Clone BO08093 Report

Search the DGRC for BO08093

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:80
Well:93
Vector:pDNR-Dual
Associated Gene/Transcriptneo-RA
Protein status:BO08093.pep: validated full length
Sequenced Size:2266

Clone Sequence Records

BO08093.3prime Sequence

919 bp (839 high quality bases) assembled on 2006-01-06

> BO08093.3prime
ATGGTCTAGAAAGCTTGCGTAGGAGTGCTGATACGGCTGCAGCTTCTGCC
GGCGTTGGTAGCAGTACGTCCAGATCGCGATCACGGCCAGCTGAGTTAGC
AGGAAAATGGTGGCAGCCGTGATAAGACCAATGGCGTTAACGCAGAATCC
GTGACCCTCCTCGTTGGCAGTGAATGTGGTCTCGTTACCGTCGTAAAAGT
CTCCGCTTTCCTGCTTATCTTGCTTGAATCCGAACTTATCCGTAATCTGA
ATGGACTGAACCAGCAGCATGTCGCTGGGGGCGGACTTCTTTGAAGTGTC
GATGTCGCGACGTGGTCTCGGATGATCATCTGTGGTGTTGAGCGATCTGC
GTTTCCGGCCATAGGACAACAAGGACCTGAACTCCCCGCTGGTGTCCTCC
TGCTCGCACTGGACGGGCTCGCAGCTGGGCATGCAGGGCGTGACCAAGGC
GCGGAACTGGACCACCTCGCTGGAGGGGAACTTGAAGGCATCGAAATTGG
AGAGCAGCATCTTGCCGGAAACCGATCCCTTGTAAATGGGACCCATTATG
AAGTGGTCGGTTGGGCAGCCATTCGAATCGATTAAGGTAATTTCCGAGTT
ATCCACGCCATCCATGGCAACCAGCTCCCGAATGAAGATCTCGTAGGGGC
TCTGCTCGTCGACGATCTCGAACTTGAGGGCCAGCGGGTCGCCCACCTCG
GCGGAGCGCATCATGTCCGAGCCGTCGCGCGACGTAATCCGCATGATGAC
GTTGGGCGACTCCACAATTACCTCCTCGGACAGGGCCGGCATGATGTCGC
CGCGCACATCCAGATCGACGCCATTGCTCACCGACTTGTTGGTCAGGTCG
TACTGACAGGGCCAGGCCAAGCCCAGATCGGAGGATGTCANCATCATGTC
GTGGTGCTGGATAATTATA

BO08093.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7802-PA 2235 CG7802-RA 1332..2232 919..19 4411 99.5 Minus
CG7802-PB 2235 CG7802-RB 1332..2232 919..19 4411 99.5 Minus
CG1499-PA 2502 CG1499-RA 1739..1823 515..431 150 87 Minus
CG1499-PB 2502 CG1499-RB 1739..1823 515..431 150 87 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
neo-RB 3005 CG7802-RB 1532..2432 919..19 4449 99.6 Minus
neo-RA 2977 CG7802-RA 1504..2404 919..19 4449 99.6 Minus
nyo-RD 3681 CG1499-RD 2038..2387 702..356 415 76 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29824111..29824700 919..330 2894 99.3 Minus
3R 32079331 3R 29824769..29824976 334..127 1040 100 Minus
3R 32079331 3R 29825117..29825227 129..19 555 100 Minus
3R 32079331 3R 31504594..31505087 912..419 404 72.1 Minus
3R 32079331 3R 31561411..31561701 702..412 390 75.6 Minus
Blast to na_te.dros performed on 2015-02-10 16:43:27 has no hits.

BO08093.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:44 Download gff for BO08093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7802-PB 1333..2235 15..918 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:55 Download gff for BO08093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7802-PB 1333..2235 15..918 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:11:40 Download gff for BO08093.3prime
Subject Subject Range Query Range Percent Splice Strand
neo-RA 1505..2409 13..918 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:21 Download gff for BO08093.3prime
Subject Subject Range Query Range Percent Splice Strand
neo-RA 1505..2409 13..918 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:21 Download gff for BO08093.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29824112..29824700 330..918 99 -> Minus
3R 29824774..29824974 129..329 100 -> Minus
3R 29825118..29825232 13..128 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:11:40 Download gff for BO08093.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25649834..25650422 330..918 99 -> Minus
arm_3R 25650496..25650696 129..329 100 -> Minus
arm_3R 25650840..25650954 13..128 98   Minus

