Clone Sequence Records
BO08102.3prime Sequence
805 bp (766 high quality bases) assembled on 2006-01-06
> BO08102.3prime
ATGGTCTAGAAAGCTTGCGCTAAGAATTTTGGAGTGTGGATTTTCCCTTC
CATTTTTGCTGATCAGTGCATTGCGTCCTTCACTTTCCGTTGTACTGGTC
ACGCCCATTAGTTTAAGATTATGAAGCAGAGCGCCCAAGTTAGAACGATC
GTCCAAGTATTTGCTTTCTAATCGAACCATTCCGAGCTTCTTTGACTTTG
TCTGCGTGTGCCAAACCAGAATTTCGGTGCAGTTATTGCCGCGCGGCTCA
ATCAGATTCATTTGAAGGCCAATGCTGCGCAGAAAGAGATCTTCTTCGTA
GCCGGGCTTGTACGGCATATTCACATAGGGATACTGCGCCATGTACTCCA
AATTCACTGCAAAACCGGCCATGTCAACGGGCCAGCGTCGACCGGCAACC
CAGGAGTCCAGGAATGCTACAACCTTGCCTTTGCGCACAACTGGCCCGCT
GACCCCATAATCAGCAATAAGACCTACAGGAAACATGGAAACCCGTTGCG
TTTTCCGGATTTCAGAGAACAAACGCAGATCATAGGTGTTGTCGTCGTCT
CCGAAGTAAAGTATTCCGTTGGTGAGATTATGCTGCCGTATCCACTGCAA
GGCTGCCCTCCGATTTGCCACACCTCGCGGCGCTGGCTTTTCATTCCGGA
ATTTGCTGGGCATCGGGCTGACCATGTGGGTAAAGGGCATACCAAATCGA
TAGAGCAGCGTGTCCATATAGTCATTGCATTTCTCTTGATCATCGGCCAC
CAGCCAGTGCAATCGTGGAATATGGAGCAGCGTGTGCGCCAGACGGGTTA
GTTCT
BO08102.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3881-PA | 984 | GlcAT-S-RA | 195..981 | 805..19 | 3935 | 100 | Minus |
CG3881-PB | 1230 | GlcAT-S-RB | 441..1227 | 805..19 | 3935 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GlcAT-S-RC | 2116 | CG3881-RC | 1166..1952 | 805..19 | 3935 | 100 | Minus |
GlcAT-S-RB | 2406 | CG3881-RB | 935..1721 | 805..19 | 3935 | 100 | Minus |
GlcAT-S-RA | 1677 | CG3881-RA | 206..992 | 805..19 | 3935 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9621957..9622309 | 429..77 | 1765 | 100 | Minus |
2L | 23513712 | 2L | 9621478..9621742 | 693..429 | 1325 | 100 | Minus |
2L | 23513712 | 2L | 9621305..9621420 | 805..690 | 580 | 100 | Minus |
2L | 23513712 | 2L | 9622363..9622424 | 80..19 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:05:28 has no hits.
BO08102.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:54 Download gff for
BO08102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3881-PA | 195..984 | 16..805 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:09 Download gff for
BO08102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3881-PB | 441..1230 | 16..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:23 Download gff for
BO08102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-S-RA | 206..992 | 19..805 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:25:55 Download gff for
BO08102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-S-RA | 206..992 | 19..805 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:25:55 Download gff for
BO08102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9621305..9621417 | 693..805 | 100 | -> | Minus |
2L | 9621479..9621741 | 430..692 | 100 | -> | Minus |
2L | 9621957..9622308 | 78..429 | 100 | -> | Minus |
2L | 9622366..9622424 | 19..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:23 Download gff for
BO08102.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9621305..9621417 | 693..805 | 100 | -> | Minus |
arm_2L | 9621479..9621741 | 430..692 | 100 | -> | Minus |
arm_2L | 9621957..9622308 | 78..429 | 100 | -> | Minus |
arm_2L | 9622366..9622424 | 19..77 | 100 | | Minus |
BO08102.5prime Sequence
806 bp (751 high quality bases) assembled on 2006-01-06
> BO08102.5prime
GAAGTTATCAGTCGACATGTCTAGTGCCAGGCTACTCGAGTCGCAGACAT
CCGACGAGGATAACGAGGACATCGAGCGGCGGCCTCACCAGAGCCATTCA
CGCAGCTGCAGCAACAACACCACCCCCACCCATCCACCACATCCCATGGT
CAGGAAGGGGGGTGTGGCCAGGAGGATCTGCCTGATAGGTGGGGCACTGT
TCCTGCTCCTCGTCGCCCTCTGCTACCTCACCCTCAGCGGGGACACTCGC
CTCGGTGGCTCCGAGGATTCGGAGGAGGGATCTCACCATGGATTAGATAG
TATGAATTTCCGGCCATTGAACGAAACCGTTCACATATGCAGCGAGAGTT
ACGAGGATCGACGGCAGTTCATGCAGGATAAGCCCCAATCTGATTACGTC
CAGTTGCCCGTGATATACTTTGTTACTCCAACGTATCCGCGGCGCGAGCA
