Clone Sequence Records
BO08084.3prime Sequence
922 bp (816 high quality bases) assembled on 2006-01-06
> BO08084.3prime
ATGGTCTAGAAAGCTTGCGCTGGTCAGCTTCTCCCAGATCAGCATGACCA
TGCAGATGTTGGGCGTGACGTGGACCAGGTAGGGCACCAGGCCCTTATAG
AAACCTCGCATGCGCTCGTACCTCCAAGTCTGTTTGATGCAGTCCCAGGT
GCCGTTGTATCGGTGATGGTGGTCCTGCAGCCGTGCCCGGACCACCTGGT
ACGGGTAGGTGGCCGCCGCTGCGATCAGCTTGGAGACAGCCGCGAAGGCC
AAGTACTCGGTGGTGGCCAGCTTCGTGTCGATGGGCAGTTTGCGATATTC
GTTGTAGGCGTTCTTCAGCTCCTCGTAGGTCATGAACTGGATGGCTCCGT
GGGAGACGCCCAACATGCCGGGAACAAAGCCGCGGTACAGGCCACGGATT
CCCTCCTCCTTGTATATCTGGCCCAAGGCGTGGATCATGCCCCTGTACTC
GGCACTACTCGCGGCATCGCACTGCAGGCAGAGACGCGTCTTCACCACCC
AGATGGGGTTGGTCAGCAGCAGGGTGAGAATTCCCGACTCAGCAGCTGCA
AGCATGTTCATTGTGGGGCCCAATGGCATGGTCGTGTTTCCTCCTTGGAT
AAATGTCTTAATGGTGTTGTAGAACATGAAGTACAGGCCCCAAGAGGAGC
CCGATCCCCAGACATTGGGGGTGACGCCTTTGTAGAGTCCGCGGAAGCCC
TCTTGCCGGANAATCGTGGTGAAGGCGCTGCTCAGTCCCCGGTATTGCGG
CACCGTAGCTGTCCGGCCATCGTTAACTGCGAATCGAATCTTGATCAAAT
CCAGGGGATGTAGAATGAGTGTGGACACCACTCCGCCGGATACTCCGGCA
ACCAAATGCTCGTACTTGACGTGTGCGAATACGTTGAATTTCTTGGGACT
GCCCGTTGACTGTGCCTTGATC
BO08084.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8026-PB | 915 | CG8026-RB | 9..912 | 922..19 | 4501 | 99.8 | Minus |
CG8026-PA | 1083 | CG8026-RA | 9..882 | 922..49 | 4351 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:36:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45085-RA | 2926 | CG45085-RA | 676..1579 | 922..19 | 4509 | 99.9 | Minus |
CG8026-RB | 2926 | CG8026-RB | 676..1579 | 922..19 | 4509 | 99.9 | Minus |
CG45085-RB | 1941 | CG45085-RB | 676..1510 | 922..88 | 4014 | 98.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:35:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9188653..9189008 | 267..622 | 1780 | 100 | Plus |
2R | 25286936 | 2R | 9188017..9188266 | 19..268 | 1250 | 100 | Plus |
2R | 25286936 | 2R | 9189067..9189224 | 623..780 | 779 | 99.4 | Plus |
2R | 25286936 | 2R | 9191276..9191421 | 777..922 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:35:59 has no hits.
BO08084.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:28 Download gff for
BO08084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-PB | 9..915 | 18..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:34 Download gff for
BO08084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-PB | 9..915 | 18..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:10:50 Download gff for
BO08084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-RB | 676..1579 | 19..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:27 Download gff for
BO08084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-RB | 676..1579 | 19..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:27 Download gff for
BO08084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9188017..9188265 | 19..267 | 100 | <- | Plus |
2R | 9188654..9189008 | 268..622 | 100 | <- | Plus |
2R | 9189067..9189220 | 623..776 | 99 | <- | Plus |
2R | 9191276..9191421 | 777..922 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:10:50 Download gff for
BO08084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5076572..5076725 | 623..776 | 99 | <- | Plus |
arm_2R | 5075522..5075770 | 19..267 | 100 | <- | Plus |
arm_2R | 5076159..5076513 | 268..622 | 100 | <- | Plus |
arm_2R | 5078781..5078926 | 777..922 | 100 | | Plus |
BO08084.5prime Sequence
944 bp (857 high quality bases) assembled on 2006-01-06
> BO08084.5prime
GAAGTTATCAGTCGACATGAATCCGATCAAGGCACAGTCAACGGGCAGTC
CCAAGAAATTCAACGTATTCGCACACGTCAAGTACGAGCATTTGGTTGCC
GGAGTATCCGGCGGAGTGGTGTCCACACTCATTCTACATCCCCTGGATTT
GATCAAGATTCGATTCGCAGTTAACGATGGCCGGACAGCTACGGTGCCGC
