Clone Sequence Records
BO08095.3prime Sequence
938 bp (741 high quality bases) assembled on 2006-01-06
> BO08095.3prime
ATGGTCTAGAAAGCTTGCTTTTCGGGCAATATCACAGTGCAGAGGCTCGT
CCTCCGGCTGACGGTTGTTGATGGCGTTTCTGGGCGAGATCACAAACGGC
TTTCGCTTCTGGGCATTCCTCTTTCGTCGCTGGGCTCGTTTTCTCCTACA
GTGTATCACGCAGAAGATGACAATTAAAAGCACAAAACAAACTCCGCCAA
AGCAGCCAGCTCCAAAGAGCCAGAAGCTGCGCGTTTCGGCAAACTGCAGT
GTCGTCTGGCAACTGGCGAATGTTGGCGAATGGATCGTTCGATTGTAGGG
CAGTGGACACTCGCGGATGTCGAGCGCCTCCAAGCAAACTGGCACGAACT
TCGGACTGGCGCCGAGCATCATAAGATGGTTGGTGACCTGCTGGCAGCCA
CACTGGCTCAACTGCGACTTGGTCAGATCGATGACCTGCAGGTGGCACAT
ATTCGCCAGGCTGTCGATCCTGAAGTTCTGCAGCGGATTCATCGAGGCAT
TCAGTTGCCAGAGTTTTGGAAGTATGCCCAGATCGGGTAACTCCTGTAGC
TCGCAACCTGCCACGTTCAGGTACTCCAGTGGAGCACGAATGGGCTTCTC
CAGTGCCTGAAGATTGAGGGATGTTAGCTCATTGCTATCGATGTATAGGT
TTCTCAGTCGCGGCAGCTGGAACAACTCCAGCGGTATCGTTGTCAGTCCA
TTATTCGAAAGATCAATTTCCTGGAGCGAGGTGAGTGGCTCGAAGGTTCC
CACCTCCACCGATAAGATCATGTTATCATAGAGCATCAGAAACTTAATGT
CCGTGTATCGCTGAAACGAGCTAGTTTTCAGCTTCCTGATGCGATTGTGC
GATAGATCCAGAACCTCCACCGAACTCTTGAGGTTCTGTGGCACCTCCTT
GAGGTCCAAGTCGTACCAACGAATCCGGAGCAGCTTAT
BO08095.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15658-PA | 1032 | CG15658-RA | 110..1029 | 938..19 | 4575 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:05:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lapsyn-RA | 1630 | CG15658-RA | 409..1328 | 938..19 | 4585 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21198226..21198434 | 724..516 | 1045 | 100 | Minus |
2R | 25286936 | 2R | 21198492..21198677 | 515..330 | 930 | 100 | Minus |
2R | 25286936 | 2R | 21198761..21198917 | 330..174 | 785 | 100 | Minus |
2R | 25286936 | 2R | 21198975..21199129 | 173..19 | 775 | 100 | Minus |
2R | 25286936 | 2R | 21198019..21198165 | 866..720 | 735 | 100 | Minus |
2R | 25286936 | 2R | 21197720..21197795 | 938..863 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:05:14 has no hits.
BO08095.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:49 Download gff for
BO08095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15658-PA | 110..1032 | 18..938 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:00 Download gff for
BO08095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15658-PA | 110..1032 | 18..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:22 Download gff for
BO08095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lapsyn-RA | 409..1337 | 10..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:25:53 Download gff for
BO08095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lapsyn-RA | 409..1337 | 10..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:25:53 Download gff for
BO08095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21197720..21197793 | 865..938 | 98 | -> | Minus |
2R | 21198021..21198164 | 721..864 | 100 | -> | Minus |
2R | 21198230..21198434 | 516..720 | 100 | -> | Minus |
2R | 21198492..21198677 | 330..515 | 100 | -> | Minus |
2R | 21198762..21198917 | 174..329 | 100 | -> | Minus |
2R | 21198975..21199138 | 10..173 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:22 Download gff for
BO08095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17085225..17085298 | 865..938 | 98 | -> | Minus |
arm_2R | 17085526..17085669 | 721..864 | 100 | -> | Minus |
arm_2R | 17085735..17085939 | 516..720 | 100 | -> | Minus |
arm_2R | 17085997..17086182 | 330..515 | 100 | -> | Minus |
arm_2R | 17086267..17086422 | 174..329 | 100 | -> | Minus |
arm_2R | 17086480..17086643 | 10..173 | 97 | | Minus |
BO08095.5prime Sequence
866 bp (805 high quality bases) assembled on 2006-01-06
> BO08095.5prime
GAAGTTATCAGTCGACATGGAACTGCATTGGCAGCTGCTGACGTTCATCG
TGTGCCTCCAGTTGTTGCATTCCGCCGGATTCATCATTCAGTCGGAAGTG
CGCAAGTGCACGTACGGCCATATCGATAAGCTGCTCCGGATTCGTTGCTA
CGACTTGGACCTCAAGGAGGTGCCACAGAACCTCAAGAGTTCGGTGGAGG
