Clone Sequence Records
BO08079.3prime Sequence
886 bp (820 high quality bases) assembled on 2006-01-06
> BO08079.3prime
ATGGTCTAGAAAGCTTGCGCCGGACTTTCCGTTCAGCATTCCGGACAGCT
CCTGGGTGCCACCCTCCTCGGCGGTTTCTTGCGGCGCCGGCTTCTTGCCG
AAGTTCTCCCCATCCTCGATGGTCTCCGGCATGGGTTTGTTAAGGGTCTC
CGGCAAGAGCAGGGACAGCAGGCCAGCGGTGAGAGACAGTGCTCCGCAGA
TGATCAGCGGCAGCGGTCGCCAGATCTCGCCCAGCAGTTTTAGGTAGGGT
GCCAGAATGCCACCCACGCGAGCCACCATGGAGGAGGCTCCCAGACCCAC
ATTCCGCACCACAGTCGGGAACTGTTCCGCTGAGAATATGTAGATGGTTC
CATACGACGAGGTAATAGCCAGCTTTCCTATCATGGCGCAGGCAACGATC
AGCCAATTCATGTCGCTCGGCACGAAGATGGTGGCCAGCAGACTAATTCC
GGCCACCATCATGGTACCGCACAGGATGGAGCGACGACCCCAACGGTTCA
AAGTGAAGAGGAGCAGCGTATAGCCGGGAATTTCCACGGCACCAGAGATC
ATAAAGTTAACCAATTGGTTTCCACCCAGATTGTTGGTGTTCCACGACAG
GCCGTAGTAAACGCCACTGTTCACAAACCAATCGAAGAAGATGAGCAGGG
TTTTCCGTCGAAGATTCGGATAGCGCAGGAGATCGAACACAGTGGCCGCT
GGTTGGGAGGCGGCCATCTCGTCCTGCTTCTTCTTTTCGGCCACCTCGTC
CACCAGCTGCTCGTAGATTTCATTGGGCACCTCCACCTTGTTCTCCTTGG
CCGCCTTCTCGATGATCACAAAGGGCTCATCCTTGCGACCCTTCATCAAG
AGCCAACGGGCAGACTCGGGAATGATCCAGTAGTAG
BO08079.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6331-PA | 1647 | Orct-RA | 777..1644 | 886..19 | 4290 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:37:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Orct-RB | 2154 | CG6331-RB | 1083..1950 | 886..19 | 4310 | 99.8 | Minus |
Orct-RA | 2533 | CG6331-RA | 1462..2329 | 886..19 | 4310 | 99.8 | Minus |
Orct2-RB | 2700 | CG13610-RB | 1379..1991 | 703..91 | 620 | 74.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:37:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24277721..24278588 | 886..19 | 4310 | 99.8 | Minus |
3R | 32079331 | 3R | 24274407..24275019 | 703..91 | 560 | 72.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:37:23 has no hits.
BO08079.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:21 Download gff for
BO08079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Orct-PA | 777..1647 | 15..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:23 Download gff for
BO08079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6331-PA | 777..1647 | 15..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:38:22 Download gff for
BO08079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Orct-RA | 1462..2334 | 11..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:04 Download gff for
BO08079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Orct-RA | 1462..2334 | 11..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:04 Download gff for
BO08079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24277721..24278593 | 11..886 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:38:22 Download gff for
BO08079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20103443..20104315 | 11..886 | 99 | | Minus |
BO08079.5prime Sequence
884 bp (835 high quality bases) assembled on 2006-01-06
> BO08079.5prime
GAAGTTATCAGTCGACATGGGCTACGACGACGTCATCACCCACCTGGGTG
AATTCGGTCCGTATCAGAAGCGCATCTACTACCTTCTCTGCCTGCCGGCT
ATAGTCTGCGCCTTCCACAAGCTGGCCGGAGTGTTCCTGCTGGCCAAACC
CGACTTCCGATGTGCCCTGCCATACGAAAATGGCAGTATCTATGAACTAT
CACCCCACCTGTGGAACCTATCGTATCCGGAGAATGAAAGGTGCTCCTAC
TACGATGTGGATTACACGGAGGAGTACCTGAATGGCAGCATTCCACGGAG
CAGCAACGAAACCAAGACCTGTTCCAGCTACGTTTACGATCGGAGCAAGT
ATCTCAATAGTGCGGTGACCGAGTGGAACCTGGTCTGCAGTCGAAGCCTG
CTAAGTGCCACCAGTGATTCGTTATTCATGCTGGGCGTGCTCCTGGGCAG
CTTAATCTTTGGCCAGATGTCCGACAAGCTGGGACGCAAGCCCACCTTCT
TCGCCTCACTGGTGCTTCAGCTAATCTTCGGCGTTTTGGCTGCCGTGGCA
CCCGAATACTTTAGCTACACGATTTCCCGTATGATTGTGGGCGCCACCAC
