Clone Sequence Records
BO08096.3prime Sequence
906 bp (817 high quality bases) assembled on 2006-01-06
> BO08096.3prime
ATGGTCTAGAAAGCTTGCGACATCGACGGGTTCCTTGGCGGTCTCCGTGT
CGGTTAATCGCACCACGGTGACCTCGGTGGTGACCCCGTTCAGCACCATT
GCCATCGATTGCTGATCTCGCCATGGTGTGGTCAAAATTGTGAACCGCTG
ACGCAGACTTCCCGGCGTGGAAAGTAGTTTAAATATCGCCACGGCAGGAA
TCATCACAACCGAGGAACCAGCTATGCACCAACCCAGCGCATTGGCCCAA
CTGGGATACACATAGTCCGCATATGTCAGTGGCTCGTAGCCAATCAGCCC
GTAAACCGTGATGAAGAGCAGGAAAATTGGTGCCACAAATCGCCAACACA
CCTGCCAGTATCTTCCCGGTGGAAAACCAATCATGTCCCGTATATCCTCG
CTAAATCGATTGGTTCCGTAGATCCAGGACACGGCGATTGCCTCAAAGAA
CACGGCCACCAAAATCGAGTAGCCAGCAGCGTAACGATCCAGCAGATGGA
AGAAATAGAAGCCACCCTGAGTGCAACTGGCCAAACCGACCACGAAGTAC
AGGGAAAACAGTCCAGCTACAAACAGCTCTCGGTTTCTTTTGATCTTGGG
AAACTCGTCGCTCAAAGCTGTGATTATAGCCTCTGAACCACCAAACGAAC
TATCCAAGCCCAAAGTTAGCAGCATCATGAAGAATATTAGAGCCCAGAAA
GTGCTGGCCGGCATGGTGGCAATGGCAGCTGGATAGACCACGAAAACCAG
ACCAGGTCCTTCGGTGGCAACATCTTCAATTCTTACACCCAGTGTGTGGG
CCATGTAACCCAGCACGGAGAATATCACAAAGCCGGCTATAAAGCTGGTA
GCCGAGTTAATGAAACTGGTTAACAAAGCATCCTTGTATACATTGTTATG
GTATTT
BO08096.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8380-PA | 1896 | DAT-RA | 1006..1893 | 906..19 | 4440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:53:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DAT-RB | 3040 | CG8380-RB | 1329..2216 | 906..19 | 4440 | 100 | Minus |
DAT-RA | 3040 | CG8380-RA | 1329..2216 | 906..19 | 4440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16559391..16560018 | 19..646 | 3140 | 100 | Plus |
2R | 25286936 | 2R | 16560073..16560315 | 646..888 | 1200 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:53:15 has no hits.
BO08096.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:51 Download gff for
BO08096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DAT-PA | 1006..1896 | 16..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:04 Download gff for
BO08096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8380-PA | 1006..1896 | 16..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:11:47 Download gff for
BO08096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DAT-RA | 1329..2222 | 11..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:38 Download gff for
BO08096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DAT-RA | 1329..2222 | 11..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:38 Download gff for
BO08096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16559385..16560017 | 11..645 | 99 | <- | Plus |
2R | 16560073..16560310 | 646..883 | 100 | <- | Plus |
2R | 16560374..16560396 | 884..906 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:11:47 Download gff for
BO08096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12446890..12447522 | 11..645 | 99 | <- | Plus |
arm_2R | 12447578..12447815 | 646..883 | 100 | <- | Plus |
arm_2R | 12447879..12447901 | 884..906 | 100 | | Plus |
BO08096.5prime Sequence
917 bp (782 high quality bases) assembled on 2006-01-06
> BO08096.5prime
GAAGTTATCAGTCGACATGTCACCAACCGGACATATATCCAAATCAAAGA
CGCCCACGCCACACGATAACGATAACAATAGCATCAGCGACGAGCGCGAA
ACATGGAGCGGCAAAGTGGATTTTTTATTATCGGTTATTGGATTCGCCGT
CGATTTAGCAAACGTCTGGAGATTTCCCTATTTGTGCTACAAAAATGGCG
