Clone BO08103 Report

Search the DGRC for BO08103

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:81
Well:3
Vector:pDNR-Dual
Associated Gene/Transcriptdpr20-RA
Protein status:BO08103.pep: validated full length
Sequenced Size:1609

Clone Sequence Records

BO08103.3prime Sequence

921 bp (794 high quality bases) assembled on 2006-01-06

> BO08103.3prime
ATGGTCTAGAAAGCTTGCGCTAAACTCCCCCCTTAGACTATTTAGCACAA
GGAGTGCCATTGCATGCAGCATCACCATATTCCACCACGTGCTGTGCCAT
CCAACCGCACCACCATGATGCAGTTCGGCGAAGCTTTCGCCGTTCAGAAT
GTGAACCACTATGGTGAAGTTCTGGAACTCACTGATGGAGCATGTGTAGT
TGCCGGAATCCGTTTTACTGATCTTCGCTATCGAGAGCGTCGAGTTGGCT
CCATCCTCCATCAGTTCGGTTTTGACGCTCACTCCCCCGCGAGTAACGTC
GTAGTTAAGGATGTTGTCCATGTGCTTCCAGAAGACCACGGAACTGGTCA
TGGCCACGTTTCGCACCACACAGGAGAGCTGTAGCGTGGAATCGATCTCG
TAGTACTTCTCCTGCAGCGGATCACCCACCTCGTCCACTATCATCACTTT
CGGAGCATTAACGTGCAGGTTGATTTGAATGACGCGTGGCGGATGCGTTG
AGATCTGGCACTCGTAGATAGCCTCGTCGTCCTTCTTCACATTGGTTATC
TTCAGTCGCCAGTTGTTTGGGTACTGGAACTCCATCTTGTAGCGCTTATC
ACCCGTATACGTGTGCATGCCCACTGTCAGCAGGTCCAGGGCGTTGCCAT
TGTCCTTGCCCTCGTCCTGCGTGTTGTGCCGCACCCAAGAGACAGTCTTA
TCCTGCAGCAGTGAGATCCTGCAGTTCAGGTGAATGCTGGAGCCCGCCTG
CACGGTGAGATTGGTGGCCTGACCAATCCGCTGCACATCCTCGAAGTGGG
GGCCATACCTCTGATCGTGATGATGGTGCTTATTGGCCGAAGAGAACGTG
TCGAAGATGTAGTTCAGCATGGGTGCGTCCGTCTTCTGGCCCCTGGACAG
TGGATGCTTGCTGTCCACTTG

BO08103.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG12191-PA 1578 dpr20-RA 676..1575 918..19 4475 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
dpr20-RA 2717 CG12191-RA 1254..2153 918..19 4485 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 853906..854143 456..693 1190 100 Plus
3L 28110227 3L 853670..853848 278..456 895 100 Plus
3L 28110227 3L 853468..853607 140..279 700 100 Plus
3L 28110227 3L 853284..853406 19..141 615 100 Plus
3L 28110227 3L 854294..854412 692..810 595 100 Plus
3L 28110227 3L 854585..854696 807..918 545 99.1 Plus
Blast to na_te.dros performed on 2015-02-12 04:37:49 has no hits.

BO08103.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:56 Download gff for BO08103.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr20-PA 672..1578 15..921 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:12 Download gff for BO08103.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12191-PA 672..1578 15..921 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:38:30 Download gff for BO08103.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr20-RA 1250..2163 8..921 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:58 Download gff for BO08103.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr20-RA 1250..2163 8..921 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:58 Download gff for BO08103.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 853274..853405 8..140 96 <- Plus
3L 853469..853605 141..277 100 <- Plus
3L 853670..853847 278..455 100 <- Plus
3L 853906..854143 456..693 100 <- Plus
3L 854296..854410 694..808 100 <- Plus
3L 854587..854700 809..921 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:38:30 Download gff for BO08103.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 853469..853605 141..277 100 <- Plus
arm_3L 853670..853847 278..455 100 <- Plus
arm_3L 853274..853405 8..140 96 <- Plus
arm_3L 853906..854143 456..693 100 <- Plus
arm_3L 854296..854410 694..808 100 <- Plus
arm_3L 854587..854700 809..921 98   Plus