TTCTGGATCTATCGCACAATCGCATCAGGAAGCTGAAAACTAGCTCGTTT
CAGCGATACACGGACATTAAGTTTCTGATGCTCTATGATAACATGATCTT
ATCGGTGGAGGTGGGAACCTTCGAGCCACTCACCTCGCTCCAGGAAATTG
ATCTTTCGAATAATGGACTGACAACGATACCGCTGGAGTTGTTCCAGCTG
CCGCGACTGAGAAACCTATACATCGATAGCAATGAGCTAACATCCCTCAA
TCTTCAGGCACTGGAGAAGCCCATTCGTGCTCCACTGGAGTACCTGAACG
TGGCAGGTTGCGAGCTACAGGAGTTACCCGATCTGGGCATACTTCCAAAA
CTCTGGCAACTGAATGCCTCGATGAATCCGCTGCAGAACTTCAGGATCGA
CAGCCTGGCGAATATGTGCCACCTGCAGGTCATCGATCTGACCAAGTCGC
AGTTGAGCCAGTGTGGCTGCCAGCAGGTCACCAACCATCTTATGATGCTC
GGCGCCAGTCCGAAGTTCGTGCCAGTTTGCTTGGAGGCGCTCGACATCCG
CGAGTGTCCACTGCCCTACAATCGAACGATCCATTCGCCAACATTCGCCA
GTTGCCAGACGACACTGCAGTTTGCCGAAACGCGCAGCTTCTGGCTCTTT
GGAGCTGGCTGCTTTT
BO08095.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15658-PA | 1032 | CG15658-RA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:28:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lapsyn-RA | 1630 | CG15658-RA | 299..1148 | 16..865 | 4250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:27:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21198226..21198434 | 340..548 | 1045 | 100 | Plus |
2R | 25286936 | 2R | 21197610..21197795 | 16..201 | 930 | 100 | Plus |
2R | 25286936 | 2R | 21198492..21198677 | 549..734 | 930 | 100 | Plus |
2R | 25286936 | 2R | 21198019..21198165 | 198..344 | 735 | 100 | Plus |
2R | 25286936 | 2R | 21198761..21198892 | 734..865 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:27:59 has no hits.
BO08095.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:50 Download gff for
BO08095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15658-PA | 1..849 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:02 Download gff for
BO08095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15658-PA | 1..849 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:32:38 Download gff for
BO08095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lapsyn-RA | 292..1148 | 9..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:43:48 Download gff for
BO08095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lapsyn-RA | 292..1148 | 9..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:43:48 Download gff for
BO08095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21197601..21197793 | 5..199 | 97 | -> | Plus |
2R | 21198021..21198164 | 200..343 | 100 | -> | Plus |
2R | 21198230..21198434 | 344..548 | 100 | -> | Plus |
2R | 21198492..21198677 | 549..734 | 100 | -> | Plus |
2R | 21198762..21198892 | 735..866 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:32:38 Download gff for
BO08095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17085106..17085298 | 5..199 | 97 | -> | Plus |
arm_2R | 17085526..17085669 | 200..343 | 100 | -> | Plus |
arm_2R | 17085735..17085939 | 344..548 | 100 | -> | Plus |
arm_2R | 17085997..17086182 | 549..734 | 100 | -> | Plus |
arm_2R | 17086267..17086397 | 735..866 | 99 | | Plus |
BO08095.complete Sequence
1063 bp (1063 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631049
> BO08095.complete
GAAGTTATCAGTCGACATGGAACTGCATTGGCAGCTGCTGACGTTCATCG
TGTGCCTCCAGTTGTTGCATTCCGCCGGATTCATCATTCAGTCGGAAGTG
CGCAAGTGCACGTACGGCCATATCGATAAGCTGCTCCGGATTCGTTGCTA
CGACTTGGACCTCAAGGAGGTGCCACAGAACCTCAAGAGTTCGGTGGAGG
TTCTGGATCTATCGCACAATCGCATCAGGAAGCTGAAAACTAGCTCGTTT
CAGCGATACACGGACATTAAGTTTCTGATGCTCTATGATAACATGATCTT
ATCGGTGGAGGTGGGAACCTTCGAGCCACTCACCTCGCTCCAGGAAATTG
ATCTTTCGAATAATGGACTGACAACGATACCGCTGGAGTTGTTCCAGCTG
CCGCGACTGAGAAACCTATACATCGATAGCAATGAGCTAACATCCCTCAA
TCTTCAGGCACTGGAGAAGCCCATTCGTGCTCCACTGGAGTACCTGAACG
TGGCAGGTTGCGAGCTACAGGAGTTACCCGATCTGGGCATACTTCCAAAA
CTCTGGCAACTGAATGCCTCGATGAATCCGCTGCAGAACTTCAGGATCGA
CAGCCTGGCGAATATGTGCCACCTGCAGGTCATCGATCTGACCAAGTCGC
AGTTGAGCCAGTGTGGCTGCCAGCAGGTCACCAACCATCTTATGATGCTC
GGCGCCAGTCCGAAGTTCGTGCCAGTTTGCTTGGAGGCGCTCGACATCCG
