Clone BO08076 Report

Search the DGRC for BO08076

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:80
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptPH4alphaNE3-RA
Protein status:BO08076.pep: Imported from assembly
Sequenced Size:1478

Clone Sequence Records

BO08076.3prime Sequence

992 bp (830 high quality bases) assembled on 2006-01-06

> BO08076.3prime
ATGGTCTAGAAAGCTTGCGTCATATTCGTGTATCCAGGCTGTCATTACCC
ATTTGGAACCATGAAAGACGGGACAAGCGGCGTGCATAGTGGTGGGCTCC
ATGTCGTGGGTGTCGCCATTAAGATTGTACCAGAACAGAACTTTTCCCCG
TTCGGCAGGTACTTTAACATTTAAACGCGGGAAGACAGTGGCACCTCCGT
AAGGAGCATCATTTAGATAAAACATAAAGGTGGCCATCCGATCACCAAAT
CCTTTAGATTCCGAGTTTCTCTTTTTGAAGAAGTCATAGTAATTAGTGTA
GGGAGCTCCAAAGCCGTATTTGATAATATTAATGGGATTTCCCTGGCGGA
TTTGTAGGCCAGTGATATCCCGCATCCTCTGAGTCAAGCTATCCAAAAGT
GGTCCACCGAGCGGTGTGCGGTAACTGCTCCTTGCCTCATTCTTATTATC
GTCAAACATTTCTGTGGGTTTCAGTAGTGGCTCCGCCAAGGTTATTAGCT
GCTGGATATCCTTATCCGGCAGGATGTCATGGTACACCACTATATGGGGC
TCCAGAGAGATCTCCTCCATTTTGAGGGGAGCCAGGATCAGGAAGGCGGA
GGTGGTGCTGTTGTAGCGACAGTGGAGTTTTGAAGGGTTCGGAGAGAACG
AGGAACGGCACAGTCTCTTGTAGCCTTCACCCAACTTGGGCGAACTGTCT
ATTGCCTCGTAAGGATTGGCCTTGAATTGGTCCAGCAAGCTAATCGAATT
GTCTGCGAGATCAGGTTGATCCAGAAGTACCTCATGGGCTTCATCTCTCC
GGTCCAATTCCACTAAACAGCGAGCCTGCAGCAGGGCCACATCCTGGCGA
TTCATTCCCAGCACCTCATAAACCCCGGAGTACTCCTCTTTCATCCGAGC
TTTGCTGATGGTTATCCACTGTAATGCCTGCTTGAAGTAGCCCCACTTGA
AGTACATCTTTGCGACTTCAAACAAATCAGAGCTGCCAGTGT

BO08076.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31017-PA 1446 PH4alphaNE3-RA 490..1443 972..19 4770 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaNE3-RA 1627 CG31017-RA 476..1450 992..19 4805 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30605076..30605663 804..217 2940 100 Minus
3R 32079331 3R 30605704..30605884 228..48 875 98.9 Minus
3R 32079331 3R 30604831..30605020 992..804 855 97.9 Minus
Blast to na_te.dros performed on 2015-02-11 03:02:31 has no hits.

BO08076.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:15 Download gff for BO08076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31017-PA 469..1446 18..992 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:14 Download gff for BO08076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31017-PA 469..1446 18..992 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:12 Download gff for BO08076.3prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 476..1457 10..992 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:25:42 Download gff for BO08076.3prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 476..1457 10..992 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:25:42 Download gff for BO08076.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30604831..30605020 804..992 97 -> Minus
3R 30605077..30605663 217..803 100 -> Minus
3R 30605716..30605884 48..216 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:12 Download gff for BO08076.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26430553..26430742 804..992 97 -> Minus
arm_3R 26430799..26431385 217..803 100 -> Minus
arm_3R 26431438..26431606 48..216 100 -> Minus