TTCGGGAGTCTTCCTGGTTGCCTATGTCATCGCCCTGGAGATGGTGGGCT
CCTCGTATCGCCTCTTTGCCGGCGTGGCCATGCAGATGTTCTTCTCCGTG
GGCTTTATGCTCACGGCCGGCTTTGCCTACTTCATCCACGACTGGCGTTG
GCTGCAGATTGCTATAACCTTGCCGGGACTGCTCTTCCTTTGCTACTACT
GGATCATTCCGGAGTCTGCCCGTTGGCTCTTGATGAANGGTCGCAAGGAT
GAGGCCTTTGTGATCATCGAGAAAGCGGCCAAGG
BO08079.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6331-PA | 1647 | Orct-RA | 1..868 | 17..884 | 4296 | 99.7 | Plus |
CG13610-PA | 1704 | Orct2-RA | 188..368 | 204..384 | 880 | 99.4 | Plus |
CG13610-PA | 1704 | Orct2-RA | 94..155 | 110..171 | 210 | 93.5 | Plus |
CG13610-PA | 1704 | Orct2-RA | 669..747 | 685..763 | 170 | 88.6 | Plus |
CG13610-PA | 1704 | Orct2-RA | 394..435 | 410..451 | 135 | 92.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:32:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Orct-RB | 2154 | CG6331-RB | 307..1174 | 17..884 | 4314 | 99.8 | Plus |
Orct-RA | 2533 | CG6331-RA | 686..1553 | 17..884 | 4314 | 99.8 | Plus |
Orct2-RB | 2700 | CG13610-RB | 401..1235 | 16..850 | 1719 | 81.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:32:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24276945..24277812 | 17..884 | 4314 | 99.8 | Plus |
3R | 32079331 | 3R | 24273429..24274263 | 16..850 | 1719 | 80.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:32:06 has no hits.
BO08079.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:22 Download gff for
BO08079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Orct-PA | 1..868 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:24 Download gff for
BO08079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6331-PA | 1..868 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:50:13 Download gff for
BO08079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Orct-RA | 681..1553 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:06:02 Download gff for
BO08079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Orct-RA | 681..1553 | 9..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:06:02 Download gff for
BO08079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24276940..24277812 | 9..884 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:50:13 Download gff for
BO08079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20102662..20103534 | 9..884 | 99 | | Plus |
BO08079.complete Sequence
1678 bp assembled on 2008-08-14
GenBank Submission: FJ631042
> BO08079.complete
GAAGTTATCAGTCGACATGGGCTACGACGACGTCATCACCCACCTGGGTG
AATTCGGTCCGTATCAGAAGCGCATCTACTACCTTCTCTGCCTGCCGGCT
ATAGTCTGCGCCTTCCACAAGCTGGCCGGAGTGTTCCTGCTGGCCAAACC
CGACTTCCGATGTGCCCTGCCATACGAAAATGGCAGTATCTATGAACTAT
CACCCCACCTGTGGAACCTATCGTATCCGGAGAATGAAAGGTGCTCCTAC
TACGATGTGGATTACACGGAGGAGTACCTGAATGGCAGCATTCCACGGAG
CAGCAACGAAACCAAGACCTGTTCCAGCTACGTTTACGATCGGAGCAAGT
ATCTCAATAGTGCGGTGACCGAGTGGAACCTGGTCTGCAGTCGAAGCCTG
CTAAGTGCCACCAGTGATTCGTTATTCATGCTGGGCGTGCTCCTGGGCAG
CTTAATCTTTGGCCAGATGTCCGACAAGCTGGGACGCAAGCCCACCTTCT
TCGCCTCACTGGTGCTTCAGCTAATCTTCGGCGTTTTGGCTGCCGTGGCA
CCCGAATACTTTAGCTACACGATTTCCCGTATGATTGTGGGCGCCACCAC
TTCGGGAGTCTTCCTGGTTGCCTATGTCATCGCCCTGGAGATGGTGGGCT
CCTCGTATCGCCTCTTTGCCGGCGTGGCCATGCAGATGTTCTTCTCCGTG
GGCTTTATGCTCACGGCCGGCTTTGCCTACTTCATCCACGACTGGCGTTG
GCTGCAGATTGCTATAACCTTGCCGGGACTGCTCTTCCTTTGCTACTACT
GGATCATTCCGGAGTCTGCCCGTTGGCTCTTGATGAAGGGTCGCAAGGAT
GAGGCCTTTGTGATCATCGAGAAGGCGGCCAAGGAGAACAAGGTGGAGGT
GCCCAATGAAATCTACGAGCAGCTGGTGGACGAGGTGGCCGAAAAGAAGA
AGCAGGACGAGATGGCCGCCTCCCAACCAGCGGCCACTGTGTTCGATCTC
CTGCGCTATCCGAATCTTCGACGGAAAACCCTGCTCATCTTCTTCGATTG
GTTTGTGAACAGTGGCGTTTACTACGGCCTGTCGTGGAACACCAACAATC