BO08103.5prime Sequence

921 bp (837 high quality bases) assembled on 2006-01-06

> BO08103.5prime
GAAGTTATCAGTCGACATGCGTTTGAATGAACCAGCTGCAAGAACGCGAC
CCAGAACTAAATCAACGACAGACGCCACCAAGTTCTCATCATCCAGGGGT
GACCTTCACCTCGATTGCGCCGTGCCCAACCTGATCAGGCTGCTCCTCCT
CATCGCAACGATCATGGGCTCCGGACTCGTCCAGGCCAAGACAATTTACG
ACTCGGTTAACATGATTCAGTCGCTGGATGCCTTGGTTGAGCCACGGGAA
ACGACCAAGGTTCCGCTGCAAACAACGCCAGCCACGCCCCCCACTGCCCA
CGCCCACATCCACAACCAGGTGTCCACGTTACGGAGTAGTTACGAGGATT
CAGATGATGGCGTAGATGGCGATTATGTCATCCCAGAGAGCCAGACATCT
ACGGTGGCGATCCTGGATCAGGATTCCTCCATGAAGGGCCAGGACATGGA
ATCGTTATCCCTGCAGGCAGGATCGGGCACAGTTTCACCAAAGAGCAGCC
CCGATTCGTCCGGACACAAGAAGAACGCCTCCTTCCAGCAGATTGGCAGC
CAGAATGTTAACGCCTTAGTGCCGGCCACAGTGGCCACCACTTCATCCGG
CCTCCCGTCGAGCAGCAACGCCTCCTTGGCCACGCCCACGGAGCCGGCGA
GGAACCGGAGCACCGGACTCGTCCGCAACTCCGCTGTCAAGGTGGACAGC
AAGCATCCACTGTCCAAGGGCCAGAAGACGGACGCACCCATGCTGAACTA
CATCTTCGACACGTTCTCTTCGGCCAATAAGCACCATCATCACGATCAGA
GGTATGGCCCCCACTTCGAGGATGTGCAGCGGATTGGTCAGGCCACCAAT
CTCACCGTGCANGCGGGCTCCAGCATTCACCTGAACTGCAAGATCTCACT
GCTGCAGGATAAGACTGTCTC

BO08103.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG12191-PA 1578 dpr20-RA 1..905 17..921 4481 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
dpr20-RA 2717 CG12191-RA 579..1483 17..921 4499 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 854585..855044 803..344 2300 100 Minus
3L 28110227 3L 856343..856670 344..17 1640 100 Minus
3L 28110227 3L 854294..854412 918..800 569 98.3 Minus
Blast to na_te.dros performed on 2015-02-12 15:45:57 has no hits.

BO08103.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:57 Download gff for BO08103.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr20-PA 1..905 17..921 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:13 Download gff for BO08103.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12191-PA 1..905 17..921 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:09:23 Download gff for BO08103.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr20-RA 579..1483 17..921 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:22:48 Download gff for BO08103.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr20-RA 579..1483 17..921 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:22:48 Download gff for BO08103.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 854291..854410 802..921 95 <- Minus
3L 854587..855043 345..801 100 <- Minus
3L 856343..856670 17..344 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:09:23 Download gff for BO08103.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 854291..854410 802..921 95 <- Minus
arm_3L 854587..855043 345..801 100 <- Minus
arm_3L 856343..856670 17..344 100   Minus

