Clone BO08085 Report

Search the DGRC for BO08085

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:80
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG5805-RA
Protein status:BO08085.pep: validated full length
Sequenced Size:1051

Clone Sequence Records

BO08085.3prime Sequence

908 bp (736 high quality bases) assembled on 2006-01-06

> BO08085.3prime
ATGGTCTAGAAAGCTTGCCCAGCGGATCTGATGCTTGTACTGCTCGTCCA
CCGCAATGCGCTTGATCGTCTCGTAACCTAGAATAATGCTGAATGAGAAG
GCTGCCGACTGCACCAGGCGGGCGGACAGTCCCTTGAAGAAGCAGTTCAG
CTTCTCCTCCTGCCACAGCTCCCGGAAGGCGACGCTCATCGAGTCCAAGC
GGTGGACCTGCAGACGGGCACGCACTATATCTAAAGGATTGGTTAGTATT
GTCGTTGTGAAGCCACCTAAACTGCCGGCCACGCACTGGATAAACAGATG
GGACACCCAAACGGGGCAGATGCGGAACAGTTCGTCCTGATAGAGATGAT
AGAAGGCCCACCACATGGCCGAATTCGGTACGTAGGCCATCAGGCTGGCG
GTGTAGCCGCGGTAGAAGCCCCGGAAGCCATCGCGCCGCATTATCTCCCT
GCCAATGTCCATGGAAATGTGCAGGCGACTGCGACCGGGCCATGACTTAA
TGCCCAGCGGATTGATATCGCCCTTGGAACCGGCATGGGCCGACATCCCG
AGCACCATGGCGTGCTGCGATATCACATCGAAAGGAACTATGATGGTCTG
GCCCACCAGCGAGGCGCAACCGCCGCCGGCGAGGGCCTTCATTCGATGCC
CAGCACCCAGATCGTTGAGCACATGGCGCACGCCCTCGTAGGTGCTTATG
TAAAAGACGCCGGACACTATTTGCACGGAGGAGATCCAGAAACCTCTATA
CAGACCGGGCACTCCCTCCGATCGGTAGATCTTCATGGCGCAATCCACCA
TGCCCTTGTACACATCGCTCTTGTGCTGCACCTGCAATTGCGTCTTGATC
ACGGTCAGCGGGAATAGGCAGCAGCGCACCCGAAACGAGCTGAGCATGGA
GAGCGGAA

BO08085.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5805-PA 1020 CG5805-RA 128..1017 908..19 4400 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5805-RB 2151 CG5805-RB 415..1304 908..19 4420 99.8 Minus
CG5805-RA 2036 CG5805-RA 485..1374 908..19 4420 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24785973..24786545 336..908 2835 99.7 Plus
3R 32079331 3R 24785399..24785591 19..211 965 100 Plus
3R 32079331 3R 24785785..24785915 206..336 655 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:37:36 has no hits.

BO08085.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:30 Download gff for BO08085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5805-PA 130..1020 15..906 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:36 Download gff for BO08085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5805-PA 130..1020 15..906 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:38:26 Download gff for BO08085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 485..1379 14..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:31 Download gff for BO08085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 485..1379 14..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:31 Download gff for BO08085.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24785394..24785587 14..207 98 <- Plus
3R 24785787..24785914 208..335 100 <- Plus
3R 24785973..24786545 336..908 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:38:26 Download gff for BO08085.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20611116..20611309 14..207 98 <- Plus
arm_3R 20611509..20611636 208..335 100 <- Plus
arm_3R 20611695..20612267 336..908 99   Plus

