Clone BO08101 Report

Search the DGRC for BO08101

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:81
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptRagC-RA
Protein status:BO08101.pep: validated full length
Sequenced Size:1189

Clone Sequence Records

BO08101.3prime Sequence

830 bp (829 high quality bases) assembled on 2006-01-06

> BO08101.3prime
ATGGTCTAGAAAGCTTGCATTAATTGGCTGCGCTCGCGAAATTCCACCTG
CGTCGTGGCCATGGCGAATCAGGGTCTGCTCATCGACCAGATCATCGTCG
TCCTGGTCGTTGTTCTCCAGCTGCTTCTGGCGCTTTAGCCGCAGCTCGAA
TACCTCGCTGATGGCGTCGCGGAAACAGATGAAATTGTAGTCGATGACGC
CCTGCCGGTTGAAGTTCTCCTCGCGCAGGATGCAGACCAGGGCCAGGAAC
TTGTTCACCTCCCGCAGGTAGAGTATCGTGTTGTTGTTTAACTTGATGAG
ACTAGAGCTCCCGCTGTCAAAGGCGGTTTCTTCGGAGCTGTATATGCTGG
ACAGATCAATGACCACGTCAATCATATCGCAGCAGAGCTCATACGTCTGC
ATATCGACTGGTGACGAGTCCGTGGCTATGTAAATTTTGGAAACCACATC
GAACAGAAAGGCTTTTTCTATTCCGGAGTTTGGTATAAAAATGTTCAGCA
GATTCTCCAGCGTCGGAAGCTGGGGAATCAGCTTCTGCACCACCTTGGAG
AAGGCCTCGAAGATGGAGTGGTCGTATATGGAGGTCAGATGGAAACTCAG
GTGGATCTGATCGAGGCCAGCCTCGTTAAGGTCATCCGACGACCGCTGGT
GTATGTCCCGCTGCGATTCCATTTTCGAGTCGTCGCTAATTCCATCCACC
TTGTGTATAAACACCTCGAACTTGATGCGCTTGTTCACTTTGTAGGCCTG
CAGCACTGTGTTCTTGAACTTGGTCAGCGCCTCGTTGTAGTCATCCTTGG
CATCGATGACAAAGACCAGGGCTCCACAGC

BO08101.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8707-PA 1158 CG8707-RA 344..1155 830..19 4060 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
RagC-D-RA 1558 CG8707-RA 520..1331 830..19 4060 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:11:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8161906..8162227 19..340 1610 100 Plus
2R 25286936 2R 8162488..8162708 481..701 1105 100 Plus
2R 25286936 2R 8162286..8162428 338..480 715 100 Plus
2R 25286936 2R 8162768..8162900 698..830 665 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:11:07 has no hits.

BO08101.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:53 Download gff for BO08101.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8707-PA 344..1158 18..830 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:07 Download gff for BO08101.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8707-PA 344..1158 18..830 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:58:04 Download gff for BO08101.3prime
Subject Subject Range Query Range Percent Splice Strand
RagC-D-RA 520..1336 13..830 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:51:22 Download gff for BO08101.3prime
Subject Subject Range Query Range Percent Splice Strand
RagC-D-RA 520..1336 13..830 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:51:22 Download gff for BO08101.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8161901..8162224 13..337 99 <- Plus
2R 8162286..8162428 338..480 100 <- Plus
2R 8162488..8162706 481..699 100 <- Plus
2R 8162770..8162900 700..830 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:58:04 Download gff for BO08101.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4049993..4050211 481..699 100 <- Plus
arm_2R 4049406..4049729 13..337 99 <- Plus
arm_2R 4049791..4049933 338..480 100 <- Plus
arm_2R 4050275..4050405 700..830 100   Plus