CGAGTGTCCACTGCCCTACAATCGAACGATCCATTCGCCAACATTCGCCA
GTTGCCAGACGACACTGCAGTTTGCCGAAACGCGCAGCTTCTGGCTCTTT
GGAGCTGGCTGCTTTGGCGGAGTTTGTTTTGTGCTTTTAATTGTCATCTT
CTGCGTGATACACTGTAGGAGAAAACGAGCCCAGCGACGAAAGAGGAATG
CCCAGAAGCGAAAGCCGTTTGTGATCTCGCCCAGAAACGCCATCAACAAC
CGTCAGCCGGAGGACGAGCCTCTGCACTGTGATATTGCCCGAAAAGCAAG
CTTTCTAGACCAT
BO08095.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:45:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lapsyn-RA | 1032 | CG15658-PA | 1..1029 | 17..1045 | 5145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lapsyn-RA | 1630 | CG15658-RA | 299..1328 | 16..1045 | 5150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:45:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21198226..21198434 | 340..548 | 1045 | 100 | Plus |
2R | 25286936 | 2R | 21197610..21197795 | 16..201 | 930 | 100 | Plus |
2R | 25286936 | 2R | 21198492..21198677 | 549..734 | 930 | 100 | Plus |
2R | 25286936 | 2R | 21198761..21198917 | 734..890 | 785 | 100 | Plus |
2R | 25286936 | 2R | 21198975..21199129 | 891..1045 | 775 | 100 | Plus |
2R | 25286936 | 2R | 21198019..21198165 | 198..344 | 735 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:45:54 has no hits.
BO08095.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:25 Download gff for
BO08095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15658-RA | 1..1032 | 17..1046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:34 Download gff for
BO08095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15658-RA | 290..1335 | 9..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:56 Download gff for
BO08095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lapsyn-RA | 300..1324 | 17..1041 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:25 Download gff for
BO08095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15658-RA | 290..1335 | 9..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:11 Download gff for
BO08095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lapsyn-RA | 300..1324 | 17..1041 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:11 Download gff for
BO08095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21197611..21197793 | 17..199 | 100 | -> | Plus |
2R | 21198021..21198164 | 200..343 | 100 | -> | Plus |
2R | 21198230..21198434 | 344..548 | 100 | -> | Plus |
2R | 21198492..21198677 | 549..734 | 100 | -> | Plus |
2R | 21198762..21198917 | 735..890 | 100 | -> | Plus |
2R | 21198975..21199125 | 891..1041 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:56 Download gff for
BO08095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17085116..17085298 | 17..199 | 100 | -> | Plus |
arm_2R | 17085526..17085669 | 200..343 | 100 | -> | Plus |
arm_2R | 17085735..17085939 | 344..548 | 100 | -> | Plus |
arm_2R | 17085997..17086182 | 549..734 | 100 | -> | Plus |
arm_2R | 17086267..17086422 | 735..890 | 100 | -> | Plus |
arm_2R | 17086480..17086630 | 891..1041 | 100 | | Plus |
BO08095.pep Sequence
Translation from 16 to 1063
> BO08095.pep
MELHWQLLTFIVCLQLLHSAGFIIQSEVRKCTYGHIDKLLRIRCYDLDLK
EVPQNLKSSVEVLDLSHNRIRKLKTSSFQRYTDIKFLMLYDNMILSVEVG
TFEPLTSLQEIDLSNNGLTTIPLELFQLPRLRNLYIDSNELTSLNLQALE
KPIRAPLEYLNVAGCELQELPDLGILPKLWQLNASMNPLQNFRIDSLANM
CHLQVIDLTKSQLSQCGCQQVTNHLMMLGASPKFVPVCLEALDIRECPLP
YNRTIHSPTFASCQTTLQFAETRSFWLFGAGCFGGVCFVLLIVIFCVIHC
RRKRAQRRKRNAQKRKPFVISPRNAINNRQPEDEPLHCDIARKASFLDH
BO08095.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lapsyn-PA | 343 | CG15658-PA | 1..343 | 1..343 | 1802 | 100 | Plus |
sli-PB | 1469 | CG43758-PB | 82..238 | 40..203 | 202 | 34.1 | Plus |
sli-PD | 1480 | CG43758-PD | 82..238 | 40..203 | 202 | 34.1 | Plus |
sli-PA | 1480 | CG43758-PA | 82..238 | 40..203 | 202 | 34.1 | Plus |
rk-PA | 1360 | CG8930-PA | 159..345 | 38..223 | 183 | 30.7 | Plus |