BO08093.5prime Sequence

900 bp (814 high quality bases) assembled on 2006-01-06

> BO08093.5prime
GAAGTTATCAGTCGACATGGCCAAGATAAACCTACTGCGACACCTCTTCC
TGGCCCTAATGCTGTACAGTGCGGCCACGGCCAAGGAGCACCTGCGAATC
CGAAGACAGGCTGCGGAATCGGTGACTGCCGCAGCTCCGAATGCCAGTAA
GGTGATGGCCTCCGAGGAGATTAAGGACAAGACAGAGTGGCCCGGCGCCA
AAGAAACCTCCACCGAAATCAATAGGACTGAGAGGCCCGTAGAAAACGTG
GAGACCCGCAACTCGGGCTTCGACTTGCCGGCCGCCTCGGATTTGTCCAG
CTCTCTGGGTTCCGAGGAGGATAGCATCTACTACGACAATGCTCCCGTGG
ACTGCAATCCCGAGCTGGTGGGCTTTGAAATTGTGACAGGATACGTCTTC
TCGGCGCCCGAAAAGCTGATGGACTCCCAGCCGGGCACGCTAATGCTCAC
TGATTGCTTGGACACCTGTAGGAAGAACAAAACCTGCCAGTCAGTGAACT
ACGAGACCGGGCTTTGCGTGCTCTTCTCGGCACATGCTGATCAATTACCG
GGTGCCCTGACAAAGTCGCAGTTCCCCGTATTCACTATCTATGCCCAAAA
ATCATGCCTGGCCGTGAAGCCCTGCTCCCGAGCCTGGTACGTCGATCGTG
TTCAGAACTACAAGCTCAAGACGGAAGTTAAGCGTACCGTGTCGGTGGCG
TCAAGACGCGAGTGCTTTGAACTCTGCCTCGGCGAANACGACTTCACATG
CAGATCTGCCAACTACGATCGCACCTCTGGAGCTTGCGAGCTGAGCGAAC
TGGATCGCCTGACTCTGGCCGGCTCCCAGGCCTTCCAGGTGAACGATGGG
TCGGATTACCCTTGAAATCACTGTGTCGATGAACCCAAACAGCTCTGCGA

BO08093.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7802-PA 2235 CG7802-RA 1..844 17..860 4201 99.8 Plus
CG7802-PB 2235 CG7802-RB 1..844 17..860 4201 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
neo-RB 3005 CG7802-RB 201..1084 17..900 4334 99.4 Plus
neo-RA 2977 CG7802-RA 173..1056 17..900 4334 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29822381..29822754 17..390 1870 100 Plus
3R 32079331 3R 29823039..29823241 551..753 1004 99.5 Plus
3R 32079331 3R 29822819..29822982 390..553 820 100 Plus
3R 32079331 3R 29823373..29823521 752..900 670 96.6 Plus
Blast to na_te.dros performed on 2015-02-10 16:50:02 has no hits.

BO08093.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:45 Download gff for BO08093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7802-PB 1..883 17..899 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:57 Download gff for BO08093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7802-PB 1..883 17..899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:11:44 Download gff for BO08093.5prime
Subject Subject Range Query Range Percent Splice Strand
neo-RA 173..1055 17..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:08 Download gff for BO08093.5prime
Subject Subject Range Query Range Percent Splice Strand
neo-RA 173..1055 17..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:08 Download gff for BO08093.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29822381..29822754 17..390 100 -> Plus
3R 29822820..29822980 391..551 100 -> Plus
3R 29823040..29823241 552..753 99 -> Plus
3R 29823375..29823520 754..899 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:11:44 Download gff for BO08093.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25649097..25649242 754..899 97   Plus
arm_3R 25648103..25648476 17..390 100 -> Plus
arm_3R 25648542..25648702 391..551 100 -> Plus
arm_3R 25648762..25648963 552..753 99 -> Plus

