Clone Sequence Records
BO08076.3prime Sequence
992 bp (830 high quality bases) assembled on 2006-01-06
> BO08076.3prime
ATGGTCTAGAAAGCTTGCGTCATATTCGTGTATCCAGGCTGTCATTACCC
ATTTGGAACCATGAAAGACGGGACAAGCGGCGTGCATAGTGGTGGGCTCC
ATGTCGTGGGTGTCGCCATTAAGATTGTACCAGAACAGAACTTTTCCCCG
TTCGGCAGGTACTTTAACATTTAAACGCGGGAAGACAGTGGCACCTCCGT
AAGGAGCATCATTTAGATAAAACATAAAGGTGGCCATCCGATCACCAAAT
CCTTTAGATTCCGAGTTTCTCTTTTTGAAGAAGTCATAGTAATTAGTGTA
GGGAGCTCCAAAGCCGTATTTGATAATATTAATGGGATTTCCCTGGCGGA
TTTGTAGGCCAGTGATATCCCGCATCCTCTGAGTCAAGCTATCCAAAAGT
GGTCCACCGAGCGGTGTGCGGTAACTGCTCCTTGCCTCATTCTTATTATC
GTCAAACATTTCTGTGGGTTTCAGTAGTGGCTCCGCCAAGGTTATTAGCT
GCTGGATATCCTTATCCGGCAGGATGTCATGGTACACCACTATATGGGGC
TCCAGAGAGATCTCCTCCATTTTGAGGGGAGCCAGGATCAGGAAGGCGGA
GGTGGTGCTGTTGTAGCGACAGTGGAGTTTTGAAGGGTTCGGAGAGAACG
AGGAACGGCACAGTCTCTTGTAGCCTTCACCCAACTTGGGCGAACTGTCT
ATTGCCTCGTAAGGATTGGCCTTGAATTGGTCCAGCAAGCTAATCGAATT
GTCTGCGAGATCAGGTTGATCCAGAAGTACCTCATGGGCTTCATCTCTCC
GGTCCAATTCCACTAAACAGCGAGCCTGCAGCAGGGCCACATCCTGGCGA
TTCATTCCCAGCACCTCATAAACCCCGGAGTACTCCTCTTTCATCCGAGC
TTTGCTGATGGTTATCCACTGTAATGCCTGCTTGAAGTAGCCCCACTTGA
AGTACATCTTTGCGACTTCAAACAAATCAGAGCTGCCAGTGT
BO08076.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31017-PA | 1446 | PH4alphaNE3-RA | 490..1443 | 972..19 | 4770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:02:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaNE3-RA | 1627 | CG31017-RA | 476..1450 | 992..19 | 4805 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:02:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30605076..30605663 | 804..217 | 2940 | 100 | Minus |
3R | 32079331 | 3R | 30605704..30605884 | 228..48 | 875 | 98.9 | Minus |
3R | 32079331 | 3R | 30604831..30605020 | 992..804 | 855 | 97.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:02:31 has no hits.
