Clone BO08102 Report

Search the DGRC for BO08102

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:81
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptGlcAT-S-RB
Protein status:BO08102.pep: validated full length
Sequenced Size:1261

Clone Sequence Records

BO08102.3prime Sequence

805 bp (766 high quality bases) assembled on 2006-01-06

> BO08102.3prime
ATGGTCTAGAAAGCTTGCGCTAAGAATTTTGGAGTGTGGATTTTCCCTTC
CATTTTTGCTGATCAGTGCATTGCGTCCTTCACTTTCCGTTGTACTGGTC
ACGCCCATTAGTTTAAGATTATGAAGCAGAGCGCCCAAGTTAGAACGATC
GTCCAAGTATTTGCTTTCTAATCGAACCATTCCGAGCTTCTTTGACTTTG
TCTGCGTGTGCCAAACCAGAATTTCGGTGCAGTTATTGCCGCGCGGCTCA
ATCAGATTCATTTGAAGGCCAATGCTGCGCAGAAAGAGATCTTCTTCGTA
GCCGGGCTTGTACGGCATATTCACATAGGGATACTGCGCCATGTACTCCA
AATTCACTGCAAAACCGGCCATGTCAACGGGCCAGCGTCGACCGGCAACC
CAGGAGTCCAGGAATGCTACAACCTTGCCTTTGCGCACAACTGGCCCGCT
GACCCCATAATCAGCAATAAGACCTACAGGAAACATGGAAACCCGTTGCG
TTTTCCGGATTTCAGAGAACAAACGCAGATCATAGGTGTTGTCGTCGTCT
CCGAAGTAAAGTATTCCGTTGGTGAGATTATGCTGCCGTATCCACTGCAA
GGCTGCCCTCCGATTTGCCACACCTCGCGGCGCTGGCTTTTCATTCCGGA
ATTTGCTGGGCATCGGGCTGACCATGTGGGTAAAGGGCATACCAAATCGA
TAGAGCAGCGTGTCCATATAGTCATTGCATTTCTCTTGATCATCGGCCAC
CAGCCAGTGCAATCGTGGAATATGGAGCAGCGTGTGCGCCAGACGGGTTA
GTTCT

BO08102.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3881-PA 984 GlcAT-S-RA 195..981 805..19 3935 100 Minus
CG3881-PB 1230 GlcAT-S-RB 441..1227 805..19 3935 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
GlcAT-S-RC 2116 CG3881-RC 1166..1952 805..19 3935 100 Minus
GlcAT-S-RB 2406 CG3881-RB 935..1721 805..19 3935 100 Minus
GlcAT-S-RA 1677 CG3881-RA 206..992 805..19 3935 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9621957..9622309 429..77 1765 100 Minus
2L 23513712 2L 9621478..9621742 693..429 1325 100 Minus
2L 23513712 2L 9621305..9621420 805..690 580 100 Minus
2L 23513712 2L 9622363..9622424 80..19 310 100 Minus
Blast to na_te.dros performed on 2015-02-11 03:05:28 has no hits.

BO08102.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:54 Download gff for BO08102.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3881-PA 195..984 16..805 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:09 Download gff for BO08102.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3881-PB 441..1230 16..805 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:23 Download gff for BO08102.3prime
Subject Subject Range Query Range Percent Splice Strand
GlcAT-S-RA 206..992 19..805 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:25:55 Download gff for BO08102.3prime
Subject Subject Range Query Range Percent Splice Strand
GlcAT-S-RA 206..992 19..805 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:25:55 Download gff for BO08102.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9621305..9621417 693..805 100 -> Minus
2L 9621479..9621741 430..692 100 -> Minus
2L 9621957..9622308 78..429 100 -> Minus
2L 9622366..9622424 19..77 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:23 Download gff for BO08102.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9621305..9621417 693..805 100 -> Minus
arm_2L 9621479..9621741 430..692 100 -> Minus
arm_2L 9621957..9622308 78..429 100 -> Minus
arm_2L 9622366..9622424 19..77 100   Minus