AATACCGGGGACTGAGCAGCGCCTTCACCACGATTTTCCGGCAAGAGGGC
TTCCGCGGACTCTACAAAGGCGTCACCCCCAATGTCTGGGGATCGGGCTC
CTCTTGGGGCCTGTACTTCATGTTCTACAACACCATTAAGACATTTATCC
AAGGAGGAAACACGACCATGCCATTGGGCCCCACAATGAACATGCTTGCA
GCTGCTGAGTCGGGAATTCTCACCCTGCTGCTGACCAACCCCATCTGGGT
GGTGAAGACGCGTCTCTGCCTGCAGTGCGATGCCGCGAGTAGTGCCGAGT
ACAGGGGCATGATCCACGCCTTGGGCCAGATATACAAGGAGGAGGGAATC
CGTGGCCTGTACCGCGGCTTTGTTCCCGGCATGTTGGGCGTCTCCCACGG
AGCCATCCAGTTCATGACCTACGAGGAGCTGAAGAACGCCTACAACGAAT
ATCGCANACTGCCCATCGACACGAAGCTGGCCACCACCGAGTACTTGGCC
TTCGCGGCTGTCTCCAAGCTGATCGCAGCGGCGGCCACCTACCCGTACCA
GGTGGTCCGGGCACGGCTGCAGGACCACCATCACCGATACAACGGCACCT
GGGACTGCATCAAACAGACTTGGAGGTACGAGCGCATGCGAGGTTTCTAT
AAGGGCCTGGTGCCCTACCTGGTCCACGTCACGCCCAACATCTGCATGGT
CATGCTGATCTGGGAAGAGCTGACCAGCGCAAGCTTTCTAGACC
BO08084.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8026-PB | 915 | CG8026-RB | 1..912 | 17..928 | 4491 | 99.6 | Plus |
CG8026-PA | 1083 | CG8026-RA | 1..882 | 17..898 | 4391 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45085-RA | 2926 | CG45085-RA | 668..1579 | 17..928 | 4519 | 99.7 | Plus |
CG8026-RB | 2926 | CG8026-RB | 668..1579 | 17..928 | 4519 | 99.7 | Plus |
CG45085-RB | 1941 | CG45085-RB | 668..1510 | 17..859 | 4054 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9188653..9189008 | 680..325 | 1769 | 99.7 | Minus |
2R | 25286936 | 2R | 9188017..9188266 | 928..679 | 1220 | 99.2 | Minus |
2R | 25286936 | 2R | 9189067..9189224 | 324..167 | 790 | 100 | Minus |
2R | 25286936 | 2R | 9191276..9191429 | 170..17 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:10:08 has no hits.
BO08084.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:29 Download gff for
BO08084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-PB | 1..915 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:35 Download gff for
BO08084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-PB | 1..915 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:25 Download gff for
BO08084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-RB | 662..1579 | 9..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:10:41 Download gff for
BO08084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-RB | 662..1579 | 9..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:10:41 Download gff for
BO08084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9188017..9188265 | 680..928 | 99 | <- | Minus |
2R | 9188654..9189008 | 325..679 | 99 | <- | Minus |
2R | 9189067..9189220 | 171..324 | 100 | <- | Minus |
2R | 9191276..9191435 | 9..170 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:25 Download gff for
BO08084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5078781..5078940 | 9..170 | 97 | | Minus |
arm_2R | 5075522..5075770 | 680..928 | 99 | <- | Minus |
arm_2R | 5076159..5076513 | 325..679 | 99 | <- | Minus |
arm_2R | 5076572..5076725 | 171..324 | 100 | <- | Minus |
BO08084.complete Sequence
946 bp (946 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631043
> BO08084.complete
GAAGTTATCAGTCGACATGAATCCGATCAAGGCACAGTCAACGGGCAGTC
CCAAGAAATTCAACGTATTCGCACACGTCAAGTACGAGCATTTGGTTGCC
GGAGTATCCGGCGGAGTGGTGTCCACACTCATTCTACATCCCCTGGATTT
GATCAAGATTCGATTCGCAGTTAACGATGGCCGGACAGCTACGGTGCCGC
AATACCGGGGACTGAGCAGCGCCTTCACCACGATTTTCCGGCAAGAGGGC
TTCCGCGGACTCTACAAAGGCGTCACCCCCAATGTCTGGGGATCGGGCTC
CTCTTGGGGCCTGTACTTCATGTTCTACAACACCATTAAGACATTTATCC
AAGGAGGAAACACGACCATGCCATTGGGCCCCACAATGAACATGCTTGCA
GCTGCTGAGTCGGGAATTCTCACCCTGCTGCTGACCAACCCCATCTGGGT
GGTGAAGACGCGTCTCTGCCTGCAGTGCGATGCCGCGAGTAGTGCCGAGT
ACAGGGGCATGATCCACGCCTTGGGCCAGATATACAAGGAGGAGGGAATC