BO08103.complete Sequence

1609 bp (1609 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631053

> BO08103.complete
GAAGTTATCAGTCGACATGCGTTTGAATGAACCAGCTGCAAGAACGCGAC
CCAGAACTAAATCAACGACAGACGCCACCAAGTTCTCATCATCCAGGGGT
GACCTTCACCTCGATTGCGCCGTGCCCAACCTGATCAGGCTGCTCCTCCT
CATCGCAACGATCATGGGCTCCGGACTCGTCCAGGCCAAGACAATTTACG
ACTCGGTTAACATGATTCAGTCGCTGGATGCCTTGGTTGAGCCACGGGAA
ACGACCAAGGTTCCGCTGCAAACAACGCCAGCCACGCCCCCCACTGCCCA
CGCCCACATCCACAACCAGGTGTCCACGTTACGGAGTAGTTACGAGGATT
CAGATGATGGCGTAGATGGCGATTATGTCATCCCAGAGAGCCAGACATCT
ACGGTGGCGATCCTGGATCAGGATTCCTCCATGAAGGGCCAGGACATGGA
ATCGTTATCCCTGCAGGCAGGATCGGGCACAGTTTCACCAAAGAGCAGCC
CCGATTCGTCCGGACACAAGAAGAACGCCTCCTTCCAGCAGATTGGCAGC
CAGAATGTTAACGCCTTAGTGCCGGCCACAGTGGCCACCACTTCATCCGG
CCTCCCGTCGAGCAGCAACGCCTCCTTGGCCACGCCCACGGAGCCGGCGA
GGAACCGGAGCACCGGACTCGTCCGCAACTCCGCTGTCAAGGTGGACAGC
AAGCATCCACTGTCCAAGGGCCAGAAGACGGACGCACCCATGCTGAACTA
CATCTTCGACACGTTCTCTTCGGCCAATAAGCACCATCATCACGATCAGA
GGTATGGCCCCCACTTCGAGGATGTGCAGCGGATTGGTCAGGCCACCAAT
CTCACCGTGCAGGCGGGCTCCAGCATTCACCTGAACTGCAGGATCTCACT
GCTGCAGGATAAGACTGTCTCTTGGGTGCGGCACAACACGCAGGACGAGG
GCAAGGACAATGGCAACGCCCTGGACCTGCTGACAGTGGGCATGCACACG
TATACGGGTGATAAGCGCTACAAGATGGAGTTCCAGTACCCAAACAACTG
GCGACTGAAGATAACCAATGTGAAGAAGGACGACGAGGCTATCTACGAGT
GCCAGATCTCAACGCATCCGCCACGCGTCATTCAAATCAACCTGCACGTT
AATGCTCCGAAAGTGATGATAGTGGACGAGGTGGGTGATCCGCTGCAGGA
GAAGTACTACGAGATCGATTCCACGCTACAGCTCTCCTGTGTGGTGCGAA
ACGTGGCCATGACCAGTTCCGTGGTCTTCTGGAAGCACATGGACAACATC
CTTAACTACGACGTTACTCGCGGGGGAGTGAGCGTCAAAACCGAACTGAT
GGAGGATGGAGCCAACTCGACGCTCTCGATAGCGAAGATCAGTAAAACGG
ATTCCGGCAACTACACATGCTCCATCAGTGAGTTCCAGAACTTCACCATA
GTGGTTCACATTCTGAACGGCGAAAGCTTCGCCGAACTGCATCATGGTGG
TGCGGTTGGATGGCACAGCACGTGGTGGAATATGGTGATGCTGCATGCAA
TGGCACTCCTTGTGCTAAATAGTCTAAGGGGGGAGTTTAGCGCAAGCTTT
CTAGACCAT

BO08103.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
dpr20-RA 1578 CG12191-PA 1..1575 17..1591 7875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
dpr20-RA 2717 CG12191-RA 579..2153 17..1591 7875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 854585..855044 803..344 2300 100 Minus
3L 28110227 3L 856343..856670 344..17 1640 100 Minus
3L 28110227 3L 853906..854143 1154..917 1190 100 Minus
3L 28110227 3L 853670..853848 1332..1154 895 100 Minus
3L 28110227 3L 853468..853607 1470..1331 700 100 Minus
3L 28110227 3L 853284..853406 1591..1469 615 100 Minus
3L 28110227 3L 854294..854412 918..800 595 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:04:11 has no hits.

