Clone BO08077 Report

Search the DGRC for BO08077

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:80
Well:77
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

BO08077.3prime Sequence

933 bp (831 high quality bases) assembled on 2006-01-06

> BO08077.3prime
ATGGTCTAGAAGCTTGCCGTCTGGCTCTTGTCATCACTTTTGACACCCTT
TCCTCCGGACAGCAGGTCCTGGATTTCGATTATTGTCTTGCCCTTGGTCT
CCGGCACGAAGAACAGAGAGTAGAAGAAGGCGATGACCGCGATCGCGGTA
AAGATCCAAAAGGTCGGACCCGGCCCGATCGAGCTCTTGAGGATTGGGAA
GAGCAGCGTGACCACGAAGGCCGACAGCCAGTTGCTGGTGCCGGCAATCG
ATCCTGCCACACTCTTCACATCCTCCGAGAAGAGTTCCGCCATCACCAGC
CACGGCACCGGTCCGAATCCAATCGAGAAGAAGATTATGAAAATGCAGAT
ACTGCTGATCGGCAACCAACCGAAATTGTCCATTGAAGCCGGATCGTTCT
CCTTTAGCTGAAAGTACACGCCCATCAGTGCAGTGGACACGGCCATCAGA
ACGCCAGAGATAAGGAGCAGGATGCGACGGCCAGCCTTGTCGATAATGGC
CACGGCAACCAGCGTGCTGGTCACTTGGGTGACTCCAATGATAAGCGTGG
CATCGCTGCCACTTATGTCAGAGCCCGTATCCTCGAAAATGGAGGCGGAG
TAGAAGAGAACGGCGTTGATTCCCGTCCACTGCTGGAAGACCTGCAGGAG
CACAGCGATTCCAAGACCCTTCAGGACGATGGGTCGACGAAGGGAGGACA
GAATGTTGACCTGTGGCATATCAATCTGCTTCTGGGACTCCTCCAGGATC
TCCTTGAGCTCGTCATCGATATCGGCATCCTTGCCGCGCAGCCACTGCAA
GGCCTTGGCGGCATCATCGTTGCGTCCCTTCATGGCCAGGTAGACGGGTG
ACTCCGGCATGAAGAAGTGTATGATAGCAAAGATTACGGGCAGAATAGCG
CACAGGATATTGATGGTGAGCAGGGGCAGGAAG

BO08077.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6484-PA 1398 CG6484-RA 480..1395 933..18 4580 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6484-RA 1590 CG6484-RA 549..1464 933..18 4580 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17582133..17582828 18..713 3480 100 Plus
2R 25286936 2R 17583240..17583464 709..933 1125 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:39:54 has no hits.

BO08077.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:17 Download gff for BO08077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6484-PA 480..1398 15..933 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:17 Download gff for BO08077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6484-PA 480..1398 15..933 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:59:35 Download gff for BO08077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6484-RA 549..1464 18..933 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:25:42 Download gff for BO08077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6484-RA 549..1464 18..933 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:25:42 Download gff for BO08077.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17582133..17582825 18..710 100 <- Plus
2R 17583242..17583464 711..933 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:59:35 Download gff for BO08077.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13469638..13470330 18..710 100 <- Plus
arm_2R 13470747..13470969 711..933 100   Plus

BO08077.5prime Sequence

843 bp (842 high quality bases) assembled on 2006-01-06

> BO08077.5prime
GAAGTTATCAGTCGACATGTCCAAGGGATCGGTGTTGCCACAATATATTG
CTGGCTTGTCGGCCAGCTTTGGTGCCCTCTGCATGGGCGCCTCCATTGGT
TGGTCCTCGCCCGTGGAGAATATGATAACGGTGAACACGGAATACGGCTT
TCCCATTAGCTCCAGTCAGTTCGGCTGGGTATCCTCGCTGCTGACCCTGG
GCGCCACTGTGATCTGCATTCCCATTGGTTTCGCCATCGATTGGATCGGC
AGGAGACCCACTATGTTAGCCCTAATTCCACCGTACATGGTGGGCTGGGT
GCTGATGCTGTTCGCCAAAAACGTGACCATGCTCTACTTCGGACGATTCA
TTCTTGGCATGTGCGGCGGAGCCTTTTGCGTAACAGCTCCCATGTACTGT
ACAGAGATTACGGCGACAGCACTACGAGGCACCATCGGATCCTTTTTCCA
GCTGCTGATTGTGTCGGGCGTGCTGTACGGCTATTTGGTGGGCGCCTTCC
TGCCCCTGCTCACCATCAATATCCTGTGCGCTATTCTGCCCGTAATCTTT
GCTATCATACACTTCTTCATGCCGGAGTCACCCGTCTACCTGGCCATGAA
GGGACGCAACGATGATGCCGCCAAGGCCTTGCAGTGGCTGCGCGGCAAGG
ATGCCGATATCGATGACGAGCTCAAGGAGATCCTGGAGGAGTCCCAGAAG
CAGATTGATATGCCACAGGTCAACATTCTGTCCTCCCTTCGTCGACCCAT
CGTCCTGAAGGGTCTTGGAATCGCTGTGCTCCTGCANGTCTTCCAGCAGT
GGACGGGAATCAACGCCGTTCTCTTCTACTCCGCCTCCATTTT

BO08077.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6484-PA 1398 CG6484-RA 1..827 17..843 4116 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6484-RA 1590 CG6484-RA 65..896 12..843 4134 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17583240..17583948 720..12 3530 99.9 Minus
2R 25286936 2R 17582701..17582828 843..716 629 99.2 Minus
Blast to na_te.dros performed on 2015-02-11 03:02:46 has no hits.

BO08077.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:18 Download gff for BO08077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6484-PA 1..827 17..843 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:18 Download gff for BO08077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6484-PA 1..827 17..843 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:13 Download gff for BO08077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6484-RA 65..896 12..843 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:25:45 Download gff for BO08077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6484-RA 65..896 12..843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:25:45 Download gff for BO08077.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17582701..17582825 719..843 99 <- Minus
2R 17583242..17583948 12..718 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:13 Download gff for BO08077.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13470206..13470330 719..843 99 <- Minus
arm_2R 13470747..13471453 12..718 99   Minus