CGTGGCCTGTACCGCGGCTTTGTTCCCGGCATGTTGGGCGTCTCCCACGG
AGCCATCCAGTTCATGACCTACGAGGAGCTGAAGAACGCCTACAACGAAT
ATCGCAAACTGCCCATCGACACGAAGCTGGCCACCACCGAGTACTTGGCC
TTCGCGGCTGTCTCCAAGCTGATCGCAGCGGCGGCCACCTACCCGTACCA
GGTGGTCCGGGCACGGCTGCAGGACCACCATCACCGATACAACGGCACCT
GGGACTGCATCAAACAGACTTGGAGGTACGAGCGCATGCGAGGTTTCTAT
AAGGGCCTGGTGCCCTACCTGGTCCACGTCACGCCCAACATCTGCATGGT
CATGCTGATCTGGGAGAAGCTGACCAGCGCAAGCTTTCTAGACCAT
BO08084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8026-RB | 915 | CG8026-PB | 1..912 | 17..928 | 4560 | 100 | Plus |
CG8026-RD | 969 | CG8026-PD | 1..843 | 17..859 | 4065 | 98.8 | Plus |
CG8026-RC | 612 | CG8026-PC | 1..609 | 320..928 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45085-RA | 2926 | CG45085-RA | 668..1579 | 17..928 | 4560 | 100 | Plus |
CG8026-RB | 2926 | CG8026-RB | 668..1579 | 17..928 | 4560 | 100 | Plus |
CG45085-RB | 1941 | CG45085-RB | 668..1510 | 17..859 | 4065 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9188653..9189008 | 680..325 | 1780 | 100 | Minus |
2R | 25286936 | 2R | 9188017..9188266 | 928..679 | 1250 | 100 | Minus |
2R | 25286936 | 2R | 9189067..9189224 | 324..167 | 790 | 100 | Minus |
2R | 25286936 | 2R | 9191276..9191429 | 170..17 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:58:59 has no hits.
BO08084.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:20 Download gff for
BO08084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-RB | 1..915 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:30 Download gff for
BO08084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-RB | 661..1578 | 9..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:24 Download gff for
BO08084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-RB | 668..1579 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:20 Download gff for
BO08084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-RB | 661..1578 | 9..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:43 Download gff for
BO08084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8026-RB | 668..1579 | 17..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:43 Download gff for
BO08084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9188015..9188265 | 680..930 | 99 | <- | Minus |
2R | 9188654..9189008 | 325..679 | 100 | <- | Minus |
2R | 9189067..9189220 | 171..324 | 100 | <- | Minus |
2R | 9191276..9191429 | 17..170 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:24 Download gff for
BO08084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5075520..5075770 | 680..930 | 99 | <- | Minus |
arm_2R | 5076159..5076513 | 325..679 | 100 | <- | Minus |
arm_2R | 5076572..5076725 | 171..324 | 100 | <- | Minus |
arm_2R | 5078781..5078934 | 17..170 | 100 | | Minus |
BO08084.pep Sequence
Translation from 16 to 946
> BO08084.pep
MNPIKAQSTGSPKKFNVFAHVKYEHLVAGVSGGVVSTLILHPLDLIKIRF
AVNDGRTATVPQYRGLSSAFTTIFRQEGFRGLYKGVTPNVWGSGSSWGLY
FMFYNTIKTFIQGGNTTMPLGPTMNMLAAAESGILTLLLTNPIWVVKTRL
CLQCDAASSAEYRGMIHALGQIYKEEGIRGLYRGFVPGMLGVSHGAIQFM
TYEELKNAYNEYRKLPIDTKLATTEYLAFAAVSKLIAAAATYPYQVVRAR
LQDHHHRYNGTWDCIKQTWRYERMRGFYKGLVPYLVHVTPNICMVMLIWE
KLTSASFLDH
BO08084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8026-PB | 304 | CG8026-PB | 1..304 | 1..304 | 1612 | 100 | Plus |
CG8026-PD | 322 | CG8026-PD | 1..303 | 1..303 | 1493 | 93.4 | Plus |
CG8026-PC | 203 | CG8026-PC | 1..203 | 102..304 | 1081 | 100 | Plus |
Rim2-PC | 358 | CG18317-PC | 73..338 | 35..300 | 343 | 30.1 | Plus |
Rim2-PD | 272 | CG18317-PD | 7..252 | 55..300 | 338 | 30.5 | Plus |
CG8026-PC | 203 | CG8026-PC | 24..188 | 25..193 | 169 | 27.9 | Plus |