Clone Sequence Records
BO08103.3prime Sequence
921 bp (794 high quality bases) assembled on 2006-01-06
> BO08103.3prime
ATGGTCTAGAAAGCTTGCGCTAAACTCCCCCCTTAGACTATTTAGCACAA
GGAGTGCCATTGCATGCAGCATCACCATATTCCACCACGTGCTGTGCCAT
CCAACCGCACCACCATGATGCAGTTCGGCGAAGCTTTCGCCGTTCAGAAT
GTGAACCACTATGGTGAAGTTCTGGAACTCACTGATGGAGCATGTGTAGT
TGCCGGAATCCGTTTTACTGATCTTCGCTATCGAGAGCGTCGAGTTGGCT
CCATCCTCCATCAGTTCGGTTTTGACGCTCACTCCCCCGCGAGTAACGTC
GTAGTTAAGGATGTTGTCCATGTGCTTCCAGAAGACCACGGAACTGGTCA
TGGCCACGTTTCGCACCACACAGGAGAGCTGTAGCGTGGAATCGATCTCG
TAGTACTTCTCCTGCAGCGGATCACCCACCTCGTCCACTATCATCACTTT
CGGAGCATTAACGTGCAGGTTGATTTGAATGACGCGTGGCGGATGCGTTG
AGATCTGGCACTCGTAGATAGCCTCGTCGTCCTTCTTCACATTGGTTATC
TTCAGTCGCCAGTTGTTTGGGTACTGGAACTCCATCTTGTAGCGCTTATC
ACCCGTATACGTGTGCATGCCCACTGTCAGCAGGTCCAGGGCGTTGCCAT
TGTCCTTGCCCTCGTCCTGCGTGTTGTGCCGCACCCAAGAGACAGTCTTA
TCCTGCAGCAGTGAGATCCTGCAGTTCAGGTGAATGCTGGAGCCCGCCTG
CACGGTGAGATTGGTGGCCTGACCAATCCGCTGCACATCCTCGAAGTGGG
GGCCATACCTCTGATCGTGATGATGGTGCTTATTGGCCGAAGAGAACGTG
TCGAAGATGTAGTTCAGCATGGGTGCGTCCGTCTTCTGGCCCCTGGACAG
TGGATGCTTGCTGTCCACTTG
BO08103.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12191-PA | 1578 | dpr20-RA | 676..1575 | 918..19 | 4475 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:37:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr20-RA | 2717 | CG12191-RA | 1254..2153 | 918..19 | 4485 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 853906..854143 | 456..693 | 1190 | 100 | Plus |
3L | 28110227 | 3L | 853670..853848 | 278..456 | 895 | 100 | Plus |
3L | 28110227 | 3L | 853468..853607 | 140..279 | 700 | 100 | Plus |
3L | 28110227 | 3L | 853284..853406 | 19..141 | 615 | 100 | Plus |
3L | 28110227 | 3L | 854294..854412 | 692..810 | 595 | 100 | Plus |
3L | 28110227 | 3L | 854585..854696 | 807..918 | 545 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:37:49 has no hits.
BO08103.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:56 Download gff for
BO08103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr20-PA | 672..1578 | 15..921 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:12 Download gff for
BO08103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12191-PA | 672..1578 | 15..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:38:30 Download gff for
BO08103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr20-RA | 1250..2163 | 8..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:58 Download gff for
BO08103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr20-RA | 1250..2163 | 8..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:58 Download gff for
BO08103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 853274..853405 | 8..140 | 96 | <- | Plus |
3L | 853469..853605 | 141..277 | 100 | <- | Plus |
3L | 853670..853847 | 278..455 | 100 | <- | Plus |
3L | 853906..854143 | 456..693 | 100 | <- | Plus |
3L | 854296..854410 | 694..808 | 100 | <- | Plus |
3L | 854587..854700 | 809..921 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:38:30 Download gff for
BO08103.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 853469..853605 | 141..277 | 100 | <- | Plus |
arm_3L | 853670..853847 | 278..455 | 100 | <- | Plus |
arm_3L | 853274..853405 | 8..140 | 96 | <- | Plus |
arm_3L | 853906..854143 | 456..693 | 100 | <- | Plus |
arm_3L | 854296..854410 | 694..808 | 100 | <- | Plus |
arm_3L | 854587..854700 | 809..921 | 98 | | Plus |
BO08103.5prime Sequence
921 bp (837 high quality bases) assembled on 2006-01-06
> BO08103.5prime
GAAGTTATCAGTCGACATGCGTTTGAATGAACCAGCTGCAAGAACGCGAC
CCAGAACTAAATCAACGACAGACGCCACCAAGTTCTCATCATCCAGGGGT
GACCTTCACCTCGATTGCGCCGTGCCCAACCTGATCAGGCTGCTCCTCCT
CATCGCAACGATCATGGGCTCCGGACTCGTCCAGGCCAAGACAATTTACG
ACTCGGTTAACATGATTCAGTCGCTGGATGCCTTGGTTGAGCCACGGGAA
ACGACCAAGGTTCCGCTGCAAACAACGCCAGCCACGCCCCCCACTGCCCA