BO08076.5prime Sequence

889 bp (840 high quality bases) assembled on 2006-01-06

> BO08076.5prime
GAAGTTATCAGTCGAACATGTTTTGCAAAGTTGAAAGCACATTGAATTGG
GAGAGCCGTCAGGAATTTCTAGATACGGAATCAGCGAAAATGGACTTAAT
GCAATTGGACGTCGAATTAATTGATAATCTAATGAATTACGCCGAAAAAA
TAGATGAGAAGGCTTCCCAACTAAAGAGACTAGCCCAGGAACTAAGACAG
CCTTTGCACTCTGCGAAAGGTAGAGAAGAGGAGTACTTGGGCAATCCTCT
CCACAGTTTTCCACTCATTCGACACATGTACCAGGATTGGCGGTACCTGG
AAGAGTTTATGAAGAAACCAGTGGGAGAAGAGGAAATCCAATTTCTAAGA
AGAAAGTTACCGGAACTGCCCTGGCAGGTGGACACCGAGGAAGCCAGCGT
CTCAATCTTCAGAATAGCTGAAACCTATGGAATGATGCCCTGGGATATGG
CCAACGGTCTCATCGACAATGTTCGGTTCAACTCCACACTGCCAGCTCTG
GATTGTTTTGAAGTCGCAAAGATGTACTTCAAGTGGGGCTACTTCAAGCA
GGCATTACAGTGGATAACCATCAGCAAAGCTCGGATGAAAGAGGAGTACT
CCGGGGTTTATGAGGTGCTGGGAATGAATCGCCAGGATGTGGCCCTGCTG
CAGGCTCGCTGTTTAGTGGAATTGGACCGGAGAGATGAAGCCCATGAGGT
ACTTCTGGATCAACCTGATCTCGCAGACAATTCGATTAGCTTGCTGGACC
AATTCAAGGCCAATCCTTACGAGGCAATAGACAGTTCGCCCAAGTTGGGT
GAAGGCTACAAGAGACTGTGCCGTTCCTCGTTCTCTCCGAACCTTTCAAA
CTCCACTGTCGCTACAACAGCACCACCTCCGCCTTCCTG

BO08076.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31017-PA 1446 PH4alphaNE3-RA 1..833 18..850 4140 99.8 Plus
CG31017-PA 1446 PH4alphaNE3-RA 832..873 848..889 210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaNE3-RA 1627 CG31017-RA 8..880 18..889 4325 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30605076..30605291 675..889 1015 99.1 Plus
3R 32079331 3R 30604827..30605020 482..675 970 100 Plus
3R 32079331 3R 30604188..30604348 18..178 805 100 Plus
3R 32079331 3R 30604405..30604558 177..330 770 100 Plus
3R 32079331 3R 30604615..30604767 329..481 765 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:57:09 has no hits.

BO08076.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:16 Download gff for BO08076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31017-PA 1..873 18..889 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:15 Download gff for BO08076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31017-PA 1..873 18..889 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:45:52 Download gff for BO08076.5prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 8..880 18..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:29:14 Download gff for BO08076.5prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 8..880 18..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:29:14 Download gff for BO08076.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30604188..30604348 18..178 100 -> Plus
3R 30604407..30604558 179..330 100 -> Plus
3R 30604617..30604767 331..481 100 -> Plus
3R 30604827..30605020 482..675 100 -> Plus
3R 30605077..30605291 676..889 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:45:52 Download gff for BO08076.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26429910..26430070 18..178 100 -> Plus
arm_3R 26430129..26430280 179..330 100 -> Plus
arm_3R 26430339..26430489 331..481 100 -> Plus
arm_3R 26430549..26430742 482..675 100 -> Plus
arm_3R 26430799..26431013 676..889 99   Plus

BO08076.complete Sequence

1478 bp assembled on 2011-06-28

GenBank Submission: KX795807

> BO08076.complete
GAAGTTATCAGTCGAACATGTTTTGCAAAGTTGAAAGCACATTGAATTGG
GAGAGCCGTCAGGAATTTCTAGATACGGAATCAGCGAAAATGGACTTAAT
GCAATTGGACGTCGAATTAATTGATAATCTAATGAATTACGCCGAAAAAA
TAGATGAGAAGGCTTCCCAACTAAAGAGACTAGCCCAGGAACTAAGACAG
CCTTTGCACTCTGCGAAAGGTAGAGAAGAGGAGTACTTGGGCAATCCTCT
CCACAGTTTTCCACTCATTCGACACATGTACCAGGATTGGCGGTACCTGG
AAGAGTTTATGAAGAAACCAGTGGGAGAAGAGGAAATCCAATTTCTAAGA
AGAAAGTTACCGGAACTGCCCTGGCAGGTGGACACCGAGGAAGCCAGCGT
CTCAATCTTCAGAATAGCTGAAACCTATGGAATGATGCCCTGGGATATGG
CCAACGGTCTCATCGACAATGTTCGGTTCAACTCCACACTGCCAGCTCTG
GATTGTTTTGAAGTCGCAAAGATGTACTTCAAGTGGGGCTACTTCAAGCA
GGCATTACAGTGGATAACCATCAGCAAAGCTCGGATGAAAGAGGAGTACT
CCGGGGTTTATGAGGTGCTGGGAATGAATCGCCAGGATGTGGCCCTGCTG
CAGGCTCGCTGTTTAGTGGAATTGGACCGGAGAGATGAAGCCCATGAGGT
ACTTCTGGATCAACCTGATCTCGCAGACAATTCGATTAGCTTGCTGGACC
AATTCAAGGCCAATCCTTACGAGGCAATAGACAGTTCGCCCAAGTTGGGT
GAAGGCTACAAGAGACTGTGCCGTTCCTCGTTCTCTCCGAACCCTTCAAA
ACTCCACTGTCGCTACAACAGCACCACCTCCGCCTTCCTGATCCTGGCTC
CCCTCAAAATGGAGGAGATCTCTCTGGAGCCCCATATAGTGGTGTACCAT
GACATCCTGCCGGATAAGGATATCCAGCAGCTAATAACCTTGGCGGAGCC
ACTACTGAAACCCACAGAAATGTTTGACGATAATAAGAATGAGGCAAGGA
GCAGTTACCGCACACCGCTCGGTGGACCACTTTTGGATAGCTTGACTCAG
AGGATGCGGGATATCACTGGCCTACAAATCCGCCAGGGAAATCCCATTAA
TATTATCAAATACGGCTTTGGAGCTCCCTACACTAATTACTATGACTTCT
TCAAAAAGAGAAACTCGGAATCTAAAGGATTTGGTGATCGGATGGCCACC
TTTATGTTTTATCTAAATGATGCTCCTTACGGAGGTGCCACTGTCTTCCC
GCGTTTAAATGTTAAAGTACCTGCCGAACGGGGAAAAGTTCTGTTCTGGT
ACAATCTTAATGGCGACACCCACGACATGGAGCCCACCACTATGCACGCC
GCTTGTCCCGTCTTTCATGGTTCCAAATGGGTAATGACAGCCTGGATACA
CGAATATGACGCAAGCTTTCTAGACCAT