GTGGCGCTTTTCTTGTGCCCTACGGCATTATGTTGGTGGTCGGTGGCATT
CCTCTGTTCTATATGGAATTGGCCCTGGGTCAGCACAATCGTAAGGGTGC
CATAACCTGCTGGGGTCGCTTGGTGCCCCTCTTCAAAGGAATTGGATATG
CCGTGGTGCTGATAGCCTTCTATGTGGACTTCTATTACAATGTGATTATT
GCCTGGTCGTTGCGTTTCTTTTTTGCATCCTTCACCAACTCGCTGCCTTG
GACGTCGTGTAATAATATTTGGAACACACCAAATTGTAGACCGTTTGAGA
GCCAAAATGCATCTCGTGTTCCGGTTATTGGTAACTATAGTGACTTGTAT
GCCATGGGAAATCAAAGCCTGCTCTACAATGAGACATATATGAATGGTTC
GAGCTTGGATACGTCAGCGGTTGGCCATGTGGAGGGTTTTCAGTCCGCAG
CATCGGAATATTTTAACCGCTACATTTTGGAGCTGAACCGCAGCGAGGGA
ATCCATGACTTGGGCGCCATCAAATGGGACATGGCGCTGTGCCTTCTGAT
TGTCTACTTAATTTGTTACTTCTCCCTGTGGAAGGGTATCAGCACTTCGG
GCAAGGTTGTGTGGTTTACTGCCCTCTTTCCCTATGCAGTGCTACTGATT
CTTCTAATCAGAGGGCTCACACTGCCCGGGATCTTTTCTGGGCATTCAGT
ATTATCTTACGCCCAAC
BO08096.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8380-PA | 1896 | DAT-RA | 1..860 | 17..876 | 4300 | 100 | Plus |
CG8380-PA | 1896 | DAT-RA | 859..900 | 876..917 | 210 | 100 | Plus |
CG1732-PB | 1527 | CG1732-RB | 237..275 | 160..198 | 145 | 94.8 | Plus |
CG1732-PA | 1911 | CG1732-RA | 237..275 | 160..198 | 145 | 94.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:28:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DAT-RB | 3040 | CG8380-RB | 324..1223 | 17..917 | 4480 | 99.9 | Plus |
DAT-RA | 3040 | CG8380-RA | 324..1223 | 17..917 | 4480 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16560502..16560751 | 917..667 | 1205 | 99.6 | Minus |
2R | 25286936 | 2R | 16563770..16563957 | 204..17 | 940 | 100 | Minus |
2R | 25286936 | 2R | 16560809..16560982 | 666..493 | 870 | 100 | Minus |
2R | 25286936 | 2R | 16561043..16561199 | 493..337 | 785 | 100 | Minus |
2R | 25286936 | 2R | 16561261..16561397 | 339..203 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:28:34 has no hits.
BO08096.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:52 Download gff for
BO08096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DAT-PA | 1..900 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:05 Download gff for
BO08096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8380-PA | 1..900 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:32:43 Download gff for
BO08096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DAT-RA | 313..1223 | 6..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:43:53 Download gff for
BO08096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DAT-RA | 313..1223 | 6..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:43:53 Download gff for
BO08096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16560502..16560751 | 667..917 | 99 | <- | Minus |
2R | 16560809..16560981 | 494..666 | 100 | <- | Minus |
2R | 16561043..16561197 | 339..493 | 100 | <- | Minus |
2R | 16561262..16561396 | 204..338 | 100 | <- | Minus |
2R | 16563771..16563968 | 6..203 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:32:43 Download gff for
BO08096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12448007..12448256 | 667..917 | 99 | <- | Minus |
arm_2R | 12448314..12448486 | 494..666 | 100 | <- | Minus |
arm_2R | 12448548..12448702 | 339..493 | 100 | <- | Minus |
arm_2R | 12448767..12448901 | 204..338 | 100 | <- | Minus |