CGCCCACATCCACAACCAGGTGTCCACGTTACGGAGTAGTTACGAGGATT
CAGATGATGGCGTAGATGGCGATTATGTCATCCCAGAGAGCCAGACATCT
ACGGTGGCGATCCTGGATCAGGATTCCTCCATGAAGGGCCAGGACATGGA
ATCGTTATCCCTGCAGGCAGGATCGGGCACAGTTTCACCAAAGAGCAGCC
CCGATTCGTCCGGACACAAGAAGAACGCCTCCTTCCAGCAGATTGGCAGC
CAGAATGTTAACGCCTTAGTGCCGGCCACAGTGGCCACCACTTCATCCGG
CCTCCCGTCGAGCAGCAACGCCTCCTTGGCCACGCCCACGGAGCCGGCGA
GGAACCGGAGCACCGGACTCGTCCGCAACTCCGCTGTCAAGGTGGACAGC
AAGCATCCACTGTCCAAGGGCCAGAAGACGGACGCACCCATGCTGAACTA
CATCTTCGACACGTTCTCTTCGGCCAATAAGCACCATCATCACGATCAGA
GGTATGGCCCCCACTTCGAGGATGTGCAGCGGATTGGTCAGGCCACCAAT
CTCACCGTGCANGCGGGCTCCAGCATTCACCTGAACTGCAAGATCTCACT
GCTGCAGGATAAGACTGTCTC
BO08103.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12191-PA | 1578 | dpr20-RA | 1..905 | 17..921 | 4481 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:45:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr20-RA | 2717 | CG12191-RA | 579..1483 | 17..921 | 4499 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 854585..855044 | 803..344 | 2300 | 100 | Minus |
3L | 28110227 | 3L | 856343..856670 | 344..17 | 1640 | 100 | Minus |
3L | 28110227 | 3L | 854294..854412 | 918..800 | 569 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:45:57 has no hits.
BO08103.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:37:57 Download gff for
BO08103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr20-PA | 1..905 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:13 Download gff for
BO08103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12191-PA | 1..905 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:09:23 Download gff for
BO08103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr20-RA | 579..1483 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:22:48 Download gff for
BO08103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr20-RA | 579..1483 | 17..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:22:48 Download gff for
BO08103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 854291..854410 | 802..921 | 95 | <- | Minus |
3L | 854587..855043 | 345..801 | 100 | <- | Minus |
3L | 856343..856670 | 17..344 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:09:23 Download gff for
BO08103.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 854291..854410 | 802..921 | 95 | <- | Minus |
arm_3L | 854587..855043 | 345..801 | 100 | <- | Minus |
arm_3L | 856343..856670 | 17..344 | 100 | | Minus |
BO08103.complete Sequence
1609 bp (1609 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631053
> BO08103.complete
GAAGTTATCAGTCGACATGCGTTTGAATGAACCAGCTGCAAGAACGCGAC
CCAGAACTAAATCAACGACAGACGCCACCAAGTTCTCATCATCCAGGGGT
GACCTTCACCTCGATTGCGCCGTGCCCAACCTGATCAGGCTGCTCCTCCT
CATCGCAACGATCATGGGCTCCGGACTCGTCCAGGCCAAGACAATTTACG
ACTCGGTTAACATGATTCAGTCGCTGGATGCCTTGGTTGAGCCACGGGAA
ACGACCAAGGTTCCGCTGCAAACAACGCCAGCCACGCCCCCCACTGCCCA
CGCCCACATCCACAACCAGGTGTCCACGTTACGGAGTAGTTACGAGGATT
CAGATGATGGCGTAGATGGCGATTATGTCATCCCAGAGAGCCAGACATCT
ACGGTGGCGATCCTGGATCAGGATTCCTCCATGAAGGGCCAGGACATGGA
ATCGTTATCCCTGCAGGCAGGATCGGGCACAGTTTCACCAAAGAGCAGCC
CCGATTCGTCCGGACACAAGAAGAACGCCTCCTTCCAGCAGATTGGCAGC
CAGAATGTTAACGCCTTAGTGCCGGCCACAGTGGCCACCACTTCATCCGG
CCTCCCGTCGAGCAGCAACGCCTCCTTGGCCACGCCCACGGAGCCGGCGA
GGAACCGGAGCACCGGACTCGTCCGCAACTCCGCTGTCAAGGTGGACAGC
AAGCATCCACTGTCCAAGGGCCAGAAGACGGACGCACCCATGCTGAACTA
CATCTTCGACACGTTCTCTTCGGCCAATAAGCACCATCATCACGATCAGA
GGTATGGCCCCCACTTCGAGGATGTGCAGCGGATTGGTCAGGCCACCAAT
CTCACCGTGCAGGCGGGCTCCAGCATTCACCTGAACTGCAGGATCTCACT
GCTGCAGGATAAGACTGTCTCTTGGGTGCGGCACAACACGCAGGACGAGG
GCAAGGACAATGGCAACGCCCTGGACCTGCTGACAGTGGGCATGCACACG
TATACGGGTGATAAGCGCTACAAGATGGAGTTCCAGTACCCAAACAACTG
GCGACTGAAGATAACCAATGTGAAGAAGGACGACGAGGCTATCTACGAGT
GCCAGATCTCAACGCATCCGCCACGCGTCATTCAAATCAACCTGCACGTT
AATGCTCCGAAAGTGATGATAGTGGACGAGGTGGGTGATCCGCTGCAGGA