BO08076.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:15 Download gff for
BO08076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31017-PA | 469..1446 | 18..992 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:14 Download gff for
BO08076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31017-PA | 469..1446 | 18..992 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:12 Download gff for
BO08076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 476..1457 | 10..992 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:25:42 Download gff for
BO08076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 476..1457 | 10..992 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:25:42 Download gff for
BO08076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30604831..30605020 | 804..992 | 97 | -> | Minus |
3R | 30605077..30605663 | 217..803 | 100 | -> | Minus |
3R | 30605716..30605884 | 48..216 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:12 Download gff for
BO08076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26430553..26430742 | 804..992 | 97 | -> | Minus |
arm_3R | 26430799..26431385 | 217..803 | 100 | -> | Minus |
arm_3R | 26431438..26431606 | 48..216 | 100 | -> | Minus |
BO08076.5prime Sequence
889 bp (840 high quality bases) assembled on 2006-01-06
> BO08076.5prime
GAAGTTATCAGTCGAACATGTTTTGCAAAGTTGAAAGCACATTGAATTGG
GAGAGCCGTCAGGAATTTCTAGATACGGAATCAGCGAAAATGGACTTAAT
GCAATTGGACGTCGAATTAATTGATAATCTAATGAATTACGCCGAAAAAA
TAGATGAGAAGGCTTCCCAACTAAAGAGACTAGCCCAGGAACTAAGACAG
CCTTTGCACTCTGCGAAAGGTAGAGAAGAGGAGTACTTGGGCAATCCTCT
CCACAGTTTTCCACTCATTCGACACATGTACCAGGATTGGCGGTACCTGG
AAGAGTTTATGAAGAAACCAGTGGGAGAAGAGGAAATCCAATTTCTAAGA
AGAAAGTTACCGGAACTGCCCTGGCAGGTGGACACCGAGGAAGCCAGCGT
CTCAATCTTCAGAATAGCTGAAACCTATGGAATGATGCCCTGGGATATGG
CCAACGGTCTCATCGACAATGTTCGGTTCAACTCCACACTGCCAGCTCTG
GATTGTTTTGAAGTCGCAAAGATGTACTTCAAGTGGGGCTACTTCAAGCA
GGCATTACAGTGGATAACCATCAGCAAAGCTCGGATGAAAGAGGAGTACT
CCGGGGTTTATGAGGTGCTGGGAATGAATCGCCAGGATGTGGCCCTGCTG
CAGGCTCGCTGTTTAGTGGAATTGGACCGGAGAGATGAAGCCCATGAGGT
ACTTCTGGATCAACCTGATCTCGCAGACAATTCGATTAGCTTGCTGGACC
AATTCAAGGCCAATCCTTACGAGGCAATAGACAGTTCGCCCAAGTTGGGT
GAAGGCTACAAGAGACTGTGCCGTTCCTCGTTCTCTCCGAACCTTTCAAA
CTCCACTGTCGCTACAACAGCACCACCTCCGCCTTCCTG
BO08076.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31017-PA | 1446 | PH4alphaNE3-RA | 1..833 | 18..850 | 4140 | 99.8 | Plus |
CG31017-PA | 1446 | PH4alphaNE3-RA | 832..873 | 848..889 | 210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaNE3-RA | 1627 | CG31017-RA | 8..880 | 18..889 | 4325 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:57:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30605076..30605291 | 675..889 | 1015 | 99.1 | Plus |
3R | 32079331 | 3R | 30604827..30605020 | 482..675 | 970 | 100 | Plus |
3R | 32079331 | 3R | 30604188..30604348 | 18..178 | 805 | 100 | Plus |
3R | 32079331 | 3R | 30604405..30604558 | 177..330 | 770 | 100 | Plus |
3R | 32079331 | 3R | 30604615..30604767 | 329..481 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:57:09 has no hits.
