Clone BO08079 Report

Search the DGRC for BO08079

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:80
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptOrct-RA
Protein status:BO08079.pep: Imported from assembly
Sequenced Size:1678

Clone Sequence Records

BO08079.3prime Sequence

886 bp (820 high quality bases) assembled on 2006-01-06

> BO08079.3prime
ATGGTCTAGAAAGCTTGCGCCGGACTTTCCGTTCAGCATTCCGGACAGCT
CCTGGGTGCCACCCTCCTCGGCGGTTTCTTGCGGCGCCGGCTTCTTGCCG
AAGTTCTCCCCATCCTCGATGGTCTCCGGCATGGGTTTGTTAAGGGTCTC
CGGCAAGAGCAGGGACAGCAGGCCAGCGGTGAGAGACAGTGCTCCGCAGA
TGATCAGCGGCAGCGGTCGCCAGATCTCGCCCAGCAGTTTTAGGTAGGGT
GCCAGAATGCCACCCACGCGAGCCACCATGGAGGAGGCTCCCAGACCCAC
ATTCCGCACCACAGTCGGGAACTGTTCCGCTGAGAATATGTAGATGGTTC
CATACGACGAGGTAATAGCCAGCTTTCCTATCATGGCGCAGGCAACGATC
AGCCAATTCATGTCGCTCGGCACGAAGATGGTGGCCAGCAGACTAATTCC
GGCCACCATCATGGTACCGCACAGGATGGAGCGACGACCCCAACGGTTCA
AAGTGAAGAGGAGCAGCGTATAGCCGGGAATTTCCACGGCACCAGAGATC
ATAAAGTTAACCAATTGGTTTCCACCCAGATTGTTGGTGTTCCACGACAG
GCCGTAGTAAACGCCACTGTTCACAAACCAATCGAAGAAGATGAGCAGGG
TTTTCCGTCGAAGATTCGGATAGCGCAGGAGATCGAACACAGTGGCCGCT
GGTTGGGAGGCGGCCATCTCGTCCTGCTTCTTCTTTTCGGCCACCTCGTC
CACCAGCTGCTCGTAGATTTCATTGGGCACCTCCACCTTGTTCTCCTTGG
CCGCCTTCTCGATGATCACAAAGGGCTCATCCTTGCGACCCTTCATCAAG
AGCCAACGGGCAGACTCGGGAATGATCCAGTAGTAG

BO08079.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6331-PA 1647 Orct-RA 777..1644 886..19 4290 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
Orct-RB 2154 CG6331-RB 1083..1950 886..19 4310 99.8 Minus
Orct-RA 2533 CG6331-RA 1462..2329 886..19 4310 99.8 Minus
Orct2-RB 2700 CG13610-RB 1379..1991 703..91 620 74.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24277721..24278588 886..19 4310 99.8 Minus
3R 32079331 3R 24274407..24275019 703..91 560 72.8 Minus
Blast to na_te.dros performed on 2015-02-12 04:37:23 has no hits.

BO08079.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:21 Download gff for BO08079.3prime
Subject Subject Range Query Range Percent Splice Strand
Orct-PA 777..1647 15..886 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:23 Download gff for BO08079.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6331-PA 777..1647 15..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:38:22 Download gff for BO08079.3prime
Subject Subject Range Query Range Percent Splice Strand
Orct-RA 1462..2334 11..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:04 Download gff for BO08079.3prime
Subject Subject Range Query Range Percent Splice Strand
Orct-RA 1462..2334 11..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:04 Download gff for BO08079.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24277721..24278593 11..886 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:38:22 Download gff for BO08079.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20103443..20104315 11..886 99   Minus

BO08079.5prime Sequence

884 bp (835 high quality bases) assembled on 2006-01-06

> BO08079.5prime
GAAGTTATCAGTCGACATGGGCTACGACGACGTCATCACCCACCTGGGTG
AATTCGGTCCGTATCAGAAGCGCATCTACTACCTTCTCTGCCTGCCGGCT
ATAGTCTGCGCCTTCCACAAGCTGGCCGGAGTGTTCCTGCTGGCCAAACC
CGACTTCCGATGTGCCCTGCCATACGAAAATGGCAGTATCTATGAACTAT
CACCCCACCTGTGGAACCTATCGTATCCGGAGAATGAAAGGTGCTCCTAC
TACGATGTGGATTACACGGAGGAGTACCTGAATGGCAGCATTCCACGGAG
CAGCAACGAAACCAAGACCTGTTCCAGCTACGTTTACGATCGGAGCAAGT
ATCTCAATAGTGCGGTGACCGAGTGGAACCTGGTCTGCAGTCGAAGCCTG
CTAAGTGCCACCAGTGATTCGTTATTCATGCTGGGCGTGCTCCTGGGCAG
CTTAATCTTTGGCCAGATGTCCGACAAGCTGGGACGCAAGCCCACCTTCT
TCGCCTCACTGGTGCTTCAGCTAATCTTCGGCGTTTTGGCTGCCGTGGCA
CCCGAATACTTTAGCTACACGATTTCCCGTATGATTGTGGGCGCCACCAC
TTCGGGAGTCTTCCTGGTTGCCTATGTCATCGCCCTGGAGATGGTGGGCT
CCTCGTATCGCCTCTTTGCCGGCGTGGCCATGCAGATGTTCTTCTCCGTG
GGCTTTATGCTCACGGCCGGCTTTGCCTACTTCATCCACGACTGGCGTTG
GCTGCAGATTGCTATAACCTTGCCGGGACTGCTCTTCCTTTGCTACTACT
GGATCATTCCGGAGTCTGCCCGTTGGCTCTTGATGAANGGTCGCAAGGAT
GAGGCCTTTGTGATCATCGAGAAAGCGGCCAAGG