arm_2R | 12451276..12451473 | 6..203 | 98 | | Minus |
BO08096.complete Sequence
1927 bp (1927 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631050
> BO08096.complete
GAAGTTATCAGTCGACATGTCACCAACCGGACATATATCCAAATCAAAGA
CGCCCACGCCACACGATAACGATAACAATAGCATCAGCGACGAGCGCGAA
ACATGGAGCGGCAAAGTGGATTTTTTATTATCGGTTATTGGATTCGCCGT
CGATTTAGCAAACGTCTGGAGATTTCCCTATTTGTGCTACAAAAATGGCG
GTGGCGCTTTTCTTGTGCCCTACGGCATTATGTTGGTGGTCGGTGGCATT
CCTCTGTTCTATATGGAATTGGCCCTGGGTCAGCACAATCGTAAGGGTGC
CATAACCTGCTGGGGTCGCTTGGTGCCCCTCTTCAAAGGAATTGGATATG
CCGTGGTGCTGATAGCCTTCTATGTGGACTTCTATTACAATGTGATTATT
GCCTGGTCGTTGCGTTTCTTTTTTGCATCCTTCACCAACTCGCTGCCTTG
GACGTCGTGTAATAATATTTGGAACACACCAAATTGTAGACCGTTTGAGA
GCCAAAATGCATCTCGTGTTCCGGTTATTGGTAACTATAGTGACTTGTAT
GCCATGGGAAATCAAAGCCTGCTCTACAATGAGACATATATGAATGGTTC
GAGCTTGGATACGTCAGCGGTTGGCCATGTGGAGGGTTTTCAGTCCGCAG
CATCGGAATATTTTAACCGCTACATTTTGGAGCTGAACCGCAGCGAGGGA
ATCCATGACTTGGGCGCCATCAAATGGGACATGGCGCTGTGCCTTCTGAT
TGTCTACTTAATTTGTTACTTCTCCCTGTGGAAGGGTATCAGCACTTCGG
GCAAGGTTGTGTGGTTTACTGCCCTCTTTCCCTATGCAGTGCTACTGATT
CTTCTAATCAGAGGGCTCACACTGCCGGGATCTTTTCTGGGCATTCAGTA
TTATCTTACGCCCAACTTTAGTGCCATCTATAAGGCTGAGGTCTGGGTGG
ATGCTGCCACCCAGGTGTTTTTCTCATTGGGTCCAGGATTTGGAGTGCTG
CTGGCCTATGCATCCTATAATAAATACCATAACAATGTATACAAGGATGC
TTTGTTAACCAGTTTCATTAACTCGGCTACCAGCTTTATAGCCGGCTTTG
TGATATTCTCCGTGCTGGGTTACATGGCCCACACACTGGGTGTAAGAATT
GAAGATGTTGCCACCGAAGGACCTGGTCTGGTTTTCGTGGTCTATCCAGC
TGCCATTGCCACCATGCCGGCCAGCACTTTCTGGGCTCTAATATTCTTCA
TGATGCTGCTAACTTTGGGCTTGGATAGTTCGTTTGGTGGTTCAGAGGCT
ATAATCACAGCTTTGAGCGACGAGTTTCCCAAGATCAAAAGAAACCGAGA
GCTGTTTGTAGCTGGACTGTTTTCCCTGTACTTCGTGGTCGGTTTGGCCA
GTTGCACTCAGGGTGGCTTCTATTTCTTCCATCTGCTGGATCGTTACGCT
GCTGGCTACTCGATTTTGGTGGCCGTGTTCTTTGAGGCAATCGCCGTGTC
CTGGATCTACGGAACCAATCGATTTAGCGAGGATATACGGGACATGATTG
GTTTTCCACCGGGAAGATACTGGCAGGTGTGTTGGCGATTTGTGGCACCA
ATTTTCCTGCTCTTCATCACGGTTTACGGGCTGATTGGCTACGAGCCACT
GACATATGCGGACTATGTGTATCCCAGTTGGGCCAATGCGCTGGGTTGGT
GCATAGCTGGTTCCTCGGTTGTGATGATTCCTGCCGTGGCGATATTTAAA
CTACTTTCCACGCCGGGAAGTCTGCGTCAGCGGTTCACAATTTTGACCAC
ACCATGGCGAGATCAGCAATCGATGGCAATGGTGCTGAACGGGGTCACCA
CCGAGGTCACCGTGGTGCGATTAACCGACACGGAGACCGCCAAGGAACCC
GTCGATGTCGCAAGCTTTCTAGACCAT
BO08096.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DAT-RB | 1935 | CG8380-PB | 1..1893 | 17..1909 | 9465 | 100 | Plus |
DAT-RA | 1896 | CG8380-PA | 1..1893 | 17..1909 | 9465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DAT-RB | 3040 | CG8380-RB | 324..2216 | 17..1909 | 9465 | 100 | Plus |
DAT-RA | 3040 | CG8380-RA | 324..2216 | 17..1909 | 9465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16559391..16560018 | 1909..1282 | 3140 | 100 | Minus |
2R | 25286936 | 2R | 16560373..16560751 | 1045..667 | 1895 | 100 | Minus |
2R | 25286936 | 2R | 16560073..16560315 | 1282..1040 | 1200 | 99.6 | Minus |
2R | 25286936 | 2R | 16563770..16563957 | 204..17 | 940 | 100 | Minus |
2R | 25286936 | 2R | 16560809..16560982 | 666..493 | 870 | 100 | Minus |
2R | 25286936 | 2R | 16561043..16561199 | 493..337 | 785 | 100 | Minus |
2R | 25286936 | 2R | 16561261..16561397 | 339..203 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:44:51 has no hits.
