Clone BO08084 Report

Search the DGRC for BO08084

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:80
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG8026-RB
Protein status:BO08084.pep: validated full length
Sequenced Size:946

Clone Sequence Records

BO08084.3prime Sequence

922 bp (816 high quality bases) assembled on 2006-01-06

> BO08084.3prime
ATGGTCTAGAAAGCTTGCGCTGGTCAGCTTCTCCCAGATCAGCATGACCA
TGCAGATGTTGGGCGTGACGTGGACCAGGTAGGGCACCAGGCCCTTATAG
AAACCTCGCATGCGCTCGTACCTCCAAGTCTGTTTGATGCAGTCCCAGGT
GCCGTTGTATCGGTGATGGTGGTCCTGCAGCCGTGCCCGGACCACCTGGT
ACGGGTAGGTGGCCGCCGCTGCGATCAGCTTGGAGACAGCCGCGAAGGCC
AAGTACTCGGTGGTGGCCAGCTTCGTGTCGATGGGCAGTTTGCGATATTC
GTTGTAGGCGTTCTTCAGCTCCTCGTAGGTCATGAACTGGATGGCTCCGT
GGGAGACGCCCAACATGCCGGGAACAAAGCCGCGGTACAGGCCACGGATT
CCCTCCTCCTTGTATATCTGGCCCAAGGCGTGGATCATGCCCCTGTACTC
GGCACTACTCGCGGCATCGCACTGCAGGCAGAGACGCGTCTTCACCACCC
AGATGGGGTTGGTCAGCAGCAGGGTGAGAATTCCCGACTCAGCAGCTGCA
AGCATGTTCATTGTGGGGCCCAATGGCATGGTCGTGTTTCCTCCTTGGAT
AAATGTCTTAATGGTGTTGTAGAACATGAAGTACAGGCCCCAAGAGGAGC
CCGATCCCCAGACATTGGGGGTGACGCCTTTGTAGAGTCCGCGGAAGCCC
TCTTGCCGGANAATCGTGGTGAAGGCGCTGCTCAGTCCCCGGTATTGCGG
CACCGTAGCTGTCCGGCCATCGTTAACTGCGAATCGAATCTTGATCAAAT
CCAGGGGATGTAGAATGAGTGTGGACACCACTCCGCCGGATACTCCGGCA
ACCAAATGCTCGTACTTGACGTGTGCGAATACGTTGAATTTCTTGGGACT
GCCCGTTGACTGTGCCTTGATC

BO08084.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8026-PB 915 CG8026-RB 9..912 922..19 4501 99.8 Minus
CG8026-PA 1083 CG8026-RA 9..882 922..49 4351 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG45085-RA 2926 CG45085-RA 676..1579 922..19 4509 99.9 Minus
CG8026-RB 2926 CG8026-RB 676..1579 922..19 4509 99.9 Minus
CG45085-RB 1941 CG45085-RB 676..1510 922..88 4014 98.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9188653..9189008 267..622 1780 100 Plus
2R 25286936 2R 9188017..9188266 19..268 1250 100 Plus
2R 25286936 2R 9189067..9189224 623..780 779 99.4 Plus
2R 25286936 2R 9191276..9191421 777..922 730 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:35:59 has no hits.

BO08084.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:28 Download gff for BO08084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8026-PB 9..915 18..922 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:34 Download gff for BO08084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8026-PB 9..915 18..922 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:10:50 Download gff for BO08084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8026-RB 676..1579 19..922 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:27 Download gff for BO08084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8026-RB 676..1579 19..922 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:27 Download gff for BO08084.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9188017..9188265 19..267 100 <- Plus
2R 9188654..9189008 268..622 100 <- Plus
2R 9189067..9189220 623..776 99 <- Plus
2R 9191276..9191421 777..922 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:10:50 Download gff for BO08084.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5076572..5076725 623..776 99 <- Plus
arm_2R 5075522..5075770 19..267 100 <- Plus
arm_2R 5076159..5076513 268..622 100 <- Plus
arm_2R 5078781..5078926 777..922 100   Plus