BO08079.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6331-PA 1647 Orct-RA 1..868 17..884 4296 99.7 Plus
CG13610-PA 1704 Orct2-RA 188..368 204..384 880 99.4 Plus
CG13610-PA 1704 Orct2-RA 94..155 110..171 210 93.5 Plus
CG13610-PA 1704 Orct2-RA 669..747 685..763 170 88.6 Plus
CG13610-PA 1704 Orct2-RA 394..435 410..451 135 92.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
Orct-RB 2154 CG6331-RB 307..1174 17..884 4314 99.8 Plus
Orct-RA 2533 CG6331-RA 686..1553 17..884 4314 99.8 Plus
Orct2-RB 2700 CG13610-RB 401..1235 16..850 1719 81.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24276945..24277812 17..884 4314 99.8 Plus
3R 32079331 3R 24273429..24274263 16..850 1719 80.4 Plus
Blast to na_te.dros performed on 2015-02-12 00:32:06 has no hits.

BO08079.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:22 Download gff for BO08079.5prime
Subject Subject Range Query Range Percent Splice Strand
Orct-PA 1..868 17..884 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:24 Download gff for BO08079.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6331-PA 1..868 17..884 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:50:13 Download gff for BO08079.5prime
Subject Subject Range Query Range Percent Splice Strand
Orct-RA 681..1553 9..884 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:06:02 Download gff for BO08079.5prime
Subject Subject Range Query Range Percent Splice Strand
Orct-RA 681..1553 9..884 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:06:02 Download gff for BO08079.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24276940..24277812 9..884 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:50:13 Download gff for BO08079.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20102662..20103534 9..884 99   Plus

BO08079.complete Sequence

1678 bp assembled on 2008-08-14

GenBank Submission: FJ631042

> BO08079.complete
GAAGTTATCAGTCGACATGGGCTACGACGACGTCATCACCCACCTGGGTG
AATTCGGTCCGTATCAGAAGCGCATCTACTACCTTCTCTGCCTGCCGGCT
ATAGTCTGCGCCTTCCACAAGCTGGCCGGAGTGTTCCTGCTGGCCAAACC
CGACTTCCGATGTGCCCTGCCATACGAAAATGGCAGTATCTATGAACTAT
CACCCCACCTGTGGAACCTATCGTATCCGGAGAATGAAAGGTGCTCCTAC
TACGATGTGGATTACACGGAGGAGTACCTGAATGGCAGCATTCCACGGAG
CAGCAACGAAACCAAGACCTGTTCCAGCTACGTTTACGATCGGAGCAAGT
ATCTCAATAGTGCGGTGACCGAGTGGAACCTGGTCTGCAGTCGAAGCCTG
CTAAGTGCCACCAGTGATTCGTTATTCATGCTGGGCGTGCTCCTGGGCAG
CTTAATCTTTGGCCAGATGTCCGACAAGCTGGGACGCAAGCCCACCTTCT
TCGCCTCACTGGTGCTTCAGCTAATCTTCGGCGTTTTGGCTGCCGTGGCA
CCCGAATACTTTAGCTACACGATTTCCCGTATGATTGTGGGCGCCACCAC
TTCGGGAGTCTTCCTGGTTGCCTATGTCATCGCCCTGGAGATGGTGGGCT
CCTCGTATCGCCTCTTTGCCGGCGTGGCCATGCAGATGTTCTTCTCCGTG
GGCTTTATGCTCACGGCCGGCTTTGCCTACTTCATCCACGACTGGCGTTG
GCTGCAGATTGCTATAACCTTGCCGGGACTGCTCTTCCTTTGCTACTACT
GGATCATTCCGGAGTCTGCCCGTTGGCTCTTGATGAAGGGTCGCAAGGAT
GAGGCCTTTGTGATCATCGAGAAGGCGGCCAAGGAGAACAAGGTGGAGGT
GCCCAATGAAATCTACGAGCAGCTGGTGGACGAGGTGGCCGAAAAGAAGA
AGCAGGACGAGATGGCCGCCTCCCAACCAGCGGCCACTGTGTTCGATCTC
CTGCGCTATCCGAATCTTCGACGGAAAACCCTGCTCATCTTCTTCGATTG
GTTTGTGAACAGTGGCGTTTACTACGGCCTGTCGTGGAACACCAACAATC
TGGGTGGAAACCAATTGGTTAACTTTATGATCTCTGGTGCCGTGGAAATT
CCCGGCTATACGCTGCTCCTCTTCACTTTGAACCGTTGGGGTCGTCGCTC
CATCCTGTGCGGTACCATGATGGTGGCCGGAATTAGTCTGCTGGCCACCA
TCTTCGTGCCGAGCGACATGAATTGGCTGATCGTTGCCTGCGCCATGATA
GGAAAGCTGGCTATTACCTCGTCGTATGGAACCATCTACATATTCTCAGC
GGAACAGTTCCCGACTGTGGTGCGGAATGTGGGTCTGGGAGCCTCCTCCA
TGGTGGCTCGCGTGGGTGGCATTCTGGCACCCTACCTAAAACTGCTGGGC
GAGATCTGGCGACCGCTGCCGCTGATCATCTGCGGAGCACTGTCTCTCAC
CGCTGGCCTGCTGTCCCTGCTCTTGCCGGAGACCCTTAACAAACCCATGC
CGGAGACCATCGAGGATGGGGAGAACTTCGGCAAGAAGCCGGCGCCGCAA
GAAACCGCCGAGGAGGGTGGCACCCAGGAGCTGTCCGGAATGCTGAACGG
AAAGTCCGGCGCAAGCTTTCTAGACCAT

