BO08077.3prime Sequence
933 bp (831 high quality bases) assembled on 2006-01-06
> BO08077.3prime
ATGGTCTAGAAGCTTGCCGTCTGGCTCTTGTCATCACTTTTGACACCCTT
TCCTCCGGACAGCAGGTCCTGGATTTCGATTATTGTCTTGCCCTTGGTCT
CCGGCACGAAGAACAGAGAGTAGAAGAAGGCGATGACCGCGATCGCGGTA
AAGATCCAAAAGGTCGGACCCGGCCCGATCGAGCTCTTGAGGATTGGGAA
GAGCAGCGTGACCACGAAGGCCGACAGCCAGTTGCTGGTGCCGGCAATCG
ATCCTGCCACACTCTTCACATCCTCCGAGAAGAGTTCCGCCATCACCAGC
CACGGCACCGGTCCGAATCCAATCGAGAAGAAGATTATGAAAATGCAGAT
ACTGCTGATCGGCAACCAACCGAAATTGTCCATTGAAGCCGGATCGTTCT
CCTTTAGCTGAAAGTACACGCCCATCAGTGCAGTGGACACGGCCATCAGA
ACGCCAGAGATAAGGAGCAGGATGCGACGGCCAGCCTTGTCGATAATGGC
CACGGCAACCAGCGTGCTGGTCACTTGGGTGACTCCAATGATAAGCGTGG
CATCGCTGCCACTTATGTCAGAGCCCGTATCCTCGAAAATGGAGGCGGAG
TAGAAGAGAACGGCGTTGATTCCCGTCCACTGCTGGAAGACCTGCAGGAG
CACAGCGATTCCAAGACCCTTCAGGACGATGGGTCGACGAAGGGAGGACA
GAATGTTGACCTGTGGCATATCAATCTGCTTCTGGGACTCCTCCAGGATC
TCCTTGAGCTCGTCATCGATATCGGCATCCTTGCCGCGCAGCCACTGCAA
GGCCTTGGCGGCATCATCGTTGCGTCCCTTCATGGCCAGGTAGACGGGTG
ACTCCGGCATGAAGAAGTGTATGATAGCAAAGATTACGGGCAGAATAGCG
CACAGGATATTGATGGTGAGCAGGGGCAGGAAG
BO08077.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6484-PA | 1398 | CG6484-RA | 480..1395 | 933..18 | 4580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:39:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6484-RA | 1590 | CG6484-RA | 549..1464 | 933..18 | 4580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:39:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17582133..17582828 | 18..713 | 3480 | 100 | Plus |
2R | 25286936 | 2R | 17583240..17583464 | 709..933 | 1125 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:39:54 has no hits.
BO08077.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:17 Download gff for
BO08077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6484-PA | 480..1398 | 15..933 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:17 Download gff for
BO08077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6484-PA | 480..1398 | 15..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:59:35 Download gff for
BO08077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6484-RA | 549..1464 | 18..933 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:25:42 Download gff for
BO08077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6484-RA | 549..1464 | 18..933 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:25:42 Download gff for
BO08077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17582133..17582825 | 18..710 | 100 | <- | Plus |
2R | 17583242..17583464 | 711..933 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:59:35 Download gff for
BO08077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13469638..13470330 | 18..710 | 100 | <- | Plus |
arm_2R | 13470747..13470969 | 711..933 | 100 | | Plus |
BO08077.5prime Sequence
843 bp (842 high quality bases) assembled on 2006-01-06
> BO08077.5prime
GAAGTTATCAGTCGACATGTCCAAGGGATCGGTGTTGCCACAATATATTG
CTGGCTTGTCGGCCAGCTTTGGTGCCCTCTGCATGGGCGCCTCCATTGGT
TGGTCCTCGCCCGTGGAGAATATGATAACGGTGAACACGGAATACGGCTT
TCCCATTAGCTCCAGTCAGTTCGGCTGGGTATCCTCGCTGCTGACCCTGG
GCGCCACTGTGATCTGCATTCCCATTGGTTTCGCCATCGATTGGATCGGC
AGGAGACCCACTATGTTAGCCCTAATTCCACCGTACATGGTGGGCTGGGT
GCTGATGCTGTTCGCCAAAAACGTGACCATGCTCTACTTCGGACGATTCA
TTCTTGGCATGTGCGGCGGAGCCTTTTGCGTAACAGCTCCCATGTACTGT
ACAGAGATTACGGCGACAGCACTACGAGGCACCATCGGATCCTTTTTCCA
GCTGCTGATTGTGTCGGGCGTGCTGTACGGCTATTTGGTGGGCGCCTTCC
TGCCCCTGCTCACCATCAATATCCTGTGCGCTATTCTGCCCGTAATCTTT
GCTATCATACACTTCTTCATGCCGGAGTCACCCGTCTACCTGGCCATGAA
GGGACGCAACGATGATGCCGCCAAGGCCTTGCAGTGGCTGCGCGGCAAGG
ATGCCGATATCGATGACGAGCTCAAGGAGATCCTGGAGGAGTCCCAGAAG
CAGATTGATATGCCACAGGTCAACATTCTGTCCTCCCTTCGTCGACCCAT
CGTCCTGAAGGGTCTTGGAATCGCTGTGCTCCTGCANGTCTTCCAGCAGT
GGACGGGAATCAACGCCGTTCTCTTCTACTCCGCCTCCATTTT
BO08077.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6484-PA | 1398 | CG6484-RA | 1..827 | 17..843 | 4116 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:02:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6484-RA | 1590 | CG6484-RA | 65..896 | 12..843 | 4134 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:02:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17583240..17583948 | 720..12 | 3530 | 99.9 | Minus |
2R | 25286936 | 2R | 17582701..17582828 | 843..716 | 629 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:02:46 has no hits.
BO08077.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:18 Download gff for
BO08077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6484-PA | 1..827 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:18 Download gff for
BO08077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6484-PA | 1..827 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:13 Download gff for
BO08077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6484-RA | 65..896 | 12..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:25:45 Download gff for
BO08077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6484-RA | 65..896 | 12..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:25:45 Download gff for
BO08077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17582701..17582825 | 719..843 | 99 | <- | Minus |
2R | 17583242..17583948 | 12..718 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:13 Download gff for
BO08077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13470206..13470330 | 719..843 | 99 | <- | Minus |
arm_2R | 13470747..13471453 | 12..718 | 99 | | Minus |