BO08084.5prime Sequence

944 bp (857 high quality bases) assembled on 2006-01-06

> BO08084.5prime
GAAGTTATCAGTCGACATGAATCCGATCAAGGCACAGTCAACGGGCAGTC
CCAAGAAATTCAACGTATTCGCACACGTCAAGTACGAGCATTTGGTTGCC
GGAGTATCCGGCGGAGTGGTGTCCACACTCATTCTACATCCCCTGGATTT
GATCAAGATTCGATTCGCAGTTAACGATGGCCGGACAGCTACGGTGCCGC
AATACCGGGGACTGAGCAGCGCCTTCACCACGATTTTCCGGCAAGAGGGC
TTCCGCGGACTCTACAAAGGCGTCACCCCCAATGTCTGGGGATCGGGCTC
CTCTTGGGGCCTGTACTTCATGTTCTACAACACCATTAAGACATTTATCC
AAGGAGGAAACACGACCATGCCATTGGGCCCCACAATGAACATGCTTGCA
GCTGCTGAGTCGGGAATTCTCACCCTGCTGCTGACCAACCCCATCTGGGT
GGTGAAGACGCGTCTCTGCCTGCAGTGCGATGCCGCGAGTAGTGCCGAGT
ACAGGGGCATGATCCACGCCTTGGGCCAGATATACAAGGAGGAGGGAATC
CGTGGCCTGTACCGCGGCTTTGTTCCCGGCATGTTGGGCGTCTCCCACGG
AGCCATCCAGTTCATGACCTACGAGGAGCTGAAGAACGCCTACAACGAAT
ATCGCANACTGCCCATCGACACGAAGCTGGCCACCACCGAGTACTTGGCC
TTCGCGGCTGTCTCCAAGCTGATCGCAGCGGCGGCCACCTACCCGTACCA
GGTGGTCCGGGCACGGCTGCAGGACCACCATCACCGATACAACGGCACCT
GGGACTGCATCAAACAGACTTGGAGGTACGAGCGCATGCGAGGTTTCTAT
AAGGGCCTGGTGCCCTACCTGGTCCACGTCACGCCCAACATCTGCATGGT
CATGCTGATCTGGGAAGAGCTGACCAGCGCAAGCTTTCTAGACC

BO08084.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8026-PB 915 CG8026-RB 1..912 17..928 4491 99.6 Plus
CG8026-PA 1083 CG8026-RA 1..882 17..898 4391 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG45085-RA 2926 CG45085-RA 668..1579 17..928 4519 99.7 Plus
CG8026-RB 2926 CG8026-RB 668..1579 17..928 4519 99.7 Plus
CG45085-RB 1941 CG45085-RB 668..1510 17..859 4054 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9188653..9189008 680..325 1769 99.7 Minus
2R 25286936 2R 9188017..9188266 928..679 1220 99.2 Minus
2R 25286936 2R 9189067..9189224 324..167 790 100 Minus
2R 25286936 2R 9191276..9191429 170..17 770 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:10:08 has no hits.

BO08084.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:29 Download gff for BO08084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8026-PB 1..915 17..929 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:35 Download gff for BO08084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8026-PB 1..915 17..929 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:25 Download gff for BO08084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8026-RB 662..1579 9..928 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:10:41 Download gff for BO08084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8026-RB 662..1579 9..928 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:10:41 Download gff for BO08084.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9188017..9188265 680..928 99 <- Minus
2R 9188654..9189008 325..679 99 <- Minus
2R 9189067..9189220 171..324 100 <- Minus
2R 9191276..9191435 9..170 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:25 Download gff for BO08084.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5078781..5078940 9..170 97   Minus
arm_2R 5075522..5075770 680..928 99 <- Minus
arm_2R 5076159..5076513 325..679 99 <- Minus
arm_2R 5076572..5076725 171..324 100 <- Minus

BO08084.complete Sequence

946 bp (946 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631043

> BO08084.complete
GAAGTTATCAGTCGACATGAATCCGATCAAGGCACAGTCAACGGGCAGTC
CCAAGAAATTCAACGTATTCGCACACGTCAAGTACGAGCATTTGGTTGCC
GGAGTATCCGGCGGAGTGGTGTCCACACTCATTCTACATCCCCTGGATTT
GATCAAGATTCGATTCGCAGTTAACGATGGCCGGACAGCTACGGTGCCGC
AATACCGGGGACTGAGCAGCGCCTTCACCACGATTTTCCGGCAAGAGGGC
TTCCGCGGACTCTACAAAGGCGTCACCCCCAATGTCTGGGGATCGGGCTC
CTCTTGGGGCCTGTACTTCATGTTCTACAACACCATTAAGACATTTATCC
AAGGAGGAAACACGACCATGCCATTGGGCCCCACAATGAACATGCTTGCA
GCTGCTGAGTCGGGAATTCTCACCCTGCTGCTGACCAACCCCATCTGGGT
GGTGAAGACGCGTCTCTGCCTGCAGTGCGATGCCGCGAGTAGTGCCGAGT
ACAGGGGCATGATCCACGCCTTGGGCCAGATATACAAGGAGGAGGGAATC
CGTGGCCTGTACCGCGGCTTTGTTCCCGGCATGTTGGGCGTCTCCCACGG
AGCCATCCAGTTCATGACCTACGAGGAGCTGAAGAACGCCTACAACGAAT
ATCGCAAACTGCCCATCGACACGAAGCTGGCCACCACCGAGTACTTGGCC
TTCGCGGCTGTCTCCAAGCTGATCGCAGCGGCGGCCACCTACCCGTACCA
GGTGGTCCGGGCACGGCTGCAGGACCACCATCACCGATACAACGGCACCT
GGGACTGCATCAAACAGACTTGGAGGTACGAGCGCATGCGAGGTTTCTAT
AAGGGCCTGGTGCCCTACCTGGTCCACGTCACGCCCAACATCTGCATGGT
CATGCTGATCTGGGAGAAGCTGACCAGCGCAAGCTTTCTAGACCAT

