Clone Sequence Records
BO08085.3prime Sequence
908 bp (736 high quality bases) assembled on 2006-01-06
> BO08085.3prime
ATGGTCTAGAAAGCTTGCCCAGCGGATCTGATGCTTGTACTGCTCGTCCA
CCGCAATGCGCTTGATCGTCTCGTAACCTAGAATAATGCTGAATGAGAAG
GCTGCCGACTGCACCAGGCGGGCGGACAGTCCCTTGAAGAAGCAGTTCAG
CTTCTCCTCCTGCCACAGCTCCCGGAAGGCGACGCTCATCGAGTCCAAGC
GGTGGACCTGCAGACGGGCACGCACTATATCTAAAGGATTGGTTAGTATT
GTCGTTGTGAAGCCACCTAAACTGCCGGCCACGCACTGGATAAACAGATG
GGACACCCAAACGGGGCAGATGCGGAACAGTTCGTCCTGATAGAGATGAT
AGAAGGCCCACCACATGGCCGAATTCGGTACGTAGGCCATCAGGCTGGCG
GTGTAGCCGCGGTAGAAGCCCCGGAAGCCATCGCGCCGCATTATCTCCCT
GCCAATGTCCATGGAAATGTGCAGGCGACTGCGACCGGGCCATGACTTAA
TGCCCAGCGGATTGATATCGCCCTTGGAACCGGCATGGGCCGACATCCCG
AGCACCATGGCGTGCTGCGATATCACATCGAAAGGAACTATGATGGTCTG
GCCCACCAGCGAGGCGCAACCGCCGCCGGCGAGGGCCTTCATTCGATGCC
CAGCACCCAGATCGTTGAGCACATGGCGCACGCCCTCGTAGGTGCTTATG
TAAAAGACGCCGGACACTATTTGCACGGAGGAGATCCAGAAACCTCTATA
CAGACCGGGCACTCCCTCCGATCGGTAGATCTTCATGGCGCAATCCACCA
TGCCCTTGTACACATCGCTCTTGTGCTGCACCTGCAATTGCGTCTTGATC
ACGGTCAGCGGGAATAGGCAGCAGCGCACCCGAAACGAGCTGAGCATGGA
GAGCGGAA
BO08085.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5805-PA | 1020 | CG5805-RA | 128..1017 | 908..19 | 4400 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5805-RB | 2151 | CG5805-RB | 415..1304 | 908..19 | 4420 | 99.8 | Minus |
CG5805-RA | 2036 | CG5805-RA | 485..1374 | 908..19 | 4420 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24785973..24786545 | 336..908 | 2835 | 99.7 | Plus |
3R | 32079331 | 3R | 24785399..24785591 | 19..211 | 965 | 100 | Plus |
3R | 32079331 | 3R | 24785785..24785915 | 206..336 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:37:36 has no hits.
BO08085.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:30 Download gff for
BO08085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-PA | 130..1020 | 15..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:36 Download gff for
BO08085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-PA | 130..1020 | 15..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:38:26 Download gff for
BO08085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-RA | 485..1379 | 14..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:31 Download gff for
BO08085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-RA | 485..1379 | 14..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:31 Download gff for
BO08085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24785394..24785587 | 14..207 | 98 | <- | Plus |
3R | 24785787..24785914 | 208..335 | 100 | <- | Plus |
3R | 24785973..24786545 | 336..908 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:38:26 Download gff for
BO08085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20611116..20611309 | 14..207 | 98 | <- | Plus |
arm_3R | 20611509..20611636 | 208..335 | 100 | <- | Plus |
arm_3R | 20611695..20612267 | 336..908 | 99 | | Plus |
BO08085.5prime Sequence
893 bp (770 high quality bases) assembled on 2006-01-06
> BO08085.5prime
GAAGTTATCAGTCGACATGACGGAAAGCAGCAGTAGCACCAAATCCCGCC
TAGCGGTGGCGCCCACCGGAGTTGGAGGAGCAGCCGAGGGAGCCACATAC
ATACGCACCATCGAATGGGACATGATGAACAAGACCAAGTTCTTTCCGCT
CTCCATGCTCAGCTCGTTTTCGGTGCGCTGCTGCCTATTCCCGCTGACCG
TGATCAAGACGCAATTGCAGGTGCAGCACAAGAGCGATGTGTACAAGGGC
ATGGTGGATTGCGCCATGAAGATCTACCGATCGGAGGGAGTGCCCGGTCT
GTATAGAGGTTTCTGGATCTCCTCCGTGCAAATAGTGTCCGGCGTCTTTT