BO08102.5prime Sequence

806 bp (751 high quality bases) assembled on 2006-01-06

> BO08102.5prime
GAAGTTATCAGTCGACATGTCTAGTGCCAGGCTACTCGAGTCGCAGACAT
CCGACGAGGATAACGAGGACATCGAGCGGCGGCCTCACCAGAGCCATTCA
CGCAGCTGCAGCAACAACACCACCCCCACCCATCCACCACATCCCATGGT
CAGGAAGGGGGGTGTGGCCAGGAGGATCTGCCTGATAGGTGGGGCACTGT
TCCTGCTCCTCGTCGCCCTCTGCTACCTCACCCTCAGCGGGGACACTCGC
CTCGGTGGCTCCGAGGATTCGGAGGAGGGATCTCACCATGGATTAGATAG
TATGAATTTCCGGCCATTGAACGAAACCGTTCACATATGCAGCGAGAGTT
ACGAGGATCGACGGCAGTTCATGCAGGATAAGCCCCAATCTGATTACGTC
CAGTTGCCCGTGATATACTTTGTTACTCCAACGTATCCGCGGCGCGAGCA
AATCCCAGAACTAACCCGTCTGGCGCACACGCTGCTCCATATTCCACGAT
TGCACTGGCTGGTGGCCGATGATCAAGAGAAATGCAATGACTATATGGAC
ACGCTGCTCTATCGATTTGGTATGCCCTTTACCCACATGGTCAGCCCGAT
GCCCAGCAAATTCCGGAATGAAAAGCCAGCGCCGCGAGGTGTGGCAAATC
GGAGGGCAGCCTTGCAGTGGATACGGCAGCATAATCTCACCAACGGAATA
CTTTACTTCGGAGACGACGACAACACCTATGATCTGCGTTTGTTCTCTGA
AATCCGGAAAACGCAACGGGTTTCCATGTTTCCTGTAGGTCTTATTGCTG
ATTATG

BO08102.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3881-PB 1230 GlcAT-S-RB 1..790 17..806 3950 100 Plus
CG3881-PA 984 GlcAT-S-RA 33..544 295..806 2560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
GlcAT-S-RB 2406 CG3881-RB 495..1284 17..806 3950 100 Plus
GlcAT-S-RA 1677 CG3881-RA 44..555 295..806 2560 100 Plus
GlcAT-S-RC 2116 CG3881-RC 1006..1515 297..806 2550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9617330..9617609 17..296 1400 100 Plus
2L 23513712 2L 9621143..9621420 295..572 1390 100 Plus
2L 23513712 2L 9621478..9621715 569..806 1190 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:53:54 has no hits.

BO08102.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:55 Download gff for BO08102.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3881-PB 1..790 17..806 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:11 Download gff for BO08102.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3881-PB 1..790 17..806 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:11:49 Download gff for BO08102.5prime
Subject Subject Range Query Range Percent Splice Strand
GlcAT-S-RB 488..1284 8..806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:47 Download gff for BO08102.5prime
Subject Subject Range Query Range Percent Splice Strand
GlcAT-S-RB 488..1284 8..806 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:47 Download gff for BO08102.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9617323..9617609 8..296 98 -> Plus
2L 9621145..9621417 297..569 100 -> Plus
2L 9621479..9621715 570..806 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:11:49 Download gff for BO08102.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9617323..9617609 8..296 98 -> Plus
arm_2L 9621145..9621417 297..569 100 -> Plus
arm_2L 9621479..9621715 570..806 100   Plus

BO08102.complete Sequence

1261 bp (1261 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631052

> BO08102.complete
GAAGTTATCAGTCGACATGTCTAGTGCCAGGCTACTCGAGTCGCAGACAT
CCGACGAGGATAACGAGGACATCGAGCGGCGGCCTCACCAGAGCCATTCA
CGCAGCTGCAGCAACAACACCACCCCCACCCATCCACCACATCCCATGGT
CAGGAAGGGGGGTGTGGCCAGGAGGATCTGCCTGATAGGTGGGGCACTGT
TCCTGCTCCTCGTCGCCCTCTGCTACCTCACCCTCAGCGGGGACACTCGC
CTCGGTGGCTCCGAGGATTCGGAGGAGGGATCTCACCATGGATTAGATAG
TATGAATTTCCGGCCATTGAACGAAACCGTTCACATATGCAGCGAGAGTT
ACGAGGATCGACGGCAGTTCATGCAGGATAAGCCCCAATCTGATTACGTC
CAGTTGCCCGTGATATACTTTGTTACTCCAACGTATCCGCGGCGCGAGCA
AATCCCAGAACTAACCCGTCTGGCGCACACGCTGCTCCATATTCCACGAT
TGCACTGGCTGGTGGCCGATGATCAAGAGAAATGCAATGACTATATGGAC
ACGCTGCTCTATCGATTTGGTATGCCCTTTACCCACATGGTCAGCCCGAT
GCCCAGCAAATTCCGGAATGAAAAGCCAGCGCCGCGAGGTGTGGCAAATC
GGAGGGCAGCCTTGCAGTGGATACGGCAGCATAATCTCACCAACGGAATA
CTTTACTTCGGAGACGACGACAACACCTATGATCTGCGTTTGTTCTCTGA
AATCCGGAAAACGCAACGGGTTTCCATGTTTCCTGTAGGTCTTATTGCTG
ATTATGGGGTCAGCGGGCCAGTTGTGCGCAAAGGCAAGGTTGTAGCATTC
CTGGACTCCTGGGTTGCCGGTCGACGCTGGCCCGTTGACATGGCCGGTTT
TGCAGTGAATTTGGAGTACATGGCGCAGTATCCCTATGTGAATATGCCGT
ACAAGCCCGGCTACGAAGAAGATCTCTTTCTGCGCAGCATTGGCCTTCAA
ATGAATCTGATTGAGCCGCGCGGCAATAACTGCACCGAAATTCTGGTTTG
GCACACGCAGACAAAGTCAAAGAAGCTCGGAATGGTTCGATTAGAAAGCA
AATACTTGGACGATCGTTCTAACTTGGGCGCTCTGCTTCATAATCTTAAA
CTAATGGGCGTGACCAGTACAACGGAAAGTGAAGGACGCAATGCACTGAT
CAGCAAAAATGGAAGGGAAAATCCACACTCCAAAATTCTTAGCGCAAGCT
TTCTAGACCAT