AATCCCAGAACTAACCCGTCTGGCGCACACGCTGCTCCATATTCCACGAT
TGCACTGGCTGGTGGCCGATGATCAAGAGAAATGCAATGACTATATGGAC
ACGCTGCTCTATCGATTTGGTATGCCCTTTACCCACATGGTCAGCCCGAT
GCCCAGCAAATTCCGGAATGAAAAGCCAGCGCCGCGAGGTGTGGCAAATC
GGAGGGCAGCCTTGCAGTGGATACGGCAGCATAATCTCACCAACGGAATA
CTTTACTTCGGAGACGACGACAACACCTATGATCTGCGTTTGTTCTCTGA
AATCCGGAAAACGCAACGGGTTTCCATGTTTCCTGTAGGTCTTATTGCTG
ATTATG
BO08102.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3881-PB | 1230 | GlcAT-S-RB | 1..790 | 17..806 | 3950 | 100 | Plus |
CG3881-PA | 984 | GlcAT-S-RA | 33..544 | 295..806 | 2560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GlcAT-S-RB | 2406 | CG3881-RB | 495..1284 | 17..806 | 3950 | 100 | Plus |
GlcAT-S-RA | 1677 | CG3881-RA | 44..555 | 295..806 | 2560 | 100 | Plus |
GlcAT-S-RC | 2116 | CG3881-RC | 1006..1515 | 297..806 | 2550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9617330..9617609 | 17..296 | 1400 | 100 | Plus |
2L | 23513712 | 2L | 9621143..9621420 | 295..572 | 1390 | 100 | Plus |
2L | 23513712 | 2L | 9621478..9621715 | 569..806 | 1190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:53:54 has no hits.
BO08102.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:55 Download gff for
BO08102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3881-PB | 1..790 | 17..806 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:11 Download gff for
BO08102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3881-PB | 1..790 | 17..806 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:11:49 Download gff for
BO08102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-S-RB | 488..1284 | 8..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:47 Download gff for
BO08102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-S-RB | 488..1284 | 8..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:47 Download gff for
BO08102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9617323..9617609 | 8..296 | 98 | -> | Plus |
2L | 9621145..9621417 | 297..569 | 100 | -> | Plus |
2L | 9621479..9621715 | 570..806 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:11:49 Download gff for
BO08102.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9617323..9617609 | 8..296 | 98 | -> | Plus |
arm_2L | 9621145..9621417 | 297..569 | 100 | -> | Plus |
arm_2L | 9621479..9621715 | 570..806 | 100 | | Plus |
BO08102.complete Sequence
1261 bp (1261 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631052
> BO08102.complete
GAAGTTATCAGTCGACATGTCTAGTGCCAGGCTACTCGAGTCGCAGACAT
CCGACGAGGATAACGAGGACATCGAGCGGCGGCCTCACCAGAGCCATTCA
CGCAGCTGCAGCAACAACACCACCCCCACCCATCCACCACATCCCATGGT
CAGGAAGGGGGGTGTGGCCAGGAGGATCTGCCTGATAGGTGGGGCACTGT
TCCTGCTCCTCGTCGCCCTCTGCTACCTCACCCTCAGCGGGGACACTCGC
CTCGGTGGCTCCGAGGATTCGGAGGAGGGATCTCACCATGGATTAGATAG
TATGAATTTCCGGCCATTGAACGAAACCGTTCACATATGCAGCGAGAGTT
ACGAGGATCGACGGCAGTTCATGCAGGATAAGCCCCAATCTGATTACGTC
CAGTTGCCCGTGATATACTTTGTTACTCCAACGTATCCGCGGCGCGAGCA
AATCCCAGAACTAACCCGTCTGGCGCACACGCTGCTCCATATTCCACGAT
TGCACTGGCTGGTGGCCGATGATCAAGAGAAATGCAATGACTATATGGAC
ACGCTGCTCTATCGATTTGGTATGCCCTTTACCCACATGGTCAGCCCGAT
GCCCAGCAAATTCCGGAATGAAAAGCCAGCGCCGCGAGGTGTGGCAAATC
GGAGGGCAGCCTTGCAGTGGATACGGCAGCATAATCTCACCAACGGAATA
CTTTACTTCGGAGACGACGACAACACCTATGATCTGCGTTTGTTCTCTGA
AATCCGGAAAACGCAACGGGTTTCCATGTTTCCTGTAGGTCTTATTGCTG
ATTATGGGGTCAGCGGGCCAGTTGTGCGCAAAGGCAAGGTTGTAGCATTC
CTGGACTCCTGGGTTGCCGGTCGACGCTGGCCCGTTGACATGGCCGGTTT
TGCAGTGAATTTGGAGTACATGGCGCAGTATCCCTATGTGAATATGCCGT
ACAAGCCCGGCTACGAAGAAGATCTCTTTCTGCGCAGCATTGGCCTTCAA
ATGAATCTGATTGAGCCGCGCGGCAATAACTGCACCGAAATTCTGGTTTG
GCACACGCAGACAAAGTCAAAGAAGCTCGGAATGGTTCGATTAGAAAGCA
AATACTTGGACGATCGTTCTAACTTGGGCGCTCTGCTTCATAATCTTAAA
CTAATGGGCGTGACCAGTACAACGGAAAGTGAAGGACGCAATGCACTGAT