BO08103.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:12 Download gff for BO08103.complete
Subject Subject Range Query Range Percent Splice Strand
dpr20-RA 1..1578 17..1595 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:21 Download gff for BO08103.complete
Subject Subject Range Query Range Percent Splice Strand
dpr20-RA 570..2154 17..1602 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:32 Download gff for BO08103.complete
Subject Subject Range Query Range Percent Splice Strand
dpr20-RA 579..2153 17..1593 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:13 Download gff for BO08103.complete
Subject Subject Range Query Range Percent Splice Strand
dpr20-RA 570..2154 17..1602 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:38 Download gff for BO08103.complete
Subject Subject Range Query Range Percent Splice Strand
dpr20-RA 579..2153 17..1593 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:38 Download gff for BO08103.complete
Subject Subject Range Query Range Percent Splice Strand
3L 853906..854143 917..1154 100 <- Minus
3L 854296..854410 802..916 100 <- Minus
3L 853282..853405 1470..1593 98 <- Minus
3L 853469..853605 1333..1469 100 <- Minus
3L 853670..853847 1155..1332 100 <- Minus
3L 854587..855043 345..801 100 <- Minus
3L 856343..856670 17..344 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:32 Download gff for BO08103.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 853282..853405 1470..1593 98 <- Minus
arm_3L 853469..853605 1333..1469 100 <- Minus
arm_3L 853670..853847 1155..1332 100 <- Minus
arm_3L 853906..854143 917..1154 100 <- Minus
arm_3L 854296..854410 802..916 100 <- Minus
arm_3L 854587..855043 345..801 100 <- Minus
arm_3L 856343..856670 17..344 100   Minus

BO08103.pep Sequence

Translation from 16 to 1609

> BO08103.pep
MRLNEPAARTRPRTKSTTDATKFSSSRGDLHLDCAVPNLIRLLLLIATIM
GSGLVQAKTIYDSVNMIQSLDALVEPRETTKVPLQTTPATPPTAHAHIHN
QVSTLRSSYEDSDDGVDGDYVIPESQTSTVAILDQDSSMKGQDMESLSLQ
AGSGTVSPKSSPDSSGHKKNASFQQIGSQNVNALVPATVATTSSGLPSSS
NASLATPTEPARNRSTGLVRNSAVKVDSKHPLSKGQKTDAPMLNYIFDTF
SSANKHHHHDQRYGPHFEDVQRIGQATNLTVQAGSSIHLNCRISLLQDKT
VSWVRHNTQDEGKDNGNALDLLTVGMHTYTGDKRYKMEFQYPNNWRLKIT
NVKKDDEAIYECQISTHPPRVIQINLHVNAPKVMIVDEVGDPLQEKYYEI
DSTLQLSCVVRNVAMTSSVVFWKHMDNILNYDVTRGGVSVKTELMEDGAN
STLSIAKISKTDSGNYTCSISEFQNFTIVVHILNGESFAELHHGGAVGWH
STWWNMVMLHAMALLVLNSLRGEFSASFLDH

BO08103.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
dpr20-PA 525 CG12191-PA 1..525 1..525 2723 100 Plus
dpr14-PB 340 CG10946-PB 83..317 278..520 527 41.6 Plus
dpr14-PA 340 CG10946-PA 83..317 278..520 527 41.6 Plus
dpr6-PC 390 CG14162-PC 82..302 278..514 358 36.6 Plus
dpr6-PE 283 CG14162-PE 82..280 278..491 339 37.2 Plus