TGGGTGGAAACCAATTGGTTAACTTTATGATCTCTGGTGCCGTGGAAATT
CCCGGCTATACGCTGCTCCTCTTCACTTTGAACCGTTGGGGTCGTCGCTC
CATCCTGTGCGGTACCATGATGGTGGCCGGAATTAGTCTGCTGGCCACCA
TCTTCGTGCCGAGCGACATGAATTGGCTGATCGTTGCCTGCGCCATGATA
GGAAAGCTGGCTATTACCTCGTCGTATGGAACCATCTACATATTCTCAGC
GGAACAGTTCCCGACTGTGGTGCGGAATGTGGGTCTGGGAGCCTCCTCCA
TGGTGGCTCGCGTGGGTGGCATTCTGGCACCCTACCTAAAACTGCTGGGC
GAGATCTGGCGACCGCTGCCGCTGATCATCTGCGGAGCACTGTCTCTCAC
CGCTGGCCTGCTGTCCCTGCTCTTGCCGGAGACCCTTAACAAACCCATGC
CGGAGACCATCGAGGATGGGGAGAACTTCGGCAAGAAGCCGGCGCCGCAA
GAAACCGCCGAGGAGGGTGGCACCCAGGAGCTGTCCGGAATGCTGAACGG
AAAGTCCGGCGCAAGCTTTCTAGACCAT
BO08079.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Orct-RB | 1647 | CG6331-PB | 1..1644 | 17..1660 | 8220 | 100 | Plus |
Orct-RA | 1647 | CG6331-PA | 1..1644 | 17..1660 | 8220 | 100 | Plus |
Orct2-RB | 1704 | CG13610-PB | 1..863 | 17..879 | 1735 | 80.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Orct-RB | 2154 | CG6331-RB | 307..1950 | 17..1660 | 8220 | 100 | Plus |
Orct-RA | 2533 | CG6331-RA | 686..2329 | 17..1660 | 8220 | 100 | Plus |
Orct2-RB | 2700 | CG13610-RB | 401..1264 | 16..879 | 1740 | 80.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24276945..24278588 | 17..1660 | 8220 | 100 | Plus |
3R | 32079331 | 3R | 24273429..24274292 | 16..879 | 1740 | 80.1 | Plus |
3R | 32079331 | 3R | 24274407..24275019 | 976..1588 | 560 | 72.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:56:25 has no hits.
BO08079.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:12 Download gff for
BO08079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Orct-RA | 681..2334 | 9..1668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:11 Download gff for
BO08079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Orct-RA | 686..2329 | 17..1662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:28 Download gff for
BO08079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Orct-RA | 686..2329 | 17..1662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:13 Download gff for
BO08079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Orct-RA | 686..2329 | 17..1662 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:13 Download gff for
BO08079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24276945..24278588 | 17..1662 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:11 Download gff for
BO08079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20102667..20104310 | 17..1662 | 99 | | Plus |
BO08079.pep Sequence
Translation from 16 to 1678
> BO08079.pep
MGYDDVITHLGEFGPYQKRIYYLLCLPAIVCAFHKLAGVFLLAKPDFRCA
LPYENGSIYELSPHLWNLSYPENERCSYYDVDYTEEYLNGSIPRSSNETK
TCSSYVYDRSKYLNSAVTEWNLVCSRSLLSATSDSLFMLGVLLGSLIFGQ
MSDKLGRKPTFFASLVLQLIFGVLAAVAPEYFSYTISRMIVGATTSGVFL
VAYVIALEMVGSSYRLFAGVAMQMFFSVGFMLTAGFAYFIHDWRWLQIAI
TLPGLLFLCYYWIIPESARWLLMKGRKDEAFVIIEKAAKENKVEVPNEIY
EQLVDEVAEKKKQDEMAASQPAATVFDLLRYPNLRRKTLLIFFDWFVNSG
VYYGLSWNTNNLGGNQLVNFMISGAVEIPGYTLLLFTLNRWGRRSILCGT
MMVAGISLLATIFVPSDMNWLIVACAMIGKLAITSSYGTIYIFSAEQFPT
VVRNVGLGASSMVARVGGILAPYLKLLGEIWRPLPLIICGALSLTAGLLS
LLLPETLNKPMPETIEDGENFGKKPAPQETAEEGGTQELSGMLNGKSGAS
FLDH
BO08079.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Orct-PB | 548 | CG6331-PB | 1..548 | 1..548 | 2851 | 100 | Plus |
Orct-PA | 548 | CG6331-PA | 1..548 | 1..548 | 2851 | 100 | Plus |
Orct2-PB | 567 | CG13610-PB | 1..543 | 1..539 | 2103 | 72.7 | Plus |
Orct2-PA | 567 | CG13610-PA | 1..543 | 1..539 | 2103 | 72.7 | Plus |
CG6126-PA | 555 | CG6126-PA | 8..520 | 4..523 | 907 | 39 | Plus |