BO08096.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:29 Download gff for
BO08096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DAT-RA | 1..1896 | 17..1912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:04 Download gff for
BO08096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DAT-RA | 333..2242 | 6..1917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:50 Download gff for
BO08096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DAT-RA | 324..2216 | 17..1911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:29 Download gff for
BO08096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DAT-RA | 333..2242 | 6..1917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:53 Download gff for
BO08096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DAT-RA | 324..2216 | 17..1911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:53 Download gff for
BO08096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16560809..16560981 | 494..666 | 100 | <- | Minus |
2R | 16561043..16561197 | 339..493 | 100 | <- | Minus |
2R | 16561262..16561396 | 204..338 | 100 | <- | Minus |
2R | 16563771..16563957 | 17..203 | 100 | | Minus |
2R | 16559388..16560017 | 1283..1911 | 99 | <- | Minus |
2R | 16560073..16560310 | 1045..1282 | 100 | <- | Minus |
2R | 16560374..16560751 | 667..1044 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:50 Download gff for
BO08096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12446893..12447522 | 1283..1911 | 99 | <- | Minus |
arm_2R | 12447578..12447815 | 1045..1282 | 100 | <- | Minus |
arm_2R | 12447879..12448256 | 667..1044 | 100 | <- | Minus |
arm_2R | 12448314..12448486 | 494..666 | 100 | <- | Minus |
arm_2R | 12448548..12448702 | 339..493 | 100 | <- | Minus |
arm_2R | 12448767..12448901 | 204..338 | 100 | <- | Minus |
arm_2R | 12451276..12451462 | 17..203 | 100 | | Minus |
BO08096.pep Sequence
Translation from 16 to 1927
> BO08096.pep
MSPTGHISKSKTPTPHDNDNNSISDERETWSGKVDFLLSVIGFAVDLANV
WRFPYLCYKNGGGAFLVPYGIMLVVGGIPLFYMELALGQHNRKGAITCWG
RLVPLFKGIGYAVVLIAFYVDFYYNVIIAWSLRFFFASFTNSLPWTSCNN
IWNTPNCRPFESQNASRVPVIGNYSDLYAMGNQSLLYNETYMNGSSLDTS
AVGHVEGFQSAASEYFNRYILELNRSEGIHDLGAIKWDMALCLLIVYLIC
YFSLWKGISTSGKVVWFTALFPYAVLLILLIRGLTLPGSFLGIQYYLTPN
FSAIYKAEVWVDAATQVFFSLGPGFGVLLAYASYNKYHNNVYKDALLTSF
INSATSFIAGFVIFSVLGYMAHTLGVRIEDVATEGPGLVFVVYPAAIATM
PASTFWALIFFMMLLTLGLDSSFGGSEAIITALSDEFPKIKRNRELFVAG
LFSLYFVVGLASCTQGGFYFFHLLDRYAAGYSILVAVFFEAIAVSWIYGT
NRFSEDIRDMIGFPPGRYWQVCWRFVAPIFLLFITVYGLIGYEPLTYADY
VYPSWANALGWCIAGSSVVMIPAVAIFKLLSTPGSLRQRFTILTTPWRDQ
QSMAMVLNGVTTEVTVVRLTDTETAKEPVDVASFLDH
BO08096.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DAT-PB | 644 | CG8380-PB | 1..631 | 1..631 | 3334 | 100 | Plus |
DAT-PA | 631 | CG8380-PA | 1..631 | 1..631 | 3334 | 100 | Plus |
SerT-PB | 622 | CG4545-PB | 74..599 | 27..589 | 1551 | 50.8 | Plus |
SerT-PA | 622 | CG4545-PA | 74..599 | 27..589 | 1551 | 50.8 | Plus |
CG1732-PA | 636 | CG1732-PA | 28..608 | 5..593 | 1405 | 45.2 | Plus |