BO08085.5prime Sequence

893 bp (770 high quality bases) assembled on 2006-01-06

> BO08085.5prime
GAAGTTATCAGTCGACATGACGGAAAGCAGCAGTAGCACCAAATCCCGCC
TAGCGGTGGCGCCCACCGGAGTTGGAGGAGCAGCCGAGGGAGCCACATAC
ATACGCACCATCGAATGGGACATGATGAACAAGACCAAGTTCTTTCCGCT
CTCCATGCTCAGCTCGTTTTCGGTGCGCTGCTGCCTATTCCCGCTGACCG
TGATCAAGACGCAATTGCAGGTGCAGCACAAGAGCGATGTGTACAAGGGC
ATGGTGGATTGCGCCATGAAGATCTACCGATCGGAGGGAGTGCCCGGTCT
GTATAGAGGTTTCTGGATCTCCTCCGTGCAAATAGTGTCCGGCGTCTTTT
ACATAAGCACCTACGAGGGCGTGCGCCATGTGCTCAACGATCTGGGTGCT
GGGCATCGAATGAAGGCCCTCGCCGGCGGCGGTTGCGCCTCGCTGGTGGG
CCAGACCATCATAGTTCCTTTCGATGTGATATCGCAGCACGCCATGGTGC
TCGGGATGTCGGCCCATGCCGGTTCCAAGGGCGATATCAATCCGCTGGGC
ATTAAGTCATGGCCCGGTCGCAGTCGCCTGCACATTTCCATGGACATTGG
CAGGGAGATAATGCGGCGCGATGGCTTCCGGGGCTTCTACCGCGGCTACA
CCGCCAGCCTGATGGCCTACGTACCGAATTCGGCCATGTGGTGGGCCTTC
TATCATCTCTATCAGGACGAACTGTTCCGCATCTGCCCCGTTTGGGTGTC
CCATCTGTTTATCCAGTGCGTGGCCGGCAGTTTAGGTGGCTTCACAACGA
CAATACTAACCAATCCTTTAGATATAGTGCGTGCCCGTCTGCAGGTCCAC
CGCTTGGACTCGATGAGCGTCGCCTTCCGGGAGCTGTGGCAGG

BO08085.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5805-PA 1020 CG5805-RA 1..877 17..893 4385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5805-RB 2151 CG5805-RB 288..1164 17..893 4385 100 Plus
CG5805-RA 2036 CG5805-RA 358..1234 17..893 4385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24785973..24786672 716..17 3500 100 Minus
3R 32079331 3R 24785785..24785915 846..716 655 100 Minus
3R 32079331 3R 24785539..24785591 893..841 265 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:41:33 has no hits.

BO08085.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:31 Download gff for BO08085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5805-PA 1..877 17..893 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:37 Download gff for BO08085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5805-PA 1..877 17..893 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:59:40 Download gff for BO08085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 350..1234 6..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:07:40 Download gff for BO08085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 350..1234 6..893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:07:40 Download gff for BO08085.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24785539..24785587 845..893 100 <- Minus
3R 24785787..24785914 717..844 100 <- Minus
3R 24785973..24786680 6..716 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:59:40 Download gff for BO08085.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20611261..20611309 845..893 100 <- Minus
arm_3R 20611509..20611636 717..844 100 <- Minus
arm_3R 20611695..20612402 6..716 99   Minus

BO08085.complete Sequence

1051 bp (1051 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631044

> BO08085.complete
GAAGTTATCAGTCGACATGACGGAAAGCAGCAGTAGCACCAAATCCCGCC
TAGCGGTGGCGCCCACCGGAGTTGGAGGAGCAGCCGAGGGAGCCACATAC
ATACGCACCATCGAATGGGACATGATGAACAAGACCAAGTTCTTTCCGCT
CTCCATGCTCAGCTCGTTTTCGGTGCGCTGCTGCCTATTCCCGCTGACCG
TGATCAAGACGCAATTGCAGGTGCAGCACAAGAGCGATGTGTACAAGGGC
ATGGTGGATTGCGCCATGAAGATCTACCGATCGGAGGGAGTGCCCGGTCT
GTATAGAGGTTTCTGGATCTCCTCCGTGCAAATAGTGTCCGGCGTCTTTT
ACATAAGCACCTACGAGGGCGTGCGCCATGTGCTCAACGATCTGGGTGCT
GGGCATCGAATGAAGGCCCTCGCCGGCGGCGGTTGCGCCTCGCTGGTGGG
CCAGACCATCATAGTTCCTTTCGATGTGATATCGCAGCACGCCATGGTGC
TCGGGATGTCGGCCCATGCCGGTTCCAAGGGCGATATCAATCCGCTGGGC
ATTAAGTCATGGCCCGGTCGCAGTCGCCTGCACATTTCCATGGACATTGG
CAGGGAGATAATGCGGCGCGATGGCTTCCGGGGCTTCTACCGCGGCTACA
CCGCCAGCCTGATGGCCTACGTACCGAATTCGGCCATGTGGTGGGCCTTC
TATCATCTCTATCAGGACGAACTGTTCCGCATCTGCCCCGTTTGGGTGTC
CCATCTGTTTATCCAGTGCGTGGCCGGCAGTTTAGGTGGCTTCACAACGA
CAATACTAACCAATCCTTTAGATATAGTGCGTGCCCGTCTGCAGGTCCAC
CGCTTGGACTCGATGAGCGTCGCCTTCCGGGAGCTGTGGCAGGAGGAGAA
GCTGAACTGCTTCTTCAAGGGACTGTCCGCCCGCCTGGTGCAGTCGGCAG
CCTTCTCATTCAGCATTATTCTAGGTTACGAGACGATCAAGCGCATTGCG
GTGGACGAGCAGTACAAGCATCAGATCCGCTGGGCAAGCTTTCTAGACCA
T