BO08101.5prime Sequence

855 bp (854 high quality bases) assembled on 2006-01-06

> BO08101.5prime
GAAGTTATCAGTCGACATGAGCTACGATGATGATGACTATCCGGCGGACA
CGTTCCCCAAGGACTTTGGCTACCGGGCCTACAACCAGGATGGCCTGGAA
CTGGAGCCCAATGCAACGGGCAGCAGCGAGACAAAGCCGCGCATTCTGCT
GATGGGAATGCGCAGATCCGGCAAGAGCTCCATCCAAAAAGTGGTCTTCC
ACAAGATGTCGCCGAACGAGACGCTCTTCCTGGAGTCGACCAGTAAGATC
GTGAAGGACGACATCAACAACTCCAGCTTTGTGCAGTTCCAGATCTGGGA
CTTCCCCGGCCAGATTGACTTCTTCGAGCCGACCTTTGATTCTGACATGA
TCTTTGGAGGCTGTGGAGCCCTGGTCTTTGTCATCGATGCCAAGGATGAC
TACAACGAGGCGCTGACCAAGTTCAAGAACACAGTGCTGCAGGCCTACAA
AGTGAACAAGCGCATCAAGTTCGAGGTGTTTATACACAAGGTGGATGGAA
TTAGCGACGACTCGAAAATGGAATCGCAGCGGGACATACACCAGCGGTCG
TCGGATGACCTTAACGAGGCTGGCCTCGATCAGATCCACCTGAGTTTCCA
TCTGACCTCCATATACGACCACTCCATCTTCGAGGCCTTCTCCAAGGTGG
TGCAGAAGCTGATTCCCCAGCTTCCGACGCTGGAGAATCTGCTGAACATT
TTTATACCAAACTCCGGAATAGAAAAAGCCTTTCTGTTCGATGTGGTTTC
CAAAATTTACATAGCCACGGACTCGTCACCAGTCGATATGCAGACGTATG
AGCTCTGCTGCGATATGATTGACGTGNTCATTGATCTGTCCAGCATATAC
AGCTC

BO08101.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8707-PA 1158 CG8707-RA 1..839 17..855 4176 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
RagC-D-RA 1558 CG8707-RA 176..1015 16..855 4189 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8162768..8163241 492..19 2370 100 Minus
2R 25286936 2R 8162488..8162708 709..489 1105 100 Minus
2R 25286936 2R 8162286..8162428 852..710 704 99.3 Minus
Blast to na_te.dros performed on 2015-02-12 04:37:42 has no hits.

BO08101.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:54 Download gff for BO08101.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8707-PA 1..839 17..855 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:08 Download gff for BO08101.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8707-PA 1..839 17..855 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:38:28 Download gff for BO08101.5prime
Subject Subject Range Query Range Percent Splice Strand
RagC-D-RA 168..1015 8..855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:48 Download gff for BO08101.5prime
Subject Subject Range Query Range Percent Splice Strand
RagC-D-RA 168..1015 8..855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:48 Download gff for BO08101.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8162284..8162428 710..855 97 <- Minus
2R 8162488..8162706 491..709 100 <- Minus
2R 8162770..8163243 16..490 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:38:28 Download gff for BO08101.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4049789..4049933 710..855 97 <- Minus
arm_2R 4049993..4050211 491..709 100 <- Minus
arm_2R 4050275..4050748 16..490 99   Minus

BO08101.complete Sequence

1189 bp (1189 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631051

> BO08101.complete
GAAGTTATCAGTCGACATGAGCTACGATGATGATGACTATCCGGCGGACA
CGTTCCCCAAGGACTTTGGCTACCGGGCCTACAACCAGGATGGCCTGGAA
CTGGAGCCCAATGCAACGGGCAGCAGCGAGACAAAGCCGCGCATTCTGCT
GATGGGAATGCGCAGATCCGGCAAGAGCTCCATCCAAAAAGTGGTCTTCC
ACAAGATGTCGCCGAACGAGACGCTCTTCCTGGAGTCGACCAGTAAGATC
GTGAAGGACGACATCAACAACTCCAGCTTTGTGCAGTTCCAGATCTGGGA
CTTCCCCGGCCAGATTGACTTCTTCGAGCCGACCTTTGATTCTGACATGA
TCTTTGGAGGCTGTGGAGCCCTGGTCTTTGTCATCGATGCCAAGGATGAC
TACAACGAGGCGCTGACCAAGTTCAAGAACACAGTGCTGCAGGCCTACAA
AGTGAACAAGCGCATCAAGTTCGAGGTGTTTATACACAAGGTGGATGGAA
TTAGCGACGACTCGAAAATGGAATCGCAGCGGGACATACACCAGCGGTCG
TCGGATGACCTTAACGAGGCTGGCCTCGATCAGATCCACCTGAGTTTCCA
TCTGACCTCCATATACGACCACTCCATCTTCGAGGCCTTCTCCAAGGTGG
TGCAGAAGCTGATTCCCCAGCTTCCGACGCTGGAGAATCTGCTGAACATT
TTTATACCAAACTCCGGAATAGAAAAAGCCTTTCTGTTCGATGTGGTTTC
CAAAATTTACATAGCCACGGACTCGTCACCAGTCGATATGCAGACGTATG
AGCTCTGCTGCGATATGATTGACGTGGTCATTGATCTGTCCAGCATATAC
AGCTCCGAAGAAACCGCCTTTGACAGCGGGAGCTCTAGTCTCATCAAGTT
AAACAACAACACGATACTCTACCTGCGGGAGGTGAACAAGTTCCTGGCCC
TGGTCTGCATCCTGCGCGAGGAGAACTTCAACCGGCAGGGCGTCATCGAC
TACAATTTCATCTGTTTCCGCGACGCCATCAGCGAGGTATTCGAGCTGCG
GCTAAAGCGCCAGAAGCAGCTGGAGAACAACGACCAGGACGACGATGATC
TGGTCGATGAGCAGACCCTGATTCGCCATGGCCACGACGCAGGTGGAATT
TCGCGAGCGCAGCCAATTAATGCAAGCTTTCTAGACCAT

