Clone BO08094 Report

Search the DGRC for BO08094

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:80
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptnAcRalpha-96Ab-RA
Protein status:BO08094.pep: validated full length
Sequenced Size:1762

Clone Sequence Records

BO08094.3prime Sequence

913 bp (865 high quality bases) assembled on 2006-01-06

> BO08094.3prime
ATGGTCTAGAAAGCTTGCATTCTTCTTCTCGGTTAGATTGTAGATTTGCT
TGGCAACATCGGATAGCTGAACATCAATGGCCTTGGTATCGTCATATAGC
GACGGAGCCTCGCCTAGGATCACAAATGTGCCCACCAAGGATGCGATCAT
AAAGAGCCAGAGGAATAGGCGATCCATGACCATGGCCACAAAGCCCCAGT
CCTGATCTTCCGCATTGAACTCGTCCTGCCGCTGCATGTGGTGCTGTATG
AACATGACGTTGTGGATGGCCTTTTCCAGCTCGAAAGGATACTTTTTGCG
TGCGGCCACATCGCTCAAAGAGTCGTCCAATCCGGATAGCACCGATGGCA
GTCCGTTGTAGCCGCTCAGGGTGCTCAGTCCGCCGCCCAAAGCCCCCACC
AAGCCGCTGAATCTGTTTGTGGCCGTGGTCACGTGCATGCCATTGCACCC
ACCAGCACCCACACGACCTTGCATCCGCCGCAGGGAGTCTGGACTGGAGC
CGCCCGAGTTCATTTGCATCTCGTCCATCAGCGCCTGTCCGAACTTGGTC
TTGCTGAACTTGAGGCCGTAGTTGATCTTGTTGGCCGCCAGGTCACGCAG
CAGGTCCTTGGGCACACGCATCAGCAGGAGTTTCGGCAATCTCTTGATGA
AGAAGGACCTAATCCAGGGTCGCATCTTGTGCGTACTCGGCTTCCGGTAG
TGTATGTTTAGTATGATAATCGTGATGACAACACTCAGGCCAACCAGCAA
CATGGTGAACAGTAGATATTTTCCCAGTAGCGGCAATGCCAGTGAAGTCG
ATGGTATAATCTCCGATATGAGCAGGAAGAACATGGTTTGCGACAGCAGG
ATGCTGATGCACAGAGCAATCTTCTCGCCAGAATCGGCGGGCAGGTAAAA
GACCAGCACCGAA

BO08094.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG6844-PA 1731 nAcRalpha-96Ab-RA 834..1728 913..19 4475 100 Minus
CG6844-PB 1731 nAcRalpha-96Ab-RB 834..1728 913..19 4475 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
nAChRalpha2-RB 2319 CG6844-RB 1287..2181 913..19 4475 100 Minus
nAChRalpha2-RA 2387 CG6844-RA 1355..2249 913..19 4475 100 Minus
nAChRalpha1-RC 11027 CG5610-RC 2258..2421 906..743 325 79.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24488866..24489366 913..413 2505 100 Minus
3R 32079331 3R 24489595..24489801 416..210 1035 100 Minus
3R 32079331 3R 24490817..24491009 211..19 965 100 Minus
3R 32079331 3R 24405017..24405180 743..906 325 79.9 Plus
Blast to na_te.dros performed on 2015-02-12 10:10:20 has no hits.

BO08094.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:46 Download gff for BO08094.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6844-PA 836..1731 15..911 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:58 Download gff for BO08094.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6844-PB 836..1731 15..911 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:29 Download gff for BO08094.3prime
Subject Subject Range Query Range Percent Splice Strand
nAcRalpha-96Ab-RA 1355..2255 11..913 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:37 Download gff for BO08094.3prime
Subject Subject Range Query Range Percent Splice Strand
nAChRalpha2-RA 1355..2255 11..913 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:37 Download gff for BO08094.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24488866..24489366 413..913 100 -> Minus
3R 24489599..24489800 211..412 100 -> Minus
3R 24490818..24491015 11..210 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:29 Download gff for BO08094.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20314588..20315088 413..913 100 -> Minus
arm_3R 20315321..20315522 211..412 100 -> Minus
arm_3R 20316540..20316737 11..210 98   Minus