BO08084.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8026-RB 915 CG8026-PB 1..912 17..928 4560 100 Plus
CG8026-RD 969 CG8026-PD 1..843 17..859 4065 98.8 Plus
CG8026-RC 612 CG8026-PC 1..609 320..928 3045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG45085-RA 2926 CG45085-RA 668..1579 17..928 4560 100 Plus
CG8026-RB 2926 CG8026-RB 668..1579 17..928 4560 100 Plus
CG45085-RB 1941 CG45085-RB 668..1510 17..859 4065 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9188653..9189008 680..325 1780 100 Minus
2R 25286936 2R 9188017..9188266 928..679 1250 100 Minus
2R 25286936 2R 9189067..9189224 324..167 790 100 Minus
2R 25286936 2R 9191276..9191429 170..17 770 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:58:59 has no hits.

BO08084.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:20 Download gff for BO08084.complete
Subject Subject Range Query Range Percent Splice Strand
CG8026-RB 1..915 17..929 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:30 Download gff for BO08084.complete
Subject Subject Range Query Range Percent Splice Strand
CG8026-RB 661..1578 9..928 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:24 Download gff for BO08084.complete
Subject Subject Range Query Range Percent Splice Strand
CG8026-RB 668..1579 17..930 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:20 Download gff for BO08084.complete
Subject Subject Range Query Range Percent Splice Strand
CG8026-RB 661..1578 9..928 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:43 Download gff for BO08084.complete
Subject Subject Range Query Range Percent Splice Strand
CG8026-RB 668..1579 17..930 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:43 Download gff for BO08084.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9188015..9188265 680..930 99 <- Minus
2R 9188654..9189008 325..679 100 <- Minus
2R 9189067..9189220 171..324 100 <- Minus
2R 9191276..9191429 17..170 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:24 Download gff for BO08084.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5075520..5075770 680..930 99 <- Minus
arm_2R 5076159..5076513 325..679 100 <- Minus
arm_2R 5076572..5076725 171..324 100 <- Minus
arm_2R 5078781..5078934 17..170 100   Minus

BO08084.pep Sequence

Translation from 16 to 946

> BO08084.pep
MNPIKAQSTGSPKKFNVFAHVKYEHLVAGVSGGVVSTLILHPLDLIKIRF
AVNDGRTATVPQYRGLSSAFTTIFRQEGFRGLYKGVTPNVWGSGSSWGLY
FMFYNTIKTFIQGGNTTMPLGPTMNMLAAAESGILTLLLTNPIWVVKTRL
CLQCDAASSAEYRGMIHALGQIYKEEGIRGLYRGFVPGMLGVSHGAIQFM
TYEELKNAYNEYRKLPIDTKLATTEYLAFAAVSKLIAAAATYPYQVVRAR
LQDHHHRYNGTWDCIKQTWRYERMRGFYKGLVPYLVHVTPNICMVMLIWE
KLTSASFLDH

BO08084.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8026-PB 304 CG8026-PB 1..304 1..304 1612 100 Plus
CG8026-PD 322 CG8026-PD 1..303 1..303 1493 93.4 Plus
CG8026-PC 203 CG8026-PC 1..203 102..304 1081 100 Plus
Rim2-PC 358 CG18317-PC 73..338 35..300 343 30.1 Plus
Rim2-PD 272 CG18317-PD 7..252 55..300 338 30.5 Plus
CG8026-PC 203 CG8026-PC 24..188 25..193 169 27.9 Plus