BO08102.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
GlcAT-S-RB 1230 CG3881-PB 1..1227 17..1243 6135 100 Plus
GlcAT-S-RA 984 CG3881-PA 33..981 295..1243 4745 100 Plus
GlcAT-S-RC 1461 CG3881-PC 512..1458 297..1243 4735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
GlcAT-S-RB 2406 CG3881-RB 495..1721 17..1243 6135 100 Plus
GlcAT-S-RA 1677 CG3881-RA 44..992 295..1243 4745 100 Plus
GlcAT-S-RC 2116 CG3881-RC 1006..1952 297..1243 4735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9621957..9622309 833..1185 1765 100 Plus
2L 23513712 2L 9617330..9617609 17..296 1400 100 Plus
2L 23513712 2L 9621143..9621420 295..572 1390 100 Plus
2L 23513712 2L 9621478..9621742 569..833 1325 100 Plus
2L 23513712 2L 9622363..9622424 1182..1243 310 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:14:16 has no hits.

BO08102.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:11 Download gff for BO08102.complete
Subject Subject Range Query Range Percent Splice Strand
GlcAT-S-RB 1..1230 17..1246 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:19 Download gff for BO08102.complete
Subject Subject Range Query Range Percent Splice Strand
GlcAT-S-RB 466..1699 8..1243 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:29 Download gff for BO08102.complete
Subject Subject Range Query Range Percent Splice Strand
GlcAT-S-RB 495..1721 17..1245 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:11 Download gff for BO08102.complete
Subject Subject Range Query Range Percent Splice Strand
GlcAT-S-RB 466..1699 8..1243 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:44 Download gff for BO08102.complete
Subject Subject Range Query Range Percent Splice Strand
GlcAT-S-RB 495..1721 17..1245 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:44 Download gff for BO08102.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9617330..9617609 17..296 100 -> Plus
2L 9621145..9621417 297..569 100 -> Plus
2L 9621479..9621741 570..832 100 -> Plus
2L 9621957..9622308 833..1184 100 -> Plus
2L 9622366..9622424 1185..1245 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:29 Download gff for BO08102.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9617330..9617609 17..296 100 -> Plus
arm_2L 9621145..9621417 297..569 100 -> Plus
arm_2L 9621479..9621741 570..832 100 -> Plus
arm_2L 9621957..9622308 833..1184 100 -> Plus
arm_2L 9622366..9622424 1185..1245 96   Plus

BO08102.pep Sequence

Translation from 16 to 1261

> BO08102.pep
MSSARLLESQTSDEDNEDIERRPHQSHSRSCSNNTTPTHPPHPMVRKGGV
ARRICLIGGALFLLLVALCYLTLSGDTRLGGSEDSEEGSHHGLDSMNFRP
LNETVHICSESYEDRRQFMQDKPQSDYVQLPVIYFVTPTYPRREQIPELT
RLAHTLLHIPRLHWLVADDQEKCNDYMDTLLYRFGMPFTHMVSPMPSKFR
NEKPAPRGVANRRAALQWIRQHNLTNGILYFGDDDNTYDLRLFSEIRKTQ
RVSMFPVGLIADYGVSGPVVRKGKVVAFLDSWVAGRRWPVDMAGFAVNLE
YMAQYPYVNMPYKPGYEEDLFLRSIGLQMNLIEPRGNNCTEILVWHTQTK
SKKLGMVRLESKYLDDRSNLGALLHNLKLMGVTSTTESEGRNALISKNGR
ENPHSKILSASFLDH

BO08102.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
GlcAT-S-PB 409 CG3881-PB 1..409 1..409 2176 100 Plus
GlcAT-S-PA 327 CG3881-PA 12..327 94..409 1685 100 Plus
GlcAT-S-PC 486 CG3881-PC 170..486 93..409 1680 99.4 Plus
GlcAT-P-PE 316 CG6207-PE 68..301 131..363 607 47.7 Plus
GlcAT-P-PB 316 CG6207-PB 68..301 131..363 607 47.7 Plus
GlcAT-S-PC 486 CG3881-PC 1..93 1..93 491 100 Plus