BO08094.5prime Sequence

887 bp (832 high quality bases) assembled on 2006-01-06

> BO08094.5prime
GAAGTTATCAGTCGACATGGCTCCTGGCTGCTGCACCACACGACCCCGCC
CCATCGCCCTGCTCGCTCACATCTGGCGCCACTGCAAGCCACTCTGCCTG
CTCCTGGTGCTCCTGCTCCTCTGCGAAACCGTTCAGGCGAATCCCGATGC
CAAGCGACTCTATGACGATCTGCTAAGCAACTACAATCGCCTCATCCGCC
CTGTGAGCAATAATACGGACACGGTGTTGGTCAAATTGGGCCTACGGCTC
TCCCAACTCATCGATTTGAATCTCAAAGATCAAATTCTAACCACCAACGT
GTGGCTGGAGCACGAATGGCAGGATCATAAATTCAAGTGGGATCCCTCGG
AGTATGGCGGCGTCACAGAGCTTTATGTGCCATCCGAGCACATCTGGCTG
CCCGACATCGTGCTCTACAACAATGCCGATGGCGAGTACGTGGTCACCAC
CATGACGAAGGCCATCCTCCACTATACCGGCAAAGTGGTCTGGACTCCGC
CGGCCATCTTCAAGTCCAGCTGTGAGATTGATGTGCGCTACTTTCCCTTC
GATCAGCAGACCTGCTTCATGAAGTTCGGCTCGTGGACCTACGACGGTGA
TCAGATCGATTTGAAGCACATCAGCCAGAAAAACGACAAGGACAACAAGG
TGGAGATAGGCATCGACCTGCGTGAGTACTATCCCAGTGTGGAGTGGGAC
ATTCTCGGCGTTCCGGCTGAGCGGCACGAGAAGTACTATCCCTGCTGTGC
CGAACCGTATCCGGATATCTTCTTCAACATCACCCTGAGGCGAAAGACTC
TCTTCTACACGGTTAACCTGATTATTCCATGTGTGGGCATCTCGTATCTT
TCGGTGCTGGTCTTTTACCTGCCCCGCGATTCTGGGC

BO08094.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG6844-PA 1731 nAcRalpha-96Ab-RA 1..869 17..885 4295 99.7 Plus
CG6844-PB 1731 nAcRalpha-96Ab-RB 1..869 17..885 4295 99.7 Plus
CG11348-PA 1566 nAcRbeta-64B-RA 471..523 538..590 165 92.4 Plus
CG5610-PA 1704 nAcRalpha-96Aa-RA 70..122 146..198 165 92.4 Plus
CG2302-PA 2352 nAcRalpha-7E-RA 466..507 539..580 135 92.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
nAChRalpha2-RB 2319 CG6844-RB 453..1322 16..885 4320 99.8 Plus
nAChRalpha2-RA 2387 CG6844-RA 521..1390 16..885 4320 99.8 Plus
nAChRalpha1-RC 11027 CG5610-RC 1540..2286 136..885 935 76 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24485948..24486200 16..268 1265 100 Plus
3R 32079331 3R 24487423..24487603 424..604 905 100 Plus
3R 32079331 3R 24488449..24488611 602..764 815 100 Plus
3R 32079331 3R 24487130..24487285 268..423 780 100 Plus
3R 32079331 3R 24488780..24488901 764..885 580 98.4 Plus
3R 32079331 3R 24405152..24405378 885..659 355 77.1 Minus
3R 32079331 3R 24407324..24407443 598..479 270 81.7 Minus
X 23542271 X 8307006..8307182 423..247 240 75.7 Minus
3R 32079331 3R 24421743..24421827 220..136 230 84.7 Minus
3L 28110227 3L 4433721..4433795 530..604 225 86.7 Plus
X 23542271 X 8292301..8292416 841..726 190 77.6 Minus
Blast to na_te.dros performed on 2015-02-11 03:03:41 has no hits.

BO08094.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:47 Download gff for BO08094.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6844-PA 1..870 17..887 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:27:59 Download gff for BO08094.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6844-PB 1..870 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:20 Download gff for BO08094.5prime
Subject Subject Range Query Range Percent Splice Strand
nAcRalpha-96Ab-RA 514..1391 8..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:25:51 Download gff for BO08094.5prime
Subject Subject Range Query Range Percent Splice Strand
nAChRalpha2-RA 514..1391 8..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:25:51 Download gff for BO08094.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24485941..24486200 8..268 98 -> Plus
3R 24487131..24487285 269..423 100 -> Plus
3R 24487423..24487603 424..604 100 -> Plus
3R 24488452..24488611 605..764 100 -> Plus
3R 24488781..24488902 765..887 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:20 Download gff for BO08094.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20311663..20311922 8..268 98 -> Plus
arm_3R 20312853..20313007 269..423 100 -> Plus
arm_3R 20313145..20313325 424..604 100 -> Plus
arm_3R 20314174..20314333 605..764 100 -> Plus
arm_3R 20314503..20314624 765..887 97   Plus