BO08076.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:16 Download gff for
BO08076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31017-PA | 1..873 | 18..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:15 Download gff for
BO08076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31017-PA | 1..873 | 18..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:45:52 Download gff for
BO08076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 8..880 | 18..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:29:14 Download gff for
BO08076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 8..880 | 18..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:29:14 Download gff for
BO08076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30604188..30604348 | 18..178 | 100 | -> | Plus |
3R | 30604407..30604558 | 179..330 | 100 | -> | Plus |
3R | 30604617..30604767 | 331..481 | 100 | -> | Plus |
3R | 30604827..30605020 | 482..675 | 100 | -> | Plus |
3R | 30605077..30605291 | 676..889 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:45:52 Download gff for
BO08076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26429910..26430070 | 18..178 | 100 | -> | Plus |
arm_3R | 26430129..26430280 | 179..330 | 100 | -> | Plus |
arm_3R | 26430339..26430489 | 331..481 | 100 | -> | Plus |
arm_3R | 26430549..26430742 | 482..675 | 100 | -> | Plus |
arm_3R | 26430799..26431013 | 676..889 | 99 | | Plus |
BO08076.complete Sequence
1478 bp assembled on 2011-06-28
GenBank Submission: KX795807
> BO08076.complete
GAAGTTATCAGTCGAACATGTTTTGCAAAGTTGAAAGCACATTGAATTGG
GAGAGCCGTCAGGAATTTCTAGATACGGAATCAGCGAAAATGGACTTAAT
GCAATTGGACGTCGAATTAATTGATAATCTAATGAATTACGCCGAAAAAA
TAGATGAGAAGGCTTCCCAACTAAAGAGACTAGCCCAGGAACTAAGACAG
CCTTTGCACTCTGCGAAAGGTAGAGAAGAGGAGTACTTGGGCAATCCTCT
CCACAGTTTTCCACTCATTCGACACATGTACCAGGATTGGCGGTACCTGG
AAGAGTTTATGAAGAAACCAGTGGGAGAAGAGGAAATCCAATTTCTAAGA
AGAAAGTTACCGGAACTGCCCTGGCAGGTGGACACCGAGGAAGCCAGCGT
CTCAATCTTCAGAATAGCTGAAACCTATGGAATGATGCCCTGGGATATGG
CCAACGGTCTCATCGACAATGTTCGGTTCAACTCCACACTGCCAGCTCTG
GATTGTTTTGAAGTCGCAAAGATGTACTTCAAGTGGGGCTACTTCAAGCA
GGCATTACAGTGGATAACCATCAGCAAAGCTCGGATGAAAGAGGAGTACT
CCGGGGTTTATGAGGTGCTGGGAATGAATCGCCAGGATGTGGCCCTGCTG
CAGGCTCGCTGTTTAGTGGAATTGGACCGGAGAGATGAAGCCCATGAGGT
ACTTCTGGATCAACCTGATCTCGCAGACAATTCGATTAGCTTGCTGGACC
AATTCAAGGCCAATCCTTACGAGGCAATAGACAGTTCGCCCAAGTTGGGT
GAAGGCTACAAGAGACTGTGCCGTTCCTCGTTCTCTCCGAACCCTTCAAA
ACTCCACTGTCGCTACAACAGCACCACCTCCGCCTTCCTGATCCTGGCTC
CCCTCAAAATGGAGGAGATCTCTCTGGAGCCCCATATAGTGGTGTACCAT
GACATCCTGCCGGATAAGGATATCCAGCAGCTAATAACCTTGGCGGAGCC
ACTACTGAAACCCACAGAAATGTTTGACGATAATAAGAATGAGGCAAGGA
GCAGTTACCGCACACCGCTCGGTGGACCACTTTTGGATAGCTTGACTCAG
AGGATGCGGGATATCACTGGCCTACAAATCCGCCAGGGAAATCCCATTAA
TATTATCAAATACGGCTTTGGAGCTCCCTACACTAATTACTATGACTTCT
TCAAAAAGAGAAACTCGGAATCTAAAGGATTTGGTGATCGGATGGCCACC
TTTATGTTTTATCTAAATGATGCTCCTTACGGAGGTGCCACTGTCTTCCC
GCGTTTAAATGTTAAAGTACCTGCCGAACGGGGAAAAGTTCTGTTCTGGT
ACAATCTTAATGGCGACACCCACGACATGGAGCCCACCACTATGCACGCC
GCTTGTCCCGTCTTTCATGGTTCCAAATGGGTAATGACAGCCTGGATACA
CGAATATGACGCAAGCTTTCTAGACCAT
BO08076.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:17:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaNE3-RA | 1446 | CG31017-PA | 1..1443 | 18..1460 | 7215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaNE3-RA | 1627 | CG31017-RA | 8..1450 | 18..1460 | 7215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30605076..30605663 | 675..1262 | 2940 | 100 | Plus |
3R | 32079331 | 3R | 30604827..30605020 | 482..675 | 970 | 100 | Plus |
3R | 32079331 | 3R | 30605704..30605884 | 1251..1431 | 875 | 98.9 | Plus |
3R | 32079331 | 3R | 30604188..30604348 | 18..178 | 805 | 100 | Plus |
3R | 32079331 | 3R | 30604405..30604558 | 177..330 | 770 | 100 | Plus |
3R | 32079331 | 3R | 30604615..30604767 | 329..481 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:17:05 has no hits.