BO08101.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:17:36
Subject Length Description Subject Range Query Range Score Percent Strand
RagC-D-RA 1158 CG8707-PA 1..1155 17..1171 5775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
RagC-D-RA 1558 CG8707-RA 176..1331 16..1171 5780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:17:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8162768..8163241 492..19 2370 100 Minus
2R 25286936 2R 8161906..8162227 1171..850 1610 100 Minus
2R 25286936 2R 8162488..8162708 709..489 1105 100 Minus
2R 25286936 2R 8162286..8162428 852..710 715 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:17:35 has no hits.

BO08101.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:26 Download gff for BO08101.complete
Subject Subject Range Query Range Percent Splice Strand
CG8707-RA 1..1158 17..1172 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:36 Download gff for BO08101.complete
Subject Subject Range Query Range Percent Splice Strand
CG8707-RA 181..1349 8..1177 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:18 Download gff for BO08101.complete
Subject Subject Range Query Range Percent Splice Strand
RagC-D-RA 177..1331 17..1173 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:26 Download gff for BO08101.complete
Subject Subject Range Query Range Percent Splice Strand
CG8707-RA 181..1349 8..1177 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:01 Download gff for BO08101.complete
Subject Subject Range Query Range Percent Splice Strand
RagC-D-RA 177..1331 17..1173 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:01 Download gff for BO08101.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8161904..8162224 853..1173 99 <- Minus
2R 8162286..8162428 710..852 100 <- Minus
2R 8162488..8162706 491..709 100 <- Minus
2R 8162770..8163242 17..490 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:18 Download gff for BO08101.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4049409..4049729 853..1173 99 <- Minus
arm_2R 4049791..4049933 710..852 100 <- Minus
arm_2R 4049993..4050211 491..709 100 <- Minus
arm_2R 4050275..4050747 17..490 99   Minus

BO08101.pep Sequence

Translation from 16 to 1189

> BO08101.pep
MSYDDDDYPADTFPKDFGYRAYNQDGLELEPNATGSSETKPRILLMGMRR
SGKSSIQKVVFHKMSPNETLFLESTSKIVKDDINNSSFVQFQIWDFPGQI
DFFEPTFDSDMIFGGCGALVFVIDAKDDYNEALTKFKNTVLQAYKVNKRI
KFEVFIHKVDGISDDSKMESQRDIHQRSSDDLNEAGLDQIHLSFHLTSIY
DHSIFEAFSKVVQKLIPQLPTLENLLNIFIPNSGIEKAFLFDVVSKIYIA
TDSSPVDMQTYELCCDMIDVVIDLSSIYSSEETAFDSGSSSLIKLNNNTI
LYLREVNKFLALVCILREENFNRQGVIDYNFICFRDAISEVFELRLKRQK
QLENNDQDDDDLVDEQTLIRHGHDAGGISRAQPINASFLDH

BO08101.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
RagC-D-PA 385 CG8707-PA 1..385 1..385 1990 100 Plus