ACATAAGCACCTACGAGGGCGTGCGCCATGTGCTCAACGATCTGGGTGCT
GGGCATCGAATGAAGGCCCTCGCCGGCGGCGGTTGCGCCTCGCTGGTGGG
CCAGACCATCATAGTTCCTTTCGATGTGATATCGCAGCACGCCATGGTGC
TCGGGATGTCGGCCCATGCCGGTTCCAAGGGCGATATCAATCCGCTGGGC
ATTAAGTCATGGCCCGGTCGCAGTCGCCTGCACATTTCCATGGACATTGG
CAGGGAGATAATGCGGCGCGATGGCTTCCGGGGCTTCTACCGCGGCTACA
CCGCCAGCCTGATGGCCTACGTACCGAATTCGGCCATGTGGTGGGCCTTC
TATCATCTCTATCAGGACGAACTGTTCCGCATCTGCCCCGTTTGGGTGTC
CCATCTGTTTATCCAGTGCGTGGCCGGCAGTTTAGGTGGCTTCACAACGA
CAATACTAACCAATCCTTTAGATATAGTGCGTGCCCGTCTGCAGGTCCAC
CGCTTGGACTCGATGAGCGTCGCCTTCCGGGAGCTGTGGCAGG
BO08085.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5805-PA | 1020 | CG5805-RA | 1..877 | 17..893 | 4385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5805-RB | 2151 | CG5805-RB | 288..1164 | 17..893 | 4385 | 100 | Plus |
CG5805-RA | 2036 | CG5805-RA | 358..1234 | 17..893 | 4385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:41:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24785973..24786672 | 716..17 | 3500 | 100 | Minus |
3R | 32079331 | 3R | 24785785..24785915 | 846..716 | 655 | 100 | Minus |
3R | 32079331 | 3R | 24785539..24785591 | 893..841 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:41:33 has no hits.
BO08085.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:31 Download gff for
BO08085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-PA | 1..877 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:37 Download gff for
BO08085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-PA | 1..877 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:59:40 Download gff for
BO08085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-RA | 350..1234 | 6..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:07:40 Download gff for
BO08085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-RA | 350..1234 | 6..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:07:40 Download gff for
BO08085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24785539..24785587 | 845..893 | 100 | <- | Minus |
3R | 24785787..24785914 | 717..844 | 100 | <- | Minus |
3R | 24785973..24786680 | 6..716 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:59:40 Download gff for
BO08085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20611261..20611309 | 845..893 | 100 | <- | Minus |
arm_3R | 20611509..20611636 | 717..844 | 100 | <- | Minus |
arm_3R | 20611695..20612402 | 6..716 | 99 | | Minus |
BO08085.complete Sequence
1051 bp (1051 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631044
> BO08085.complete
GAAGTTATCAGTCGACATGACGGAAAGCAGCAGTAGCACCAAATCCCGCC
TAGCGGTGGCGCCCACCGGAGTTGGAGGAGCAGCCGAGGGAGCCACATAC
ATACGCACCATCGAATGGGACATGATGAACAAGACCAAGTTCTTTCCGCT
CTCCATGCTCAGCTCGTTTTCGGTGCGCTGCTGCCTATTCCCGCTGACCG
TGATCAAGACGCAATTGCAGGTGCAGCACAAGAGCGATGTGTACAAGGGC
ATGGTGGATTGCGCCATGAAGATCTACCGATCGGAGGGAGTGCCCGGTCT
GTATAGAGGTTTCTGGATCTCCTCCGTGCAAATAGTGTCCGGCGTCTTTT
ACATAAGCACCTACGAGGGCGTGCGCCATGTGCTCAACGATCTGGGTGCT
GGGCATCGAATGAAGGCCCTCGCCGGCGGCGGTTGCGCCTCGCTGGTGGG
CCAGACCATCATAGTTCCTTTCGATGTGATATCGCAGCACGCCATGGTGC
TCGGGATGTCGGCCCATGCCGGTTCCAAGGGCGATATCAATCCGCTGGGC
ATTAAGTCATGGCCCGGTCGCAGTCGCCTGCACATTTCCATGGACATTGG
CAGGGAGATAATGCGGCGCGATGGCTTCCGGGGCTTCTACCGCGGCTACA
CCGCCAGCCTGATGGCCTACGTACCGAATTCGGCCATGTGGTGGGCCTTC
TATCATCTCTATCAGGACGAACTGTTCCGCATCTGCCCCGTTTGGGTGTC
CCATCTGTTTATCCAGTGCGTGGCCGGCAGTTTAGGTGGCTTCACAACGA