BO08085.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5805-RB 1020 CG5805-PB 1..1017 17..1033 5085 100 Plus
CG5805-RA 1020 CG5805-PA 1..1017 17..1033 5085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5805-RB 2151 CG5805-RB 288..1304 17..1033 5085 100 Plus
CG5805-RA 2036 CG5805-RA 358..1374 17..1033 5085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24785973..24786672 716..17 3500 100 Minus
3R 32079331 3R 24785399..24785591 1033..841 965 100 Minus
3R 32079331 3R 24785785..24785915 846..716 655 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:29:35 has no hits.

BO08085.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:22 Download gff for BO08085.complete
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 1..1020 17..1037 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:31 Download gff for BO08085.complete
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 349..1378 6..1038 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:36 Download gff for BO08085.complete
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 358..1374 17..1035 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:22 Download gff for BO08085.complete
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 349..1378 6..1038 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:52 Download gff for BO08085.complete
Subject Subject Range Query Range Percent Splice Strand
CG5805-RA 358..1374 17..1035 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:52 Download gff for BO08085.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24785397..24785587 845..1035 98 <- Minus
3R 24785787..24785914 717..844 100 <- Minus
3R 24785973..24786672 17..716 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:36 Download gff for BO08085.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20611119..20611309 845..1035 98 <- Minus
arm_3R 20611509..20611636 717..844 100 <- Minus
arm_3R 20611695..20612394 17..716 100   Minus

BO08085.pep Sequence

Translation from 16 to 1051

> BO08085.pep
MTESSSSTKSRLAVAPTGVGGAAEGATYIRTIEWDMMNKTKFFPLSMLSS
FSVRCCLFPLTVIKTQLQVQHKSDVYKGMVDCAMKIYRSEGVPGLYRGFW
ISSVQIVSGVFYISTYEGVRHVLNDLGAGHRMKALAGGGCASLVGQTIIV
PFDVISQHAMVLGMSAHAGSKGDINPLGIKSWPGRSRLHISMDIGREIMR
RDGFRGFYRGYTASLMAYVPNSAMWWAFYHLYQDELFRICPVWVSHLFIQ
CVAGSLGGFTTTILTNPLDIVRARLQVHRLDSMSVAFRELWQEEKLNCFF
KGLSARLVQSAAFSFSIILGYETIKRIAVDEQYKHQIRWASFLDH

BO08085.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5805-PB 339 CG5805-PB 1..339 1..339 1779 100 Plus
CG5805-PA 339 CG5805-PA 1..339 1..339 1779 100 Plus
aralar1-PB 679 CG2139-PB 344..603 57..327 188 23.7 Plus
aralar1-PD 682 CG2139-PD 347..606 57..327 188 23.7 Plus
aralar1-PA 682 CG2139-PA 347..606 57..327 188 23.7 Plus
aralar1-PB 679 CG2139-PB 333..518 138..337 157 27.2 Plus
aralar1-PD 682 CG2139-PD 336..521 138..337 157 27.2 Plus