BO08093.complete Sequence

2266 bp (2266 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631047

> BO08093.complete
GAAGTTATCAGTCGACATGGCCAAGATAAACCTACTGCGACACCTCTTCC
TGGCCCTAATGCTGTACAGTGCGGCCACGGCCAAGGAGCACCTGCGAATC
CGAAGACAGGCTGCGGAATCGGTGACTGCCGCAGCTCCGAATGCCAGTAA
GGTGATGGCCTCCGAGGAGATTAAGGACAAGACAGAGTGGCCCGGCGCCA
AAGAAACCTCCACCGAAATCAATAGGACTGAGAGGCCCGTAGAAAACGTG
GAGACCCGCAACTCGGGCTTCGACTTGCCGGCCGCCTCGGATTTGTCCAG
CTCTCTGGGTTCCGAGGAGGATAGCATCTACTACGACAATGCTCCCGTGG
ACTGCAATCCCGAGCTGGTGGGCTTTGAAATTGTGACAGGATACGTCTTC
TCGGCGCCCGAAAAGCTGATGGACTCCCAGCCGGGCACGCTAATGCTCAC
TGATTGCTTGGACACCTGTAGGAAGAACAAAACCTGCCAGTCAGTGAACT
ACGAGACCGGGCTTTGCGTGCTCTTCTCGGCACATGCTGATCAATTACCG
GGTGCCCTGACAAAGTCGCAGTTCCCCGTATTCACTATCTATGCCCAAAA
ATCATGCCTGGCCGTGAAGCCCTGCTCCCGAGCCTGGTACGTCGATCGTG
TTCAGAACTACAAGCTCAAGACGGAAGTTAAGCGTACCGTGTCGGTGGCG
TCAAGACGCGAGTGCTTTGAACTCTGCCTCGGCGAAAACGACTTCACATG
CAGATCTGCCAACTACGATCGCACCTCTGGAGCTTGCGAGCTGAGCGAAC
TGGATCGCCTGACTCTGGCCGGCTCCCAGGCCTTCCAGGTGAACGATGGG
TCGGATTACCTTGAAAATCACTGTGTCGATGAACCCAACAAGCTCTGCGA
ATTCAAACGTCTACCTGGTCGCATACTGAAGACGGTGGACTCGGTTTACC
AAGAAGTGAGCAGCATTGACGAGTGCCGGGAACTGTGCCTCAACTCGCCA
TATAGGTGCCATTCGTACGACTACAACGACACGGGTGACATGGTGTGTAG
ATTATCCCATCACAGTCGTGCCACCTTGGCGGATGTGCAGGAACCCTTCC
TGGAGGTGCCCGAGGCGTCGACCTATGAACTGACTTCCTGCTACAATGTG
ACCATCGAGTGCGGCGGCGGGGACATGCTGGCACGCATCCGCACCTCCAA
GCTCTTCAACGGCAAGGTGTACGCCAAGGGATCGCCCAAGTCCTGCTCGG
TGGACGTGAAGAGCGCGCTGGACTTCGAGCTGCGCATGAACTACCACGAT
CTGGAGTGCAATGTGCGCCAGAGCACCGCCGGGCGCTATGTGAACGATAT
AATTATCCAGCACCACGACATGATTGTGACATCCTCCGATCTGGGCTTGG
CCTTGGCCTGTCAGTACGACCTGACCAACAAGTCGGTGAGCAATGGCGTC
GATCTGGATGTGCGCGGCGACATCATGCCGGCCCTGTCCGAGGAGGTAAT
TGTGGAGTCGCCCAACGTCATCATGCGGATTACGTCGCGCGACGGCTCGG
ACATGATGCGCTCCGCCGAGGTGGGCGACCCGCTGGCCCTCAAGTTCGAG
ATCGTCGACGAGCAGAGCCCCTACGAGATCTTCATTCGGGAGCTGGTTGC
CATGGATGGCGTGGATAACTCGGAAATTACCTTAATCGATTCGAATGGCT
GCCCAACCGACCACTTCATAATGGGTCCCATTTACAAGGGATCGGTTTCC
GGCAAGATGCTGCTCTCCAATTTCGATGCCTTCAAGTTCCCCTCCAGCGA
GGTGGTCCAGTTCCGCGCCTTGGTCACGCCCTGCATGCCCAGCTGCGAGC
CCGTCCAGTGCGAGCAGGAGGACACCAGCGGGGAGTTCAGGTCCTTGTTG
TCCTATGGCCGGAAACGCAGATCGCTCAACACCACAGATGATCATCCGAG
ACCACGTCGCGACATCGACACTTCAAAGAAGTCCGCCCCCAGCGACATGC
TGCTGGTTCAGTCCATTCAGATTACGGATAAGTTCGGATTCAAGCAAGAT
AAGCAGGAAAGCGGAGACTTTTACGACGGTAACGAGACCACATTCACTGC
CAACGAGGAGGGTCACGGATTCTGCGTTAACGCCATTGGTCTTATCACGG
CTGCCACCATTTTCCTGCTAACTCAGCTGGCCGTGATCGCGATCTGGACG
TACTGCTACCAACGCCGGCAGAAGCTGCAGCCGTATCAGCACTCCTACGC
AAGCTTTCTAGACCAT