CAATACTAACCAATCCTTTAGATATAGTGCGTGCCCGTCTGCAGGTCCAC
CGCTTGGACTCGATGAGCGTCGCCTTCCGGGAGCTGTGGCAGGAGGAGAA
GCTGAACTGCTTCTTCAAGGGACTGTCCGCCCGCCTGGTGCAGTCGGCAG
CCTTCTCATTCAGCATTATTCTAGGTTACGAGACGATCAAGCGCATTGCG
GTGGACGAGCAGTACAAGCATCAGATCCGCTGGGCAAGCTTTCTAGACCA
T
BO08085.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:29:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5805-RB | 1020 | CG5805-PB | 1..1017 | 17..1033 | 5085 | 100 | Plus |
CG5805-RA | 1020 | CG5805-PA | 1..1017 | 17..1033 | 5085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5805-RB | 2151 | CG5805-RB | 288..1304 | 17..1033 | 5085 | 100 | Plus |
CG5805-RA | 2036 | CG5805-RA | 358..1374 | 17..1033 | 5085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24785973..24786672 | 716..17 | 3500 | 100 | Minus |
3R | 32079331 | 3R | 24785399..24785591 | 1033..841 | 965 | 100 | Minus |
3R | 32079331 | 3R | 24785785..24785915 | 846..716 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:29:35 has no hits.
BO08085.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:22 Download gff for
BO08085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-RA | 1..1020 | 17..1037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:31 Download gff for
BO08085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-RA | 349..1378 | 6..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:36 Download gff for
BO08085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-RA | 358..1374 | 17..1035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:22 Download gff for
BO08085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-RA | 349..1378 | 6..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:52 Download gff for
BO08085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5805-RA | 358..1374 | 17..1035 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:52 Download gff for
BO08085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24785397..24785587 | 845..1035 | 98 | <- | Minus |
3R | 24785787..24785914 | 717..844 | 100 | <- | Minus |
3R | 24785973..24786672 | 17..716 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:36 Download gff for
BO08085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20611119..20611309 | 845..1035 | 98 | <- | Minus |
arm_3R | 20611509..20611636 | 717..844 | 100 | <- | Minus |
arm_3R | 20611695..20612394 | 17..716 | 100 | | Minus |
BO08085.pep Sequence
Translation from 16 to 1051
> BO08085.pep
MTESSSSTKSRLAVAPTGVGGAAEGATYIRTIEWDMMNKTKFFPLSMLSS
FSVRCCLFPLTVIKTQLQVQHKSDVYKGMVDCAMKIYRSEGVPGLYRGFW
ISSVQIVSGVFYISTYEGVRHVLNDLGAGHRMKALAGGGCASLVGQTIIV
PFDVISQHAMVLGMSAHAGSKGDINPLGIKSWPGRSRLHISMDIGREIMR
RDGFRGFYRGYTASLMAYVPNSAMWWAFYHLYQDELFRICPVWVSHLFIQ
CVAGSLGGFTTTILTNPLDIVRARLQVHRLDSMSVAFRELWQEEKLNCFF
KGLSARLVQSAAFSFSIILGYETIKRIAVDEQYKHQIRWASFLDH
BO08085.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5805-PB | 339 | CG5805-PB | 1..339 | 1..339 | 1779 | 100 | Plus |
CG5805-PA | 339 | CG5805-PA | 1..339 | 1..339 | 1779 | 100 | Plus |
aralar1-PB | 679 | CG2139-PB | 344..603 | 57..327 | 188 | 23.7 | Plus |
aralar1-PD | 682 | CG2139-PD | 347..606 | 57..327 | 188 | 23.7 | Plus |
aralar1-PA | 682 | CG2139-PA | 347..606 | 57..327 | 188 | 23.7 | Plus |
aralar1-PB | 679 | CG2139-PB | 333..518 | 138..337 | 157 | 27.2 | Plus |
aralar1-PD | 682 | CG2139-PD | 336..521 | 138..337 | 157 | 27.2 | Plus |