BO08076.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaNE3-RA 1446 CG31017-PA 1..1443 18..1460 7215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaNE3-RA 1627 CG31017-RA 8..1450 18..1460 7215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30605076..30605663 675..1262 2940 100 Plus
3R 32079331 3R 30604827..30605020 482..675 970 100 Plus
3R 32079331 3R 30605704..30605884 1251..1431 875 98.9 Plus
3R 32079331 3R 30604188..30604348 18..178 805 100 Plus
3R 32079331 3R 30604405..30604558 177..330 770 100 Plus
3R 32079331 3R 30604615..30604767 329..481 765 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:17:05 has no hits.

BO08076.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:28 Download gff for BO08076.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 7..1450 17..1462 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:52 Download gff for BO08076.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 7..1450 17..1462 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:30 Download gff for BO08076.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 7..1450 17..1462 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:30 Download gff for BO08076.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30604187..30604348 17..178 99 -> Plus
3R 30604407..30604558 179..330 100 -> Plus
3R 30604617..30604767 331..481 100 -> Plus
3R 30604827..30605020 482..675 100 -> Plus
3R 30605077..30605663 676..1262 100 -> Plus
3R 30605716..30605884 1263..1431 100 -> Plus
3R 30605939..30605967 1432..1462 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:52 Download gff for BO08076.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26429909..26430070 17..178 99 -> Plus
arm_3R 26430129..26430280 179..330 100 -> Plus
arm_3R 26430339..26430489 331..481 100 -> Plus
arm_3R 26430549..26430742 482..675 100 -> Plus
arm_3R 26430799..26431385 676..1262 100 -> Plus
arm_3R 26431438..26431606 1263..1431 100 -> Plus
arm_3R 26431661..26431689 1432..1462 93   Plus

BO08076.pep Sequence

Translation from 17 to 1478

> BO08076.pep
MFCKVESTLNWESRQEFLDTESAKMDLMQLDVELIDNLMNYAEKIDEKAS
QLKRLAQELRQPLHSAKGREEEYLGNPLHSFPLIRHMYQDWRYLEEFMKK
PVGEEEIQFLRRKLPELPWQVDTEEASVSIFRIAETYGMMPWDMANGLID
NVRFNSTLPALDCFEVAKMYFKWGYFKQALQWITISKARMKEEYSGVYEV
LGMNRQDVALLQARCLVELDRRDEAHEVLLDQPDLADNSISLLDQFKANP
YEAIDSSPKLGEGYKRLCRSSFSPNPSKLHCRYNSTTSAFLILAPLKMEE
ISLEPHIVVYHDILPDKDIQQLITLAEPLLKPTEMFDDNKNEARSSYRTP
LGGPLLDSLTQRMRDITGLQIRQGNPINIIKYGFGAPYTNYYDFFKKRNS
ESKGFGDRMATFMFYLNDAPYGGATVFPRLNVKVPAERGKVLFWYNLNGD
THDMEPTTMHAACPVFHGSKWVMTAWIHEYDASFLDH

BO08076.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaNE3-PA 481 CG31017-PA 1..481 1..481 2560 100 Plus
CG31016-PC 536 CG31016-PC 22..516 11..485 914 37.6 Plus
CG31016-PB 536 CG31016-PB 22..516 11..485 914 37.6 Plus
PH4alphaPV-PA 525 CG31015-PA 42..516 27..484 717 34.9 Plus
CG18233-PB 515 CG18233-PB 27..498 13..478 621 30.6 Plus