BO08076.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:28 Download gff for
BO08076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 7..1450 | 17..1462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:52 Download gff for
BO08076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 7..1450 | 17..1462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:30 Download gff for
BO08076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 7..1450 | 17..1462 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:30 Download gff for
BO08076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30604187..30604348 | 17..178 | 99 | -> | Plus |
3R | 30604407..30604558 | 179..330 | 100 | -> | Plus |
3R | 30604617..30604767 | 331..481 | 100 | -> | Plus |
3R | 30604827..30605020 | 482..675 | 100 | -> | Plus |
3R | 30605077..30605663 | 676..1262 | 100 | -> | Plus |
3R | 30605716..30605884 | 1263..1431 | 100 | -> | Plus |
3R | 30605939..30605967 | 1432..1462 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:52 Download gff for
BO08076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26429909..26430070 | 17..178 | 99 | -> | Plus |
arm_3R | 26430129..26430280 | 179..330 | 100 | -> | Plus |
arm_3R | 26430339..26430489 | 331..481 | 100 | -> | Plus |
arm_3R | 26430549..26430742 | 482..675 | 100 | -> | Plus |
arm_3R | 26430799..26431385 | 676..1262 | 100 | -> | Plus |
arm_3R | 26431438..26431606 | 1263..1431 | 100 | -> | Plus |
arm_3R | 26431661..26431689 | 1432..1462 | 93 | | Plus |
BO08076.pep Sequence
Translation from 17 to 1478
> BO08076.pep
MFCKVESTLNWESRQEFLDTESAKMDLMQLDVELIDNLMNYAEKIDEKAS
QLKRLAQELRQPLHSAKGREEEYLGNPLHSFPLIRHMYQDWRYLEEFMKK
PVGEEEIQFLRRKLPELPWQVDTEEASVSIFRIAETYGMMPWDMANGLID
NVRFNSTLPALDCFEVAKMYFKWGYFKQALQWITISKARMKEEYSGVYEV
LGMNRQDVALLQARCLVELDRRDEAHEVLLDQPDLADNSISLLDQFKANP
YEAIDSSPKLGEGYKRLCRSSFSPNPSKLHCRYNSTTSAFLILAPLKMEE
ISLEPHIVVYHDILPDKDIQQLITLAEPLLKPTEMFDDNKNEARSSYRTP
LGGPLLDSLTQRMRDITGLQIRQGNPINIIKYGFGAPYTNYYDFFKKRNS
ESKGFGDRMATFMFYLNDAPYGGATVFPRLNVKVPAERGKVLFWYNLNGD
THDMEPTTMHAACPVFHGSKWVMTAWIHEYDASFLDH
BO08076.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaNE3-PA | 481 | CG31017-PA | 1..481 | 1..481 | 2560 | 100 | Plus |
CG31016-PC | 536 | CG31016-PC | 22..516 | 11..485 | 914 | 37.6 | Plus |
CG31016-PB | 536 | CG31016-PB | 22..516 | 11..485 | 914 | 37.6 | Plus |
PH4alphaPV-PA | 525 | CG31015-PA | 42..516 | 27..484 | 717 | 34.9 | Plus |
CG18233-PB | 515 | CG18233-PB | 27..498 | 13..478 | 621 | 30.6 | Plus |