CAGCAAAAATGGAAGGGAAAATCCACACTCCAAAATTCTTAGCGCAAGCT
TTCTAGACCAT
BO08102.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:14:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GlcAT-S-RB | 1230 | CG3881-PB | 1..1227 | 17..1243 | 6135 | 100 | Plus |
GlcAT-S-RA | 984 | CG3881-PA | 33..981 | 295..1243 | 4745 | 100 | Plus |
GlcAT-S-RC | 1461 | CG3881-PC | 512..1458 | 297..1243 | 4735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GlcAT-S-RB | 2406 | CG3881-RB | 495..1721 | 17..1243 | 6135 | 100 | Plus |
GlcAT-S-RA | 1677 | CG3881-RA | 44..992 | 295..1243 | 4745 | 100 | Plus |
GlcAT-S-RC | 2116 | CG3881-RC | 1006..1952 | 297..1243 | 4735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9621957..9622309 | 833..1185 | 1765 | 100 | Plus |
2L | 23513712 | 2L | 9617330..9617609 | 17..296 | 1400 | 100 | Plus |
2L | 23513712 | 2L | 9621143..9621420 | 295..572 | 1390 | 100 | Plus |
2L | 23513712 | 2L | 9621478..9621742 | 569..833 | 1325 | 100 | Plus |
2L | 23513712 | 2L | 9622363..9622424 | 1182..1243 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:14:16 has no hits.
BO08102.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:11 Download gff for
BO08102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-S-RB | 1..1230 | 17..1246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:19 Download gff for
BO08102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-S-RB | 466..1699 | 8..1243 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:29 Download gff for
BO08102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-S-RB | 495..1721 | 17..1245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:11 Download gff for
BO08102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-S-RB | 466..1699 | 8..1243 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:44 Download gff for
BO08102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-S-RB | 495..1721 | 17..1245 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:44 Download gff for
BO08102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9617330..9617609 | 17..296 | 100 | -> | Plus |
2L | 9621145..9621417 | 297..569 | 100 | -> | Plus |
2L | 9621479..9621741 | 570..832 | 100 | -> | Plus |
2L | 9621957..9622308 | 833..1184 | 100 | -> | Plus |
2L | 9622366..9622424 | 1185..1245 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:29 Download gff for
BO08102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9617330..9617609 | 17..296 | 100 | -> | Plus |
arm_2L | 9621145..9621417 | 297..569 | 100 | -> | Plus |
arm_2L | 9621479..9621741 | 570..832 | 100 | -> | Plus |
arm_2L | 9621957..9622308 | 833..1184 | 100 | -> | Plus |
arm_2L | 9622366..9622424 | 1185..1245 | 96 | | Plus |
BO08102.pep Sequence
Translation from 16 to 1261
> BO08102.pep
MSSARLLESQTSDEDNEDIERRPHQSHSRSCSNNTTPTHPPHPMVRKGGV
ARRICLIGGALFLLLVALCYLTLSGDTRLGGSEDSEEGSHHGLDSMNFRP
LNETVHICSESYEDRRQFMQDKPQSDYVQLPVIYFVTPTYPRREQIPELT
RLAHTLLHIPRLHWLVADDQEKCNDYMDTLLYRFGMPFTHMVSPMPSKFR
NEKPAPRGVANRRAALQWIRQHNLTNGILYFGDDDNTYDLRLFSEIRKTQ
RVSMFPVGLIADYGVSGPVVRKGKVVAFLDSWVAGRRWPVDMAGFAVNLE
YMAQYPYVNMPYKPGYEEDLFLRSIGLQMNLIEPRGNNCTEILVWHTQTK
SKKLGMVRLESKYLDDRSNLGALLHNLKLMGVTSTTESEGRNALISKNGR
ENPHSKILSASFLDH
BO08102.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GlcAT-S-PB | 409 | CG3881-PB | 1..409 | 1..409 | 2176 | 100 | Plus |
GlcAT-S-PA | 327 | CG3881-PA | 12..327 | 94..409 | 1685 | 100 | Plus |
GlcAT-S-PC | 486 | CG3881-PC | 170..486 | 93..409 | 1680 | 99.4 | Plus |
GlcAT-P-PE | 316 | CG6207-PE | 68..301 | 131..363 | 607 | 47.7 | Plus |
GlcAT-P-PB | 316 | CG6207-PB | 68..301 | 131..363 | 607 | 47.7 | Plus |
GlcAT-S-PC | 486 | CG3881-PC | 1..93 | 1..93 | 491 | 100 | Plus |