGTGGCCAAATTGGCAGTGGACGCTGGCATTCCAAAGGGTGTGATAAAT
GTGGTCACCACAAACAAAGCGGCTCCCATTGGCGATCTCTTCTGCAAGAG
TCCCGATGTTAGGGGTATATCCTTCACGGGCTCCACTGAGGTGGGCAAAC
TGCTGTTCCGGAACTCTGCTGATGGCATCAAAAGGATTTGTCTCGAGCTC
GGCGGCAATGCTCCGTTCATTGTCTTCGATTCGGCGGACATTGAAAAAGC
AGTGGATGGCGCCATGGCCTCGAAGTTTAGGAATTGCGGACAGACCTGCG
TCTCCGCCAATAGATTCTTTGTCCAGGACAGCGTCTACGATAAGTTTGTT
GGGCAGCTGAAAAAACGCGTGGAAGCTTTGAAGATCGGAGATGGTCAGGG
TTGCGATGTGCAAATCGGACCACTGATCAACGAGATGCAGTTCAACAAAG
TCAGTGGCTTTGTGGAGGACGCCAGGTCGAAGAAGGCGAACATTATTCTG
GGCGGACAGCCGTTGCCCGACAAGGGATCCCTTTTCTACGCACCCACAAT
TGTCACAGATGTGCCACCCTCGGCGCAACTCTACTCGGAGGAGGTCTTTG
GTCCAGTGGTCTCCATCATACGGTTCCGAGACGAAGAAGAAGCGGTAAAG
AAGGCAAACGACACCAGGAGAGGCCTGGCCGGTTACTTCTACAGCGAGAA
TCTGCAGCAGGTGTTCCGGGTGGCCAAGCGACTGGAGGTTGGCATGGTCG
GCGTCAACGAAGGCATCATCTCCGCAGCAGAGGCTCCGTTTGGTGGCGTC
AAGGAGTCCGGTGTCGGACGGGAGGGTTCCAAACACGGTATCGACGACTA
TGTGGACATCAAGTACATTTGCATGGGCAACCTCAAGTACGACGCAAGCT
TTCTAGACCAT
BO08075.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:22:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ssadh-RE | 1530 | CG4685-PE | 1..1527 | 17..1543 | 7635 | 100 | Plus |
| Ssadh-RD | 1530 | CG4685-PD | 1..1527 | 17..1543 | 7635 | 100 | Plus |
| Ssadh-RC | 1530 | CG4685-PC | 1..1527 | 17..1543 | 7635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:22:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ssadh-RE | 1847 | CG4685-RE | 191..1717 | 17..1543 | 7635 | 100 | Plus |
| Ssadh-RD | 1865 | CG4685-RD | 209..1735 | 17..1543 | 7635 | 100 | Plus |
| Ssadh-RC | 1858 | CG4685-RC | 202..1728 | 17..1543 | 7635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:22:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25624935..25626169 | 1543..309 | 6175 | 100 | Minus |
| 3R | 32079331 | 3R | 25626344..25626637 | 310..17 | 1470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:22:56 has no hits.
BO08075.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:21 Download gff for
BO08075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4685-RC | 1..1530 | 17..1546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:28:45 Download gff for
BO08075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4685-RC | 174..1700 | 17..1545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:31 Download gff for
BO08075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssadh-RC | 202..1728 | 17..1545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:21 Download gff for
BO08075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4685-RC | 172..1705 | 14..1548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:43 Download gff for
BO08075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssadh-RC | 202..1728 | 17..1545 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:43 Download gff for
BO08075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25624932..25626167 | 311..1545 | 99 | <- | Minus |
| 3R | 25626344..25626637 | 17..310 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:31 Download gff for
BO08075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21450654..21451889 | 311..1545 | 99 | <- | Minus |
| arm_3R | 21452066..21452359 | 17..310 | 100 | | Minus |
BO08075.pep Sequence
Translation from 16 to 1561
> BO08075.pep
MWRQLSGVARTGSSLSLCRMRGFSALVQDKALVDGAWVDSSNAKATFEVR
NPANGAVIGKVPNMTVADAQKAIDAAKQAYESKEWRSLTAKDRSNLLKKW
HKLIEQHSQEIAEIMTAESGKPINESKGEVAYGNAFVEWFAEEARRIYGE
IVPSASPNREIIVMKQPIGVAALITPWNFPMAMITRKAGAALAAGCTVVV
KPSEDTPLTALAVAKLAVDAGIPKGVINVVTTNKAAPIGDLFCKSPDVRG
ISFTGSTEVGKLLFRNSADGIKRICLELGGNAPFIVFDSADIEKAVDGAM
ASKFRNCGQTCVSANRFFVQDSVYDKFVGQLKKRVEALKIGDGQGCDVQI
GPLINEMQFNKVSGFVEDARSKKANIILGGQPLPDKGSLFYAPTIVTDVP
PSAQLYSEEVFGPVVSIIRFRDEEEAVKKANDTRRGLAGYFYSENLQQVF
RVAKRLEVGMVGVNEGIISAAEAPFGGVKESGVGREGSKHGIDDYVDIKY
ICMGNLKYDASFLDH
BO08075.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ssadh-PE | 509 | CG4685-PE | 1..509 | 1..509 | 2604 | 100 | Plus |
| Ssadh-PD | 509 | CG4685-PD | 1..509 | 1..509 | 2604 | 100 | Plus |
| Ssadh-PC | 509 | CG4685-PC | 1..509 | 1..509 | 2604 | 100 | Plus |
| Ssadh-PB | 509 | CG4685-PB | 1..509 | 1..509 | 2604 | 100 | Plus |
| Ssadh-PA | 509 | CG4685-PA | 1..509 | 1..509 | 2604 | 100 | Plus |