BO08079.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
Orct-RB 1647 CG6331-PB 1..1644 17..1660 8220 100 Plus
Orct-RA 1647 CG6331-PA 1..1644 17..1660 8220 100 Plus
Orct2-RB 1704 CG13610-PB 1..863 17..879 1735 80.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
Orct-RB 2154 CG6331-RB 307..1950 17..1660 8220 100 Plus
Orct-RA 2533 CG6331-RA 686..2329 17..1660 8220 100 Plus
Orct2-RB 2700 CG13610-RB 401..1264 16..879 1740 80.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24276945..24278588 17..1660 8220 100 Plus
3R 32079331 3R 24273429..24274292 16..879 1740 80.1 Plus
3R 32079331 3R 24274407..24275019 976..1588 560 72.8 Plus
Blast to na_te.dros performed on 2014-11-26 15:56:25 has no hits.

BO08079.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:12 Download gff for BO08079.complete
Subject Subject Range Query Range Percent Splice Strand
Orct-RA 681..2334 9..1668 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:11 Download gff for BO08079.complete
Subject Subject Range Query Range Percent Splice Strand
Orct-RA 686..2329 17..1662 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:28 Download gff for BO08079.complete
Subject Subject Range Query Range Percent Splice Strand
Orct-RA 686..2329 17..1662 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:13 Download gff for BO08079.complete
Subject Subject Range Query Range Percent Splice Strand
Orct-RA 686..2329 17..1662 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:13 Download gff for BO08079.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24276945..24278588 17..1662 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:11 Download gff for BO08079.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20102667..20104310 17..1662 99   Plus

BO08079.pep Sequence

Translation from 16 to 1678

> BO08079.pep
MGYDDVITHLGEFGPYQKRIYYLLCLPAIVCAFHKLAGVFLLAKPDFRCA
LPYENGSIYELSPHLWNLSYPENERCSYYDVDYTEEYLNGSIPRSSNETK
TCSSYVYDRSKYLNSAVTEWNLVCSRSLLSATSDSLFMLGVLLGSLIFGQ
MSDKLGRKPTFFASLVLQLIFGVLAAVAPEYFSYTISRMIVGATTSGVFL
VAYVIALEMVGSSYRLFAGVAMQMFFSVGFMLTAGFAYFIHDWRWLQIAI
TLPGLLFLCYYWIIPESARWLLMKGRKDEAFVIIEKAAKENKVEVPNEIY
EQLVDEVAEKKKQDEMAASQPAATVFDLLRYPNLRRKTLLIFFDWFVNSG
VYYGLSWNTNNLGGNQLVNFMISGAVEIPGYTLLLFTLNRWGRRSILCGT
MMVAGISLLATIFVPSDMNWLIVACAMIGKLAITSSYGTIYIFSAEQFPT
VVRNVGLGASSMVARVGGILAPYLKLLGEIWRPLPLIICGALSLTAGLLS
LLLPETLNKPMPETIEDGENFGKKPAPQETAEEGGTQELSGMLNGKSGAS
FLDH

BO08079.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
Orct-PB 548 CG6331-PB 1..548 1..548 2851 100 Plus
Orct-PA 548 CG6331-PA 1..548 1..548 2851 100 Plus
Orct2-PB 567 CG13610-PB 1..543 1..539 2103 72.7 Plus
Orct2-PA 567 CG13610-PA 1..543 1..539 2103 72.7 Plus
CG6126-PA 555 CG6126-PA 8..520 4..523 907 39 Plus