BO08094.complete Sequence

1762 bp (1762 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631048

> BO08094.complete
GAAGTTATCAGTCGACATGGCTCCTGGCTGCTGCACCACACGACCCCGCC
CCATCGCCCTGCTCGCTCACATCTGGCGCCACTGCAAGCCACTCTGCCTG
CTCCTGGTGCTCCTGCTCCTCTGCGAAACCGTTCAGGCGAATCCCGATGC
CAAGCGACTCTATGACGATCTGCTAAGCAACTACAATCGCCTCATCCGCC
CTGTGAGCAATAATACGGACACGGTGTTGGTCAAATTGGGCCTACGGCTC
TCCCAACTCATCGATTTGAATCTCAAAGATCAAATTCTAACCACCAACGT
GTGGCTGGAGCACGAATGGCAGGATCATAAATTCAAGTGGGATCCCTCGG
AGTATGGCGGCGTCACAGAGCTTTATGTGCCATCCGAGCACATCTGGCTG
CCCGACATCGTGCTCTACAACAATGCCGATGGCGAGTACGTGGTCACCAC
CATGACGAAGGCCATCCTCCACTATACCGGCAAAGTGGTCTGGACTCCGC
CGGCCATCTTCAAGTCCAGCTGTGAGATTGATGTGCGCTACTTTCCCTTC
GATCAGCAGACCTGCTTCATGAAGTTCGGCTCGTGGACCTACGACGGTGA
TCAGATCGATTTGAAGCACATCAGCCAGAAAAACGACAAGGACAACAAGG
TGGAGATAGGCATCGACCTGCGTGAGTACTATCCCAGTGTGGAGTGGGAC
ATTCTCGGCGTTCCGGCTGAGCGGCACGAGAAGTACTATCCCTGCTGTGC
CGAACCGTATCCGGATATCTTCTTCAACATCACCCTGAGGCGAAAGACTC
TCTTCTACACGGTTAACCTGATTATTCCATGTGTGGGCATCTCGTATCTT
TCGGTGCTGGTCTTTTACCTGCCCGCCGATTCTGGCGAGAAGATTGCTCT
GTGCATCAGCATCCTGCTGTCGCAAACCATGTTCTTCCTGCTCATATCGG
AGATTATACCATCGACTTCACTGGCATTGCCGCTACTGGGAAAATATCTA
CTGTTCACCATGTTGCTGGTTGGCCTGAGTGTTGTCATCACGATTATCAT
ACTAAACATACACTACCGGAAGCCGAGTACGCACAAGATGCGACCCTGGA
TTAGGTCCTTCTTCATCAAGAGATTGCCGAAACTCCTGCTGATGCGTGTG
CCCAAGGACCTGCTGCGTGACCTGGCGGCCAACAAGATCAACTACGGCCT
CAAGTTCAGCAAGACCAAGTTCGGACAGGCGCTGATGGACGAGATGCAAA
TGAACTCGGGCGGCTCCAGTCCAGACTCCCTGCGGCGGATGCAAGGTCGT
GTGGGTGCTGGTGGGTGCAATGGCATGCACGTGACCACGGCCACAAACAG
ATTCAGCGGCTTGGTGGGGGCTTTGGGCGGCGGACTGAGCACCCTGAGCG
GCTACAACGGACTGCCATCGGTGCTATCCGGATTGGACGACTCTTTGAGC
GATGTGGCCGCACGCAAAAAGTATCCTTTCGAGCTGGAAAAGGCCATCCA
CAACGTCATGTTCATACAGCACCACATGCAGCGGCAGGACGAGTTCAATG
CGGAAGATCAGGACTGGGGCTTTGTGGCCATGGTCATGGATCGCCTATTC
CTCTGGCTCTTTATGATCGCATCCTTGGTGGGCACATTTGTGATCCTAGG
CGAGGCTCCGTCGCTATATGACGATACCAAGGCCATTGATGTTCAGCTAT
CCGATGTTGCCAAGCAAATCTACAATCTAACCGAGAAGAAGAATGCAAGC
TTTCTAGACCAT