BO08093.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
neo-RB 2235 CG7802-PB 1..2232 17..2248 11160 100 Plus
neo-RA 2235 CG7802-PA 1..2232 17..2248 11160 100 Plus
nyo-RD 2418 CG1499-PD 913..1842 926..1855 1110 74.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
neo-RB 3005 CG7802-RB 201..2432 17..2248 11160 100 Plus
neo-RA 2977 CG7802-RA 173..2404 17..2248 11160 100 Plus
nyo-RD 3681 CG1499-RD 1399..2328 926..1855 1110 74.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29823767..29824700 1004..1937 4670 100 Plus
3R 32079331 3R 29822381..29822754 17..390 1870 100 Plus
3R 32079331 3R 29823373..29823628 752..1007 1280 100 Plus
3R 32079331 3R 29824769..29824976 1933..2140 1040 100 Plus
3R 32079331 3R 29823039..29823241 551..753 1015 100 Plus
3R 32079331 3R 31560853..31561701 1007..1855 945 74.1 Plus
3R 32079331 3R 29822819..29822982 390..553 820 100 Plus
3R 32079331 3R 31504109..31505087 870..1848 725 71.6 Plus
3R 32079331 3R 29825117..29825227 2138..2248 555 100 Plus
3R 32079331 3R 31560706..31560787 926..1007 185 81.7 Plus
Blast to na_te.dros performed 2014-11-27 15:15:41
Subject Length Description Subject Range Query Range Score Percent Strand
diver2 4917 diver2 DIVER2 4917bp 1245..1307 1207..1145 126 66.7 Minus

BO08093.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:25 Download gff for BO08093.complete
Subject Subject Range Query Range Percent Splice Strand
CG7802-RB 1..2235 17..2252 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:59 Download gff for BO08093.complete
Subject Subject Range Query Range Percent Splice Strand
CG7802-RA 192..2428 17..2254 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:20 Download gff for BO08093.complete
Subject Subject Range Query Range Percent Splice Strand
neo-RA 173..2404 17..2250 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:25 Download gff for BO08093.complete
Subject Subject Range Query Range Percent Splice Strand
CG7802-RB 220..2456 17..2254 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:34 Download gff for BO08093.complete
Subject Subject Range Query Range Percent Splice Strand
neo-RA 173..2404 17..2250 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:34 Download gff for BO08093.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29824774..29824974 1938..2138 100 -> Plus
3R 29825118..29825227 2139..2250 98   Plus
3R 29822381..29822754 17..390 100 -> Plus
3R 29822820..29822980 391..551 100 -> Plus
3R 29823040..29823241 552..753 100 -> Plus
3R 29823375..29823626 754..1005 100 -> Plus
3R 29823769..29824700 1006..1937 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:20 Download gff for BO08093.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25648103..25648476 17..390 100 -> Plus
arm_3R 25648542..25648702 391..551 100 -> Plus
arm_3R 25648762..25648963 552..753 100 -> Plus
arm_3R 25649097..25649348 754..1005 100 -> Plus
arm_3R 25649491..25650422 1006..1937 100 -> Plus
arm_3R 25650496..25650696 1938..2138 100 -> Plus
arm_3R 25650840..25650949 2139..2250 98   Plus

BO08093.pep Sequence

Translation from 16 to 2266

> BO08093.pep
MAKINLLRHLFLALMLYSAATAKEHLRIRRQAAESVTAAAPNASKVMASE
EIKDKTEWPGAKETSTEINRTERPVENVETRNSGFDLPAASDLSSSLGSE
EDSIYYDNAPVDCNPELVGFEIVTGYVFSAPEKLMDSQPGTLMLTDCLDT
CRKNKTCQSVNYETGLCVLFSAHADQLPGALTKSQFPVFTIYAQKSCLAV
KPCSRAWYVDRVQNYKLKTEVKRTVSVASRRECFELCLGENDFTCRSANY
DRTSGACELSELDRLTLAGSQAFQVNDGSDYLENHCVDEPNKLCEFKRLP
GRILKTVDSVYQEVSSIDECRELCLNSPYRCHSYDYNDTGDMVCRLSHHS
RATLADVQEPFLEVPEASTYELTSCYNVTIECGGGDMLARIRTSKLFNGK
VYAKGSPKSCSVDVKSALDFELRMNYHDLECNVRQSTAGRYVNDIIIQHH
DMIVTSSDLGLALACQYDLTNKSVSNGVDLDVRGDIMPALSEEVIVESPN
VIMRITSRDGSDMMRSAEVGDPLALKFEIVDEQSPYEIFIRELVAMDGVD
NSEITLIDSNGCPTDHFIMGPIYKGSVSGKMLLSNFDAFKFPSSEVVQFR
ALVTPCMPSCEPVQCEQEDTSGEFRSLLSYGRKRRSLNTTDDHPRPRRDI
DTSKKSAPSDMLLVQSIQITDKFGFKQDKQESGDFYDGNETTFTANEEGH
GFCVNAIGLITAATIFLLTQLAVIAIWTYCYQRRQKLQPYQHSYASFLDH

BO08093.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
neo-PB 744 CG7802-PB 1..744 1..744 3893 100 Plus
neo-PA 744 CG7802-PA 1..744 1..744 3893 100 Plus
nyo-PD 805 CG1499-PD 39..749 29..742 2215 59.7 Plus
nyo-PC 805 CG1499-PC 39..749 29..742 2215 59.7 Plus
mey-PB 774 CG12063-PB 138..769 112..733 2104 61.7 Plus