BO08094.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
nAChRalpha2-RB 1731 CG6844-PB 1..1728 17..1744 8640 100 Plus
nAChRalpha2-RA 1731 CG6844-PA 1..1728 17..1744 8640 100 Plus
nAChRalpha1-RC 1704 CG5610-PC 60..941 136..1020 1105 75.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
nAChRalpha2-RB 2319 CG6844-RB 453..2181 16..1744 8645 100 Plus
nAChRalpha2-RA 2387 CG6844-RA 521..2249 16..1744 8645 100 Plus
nAChRalpha1-RC 11027 CG5610-RC 1540..2421 136..1020 1105 75.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24488780..24489366 764..1350 2935 100 Plus
3R 32079331 3R 24485948..24486200 16..268 1265 100 Plus
3R 32079331 3R 24489595..24489801 1347..1553 1035 100 Plus
3R 32079331 3R 24490817..24491009 1552..1744 965 100 Plus
3R 32079331 3R 24487423..24487603 424..604 905 100 Plus
3R 32079331 3R 24488449..24488611 602..764 815 100 Plus
3R 32079331 3R 24487130..24487285 268..423 780 100 Plus
3R 32079331 3R 24405017..24405378 1020..659 580 77.3 Minus
3R 32079331 3R 24407324..24407443 598..479 270 81.7 Minus
X 23542271 X 8307006..8307182 423..247 240 75.7 Minus
3R 32079331 3R 24421743..24421827 220..136 230 84.7 Minus
3L 28110227 3L 4433721..4433795 530..604 225 86.7 Plus
X 23542271 X 8292301..8292416 841..726 190 77.6 Minus
Blast to na_te.dros performed on 2014-11-27 23:51:36 has no hits.

BO08094.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:28 Download gff for BO08094.complete
Subject Subject Range Query Range Percent Splice Strand
nAcRalpha-96Ab-RB 1..1731 17..1748 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:02 Download gff for BO08094.complete
Subject Subject Range Query Range Percent Splice Strand
nAcRalpha-96Ab-RB 337..2078 8..1752 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:01 Download gff for BO08094.complete
Subject Subject Range Query Range Percent Splice Strand
nAcRalpha-96Ab-RA 522..2249 17..1746 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:28 Download gff for BO08094.complete
Subject Subject Range Query Range Percent Splice Strand
nAcRalpha-96Ab-RB 337..2078 8..1752 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:48 Download gff for BO08094.complete
Subject Subject Range Query Range Percent Splice Strand
nAChRalpha2-RA 522..2249 17..1746 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:48 Download gff for BO08094.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24485949..24486200 17..268 100 -> Plus
3R 24487131..24487285 269..423 100 -> Plus
3R 24487423..24487603 424..604 100 -> Plus
3R 24488452..24488611 605..764 100 -> Plus
3R 24488781..24489366 765..1350 100 -> Plus
3R 24489599..24489800 1351..1552 100 -> Plus
3R 24490818..24491009 1553..1746 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:01 Download gff for BO08094.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20311671..20311922 17..268 100 -> Plus
arm_3R 20312853..20313007 269..423 100 -> Plus
arm_3R 20313145..20313325 424..604 100 -> Plus
arm_3R 20314174..20314333 605..764 100 -> Plus
arm_3R 20314503..20315088 765..1350 100 -> Plus
arm_3R 20315321..20315522 1351..1552 100 -> Plus
arm_3R 20316540..20316731 1553..1746 98   Plus

BO08094.pep Sequence

Translation from 16 to 1762

> BO08094.pep
MAPGCCTTRPRPIALLAHIWRHCKPLCLLLVLLLLCETVQANPDAKRLYD
DLLSNYNRLIRPVSNNTDTVLVKLGLRLSQLIDLNLKDQILTTNVWLEHE
WQDHKFKWDPSEYGGVTELYVPSEHIWLPDIVLYNNADGEYVVTTMTKAI
LHYTGKVVWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGDQIDLK
HISQKNDKDNKVEIGIDLREYYPSVEWDILGVPAERHEKYYPCCAEPYPD
IFFNITLRRKTLFYTVNLIIPCVGISYLSVLVFYLPADSGEKIALCISIL
LSQTMFFLLISEIIPSTSLALPLLGKYLLFTMLLVGLSVVITIIILNIHY
RKPSTHKMRPWIRSFFIKRLPKLLLMRVPKDLLRDLAANKINYGLKFSKT
KFGQALMDEMQMNSGGSSPDSLRRMQGRVGAGGCNGMHVTTATNRFSGLV
GALGGGLSTLSGYNGLPSVLSGLDDSLSDVAARKKYPFELEKAIHNVMFI
QHHMQRQDEFNAEDQDWGFVAMVMDRLFLWLFMIASLVGTFVILGEAPSL
YDDTKAIDVQLSDVAKQIYNLTEKKNASFLDH

BO08094.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
nAChRalpha2-PB 576 CG6844-PB 1..576 1..576 3042 100 Plus
nAChRalpha2-PA 576 CG6844-PA 1..576 1..576 3042 100 Plus
nAChRalpha1-PC 567 CG5610-PC 21..558 41..571 1578 57.7 Plus
nAChRalpha1-PA 567 CG5610-PA 21..558 41..571 1578 57.7 Plus
nAChRalpha1-PB 597 CG5610-PB 21..558 41..571 1578 57.7 Plus