GAAGTACTACGAGATCGATTCCACGCTACAGCTCTCCTGTGTGGTGCGAA
ACGTGGCCATGACCAGTTCCGTGGTCTTCTGGAAGCACATGGACAACATC
CTTAACTACGACGTTACTCGCGGGGGAGTGAGCGTCAAAACCGAACTGAT
GGAGGATGGAGCCAACTCGACGCTCTCGATAGCGAAGATCAGTAAAACGG
ATTCCGGCAACTACACATGCTCCATCAGTGAGTTCCAGAACTTCACCATA
GTGGTTCACATTCTGAACGGCGAAAGCTTCGCCGAACTGCATCATGGTGG
TGCGGTTGGATGGCACAGCACGTGGTGGAATATGGTGATGCTGCATGCAA
TGGCACTCCTTGTGCTAAATAGTCTAAGGGGGGAGTTTAGCGCAAGCTTT
CTAGACCAT
BO08103.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr20-RA | 1578 | CG12191-PA | 1..1575 | 17..1591 | 7875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr20-RA | 2717 | CG12191-RA | 579..2153 | 17..1591 | 7875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 854585..855044 | 803..344 | 2300 | 100 | Minus |
3L | 28110227 | 3L | 856343..856670 | 344..17 | 1640 | 100 | Minus |
3L | 28110227 | 3L | 853906..854143 | 1154..917 | 1190 | 100 | Minus |
3L | 28110227 | 3L | 853670..853848 | 1332..1154 | 895 | 100 | Minus |
3L | 28110227 | 3L | 853468..853607 | 1470..1331 | 700 | 100 | Minus |
3L | 28110227 | 3L | 853284..853406 | 1591..1469 | 615 | 100 | Minus |
3L | 28110227 | 3L | 854294..854412 | 918..800 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:04:11 has no hits.
BO08103.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:12 Download gff for
BO08103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr20-RA | 1..1578 | 17..1595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:21 Download gff for
BO08103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr20-RA | 570..2154 | 17..1602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:32 Download gff for
BO08103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr20-RA | 579..2153 | 17..1593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:13 Download gff for
BO08103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr20-RA | 570..2154 | 17..1602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:38 Download gff for
BO08103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr20-RA | 579..2153 | 17..1593 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:38 Download gff for
BO08103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 853906..854143 | 917..1154 | 100 | <- | Minus |
3L | 854296..854410 | 802..916 | 100 | <- | Minus |
3L | 853282..853405 | 1470..1593 | 98 | <- | Minus |
3L | 853469..853605 | 1333..1469 | 100 | <- | Minus |
3L | 853670..853847 | 1155..1332 | 100 | <- | Minus |
3L | 854587..855043 | 345..801 | 100 | <- | Minus |
3L | 856343..856670 | 17..344 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:32 Download gff for
BO08103.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 853282..853405 | 1470..1593 | 98 | <- | Minus |
arm_3L | 853469..853605 | 1333..1469 | 100 | <- | Minus |
arm_3L | 853670..853847 | 1155..1332 | 100 | <- | Minus |
arm_3L | 853906..854143 | 917..1154 | 100 | <- | Minus |
arm_3L | 854296..854410 | 802..916 | 100 | <- | Minus |
arm_3L | 854587..855043 | 345..801 | 100 | <- | Minus |
arm_3L | 856343..856670 | 17..344 | 100 | | Minus |
BO08103.pep Sequence
Translation from 16 to 1609
> BO08103.pep
MRLNEPAARTRPRTKSTTDATKFSSSRGDLHLDCAVPNLIRLLLLIATIM
GSGLVQAKTIYDSVNMIQSLDALVEPRETTKVPLQTTPATPPTAHAHIHN
QVSTLRSSYEDSDDGVDGDYVIPESQTSTVAILDQDSSMKGQDMESLSLQ
AGSGTVSPKSSPDSSGHKKNASFQQIGSQNVNALVPATVATTSSGLPSSS
NASLATPTEPARNRSTGLVRNSAVKVDSKHPLSKGQKTDAPMLNYIFDTF
SSANKHHHHDQRYGPHFEDVQRIGQATNLTVQAGSSIHLNCRISLLQDKT
VSWVRHNTQDEGKDNGNALDLLTVGMHTYTGDKRYKMEFQYPNNWRLKIT
NVKKDDEAIYECQISTHPPRVIQINLHVNAPKVMIVDEVGDPLQEKYYEI
DSTLQLSCVVRNVAMTSSVVFWKHMDNILNYDVTRGGVSVKTELMEDGAN
STLSIAKISKTDSGNYTCSISEFQNFTIVVHILNGESFAELHHGGAVGWH
STWWNMVMLHAMALLVLNSLRGEFSASFLDH
BO08103.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr20-PA | 525 | CG12191-PA | 1..525 | 1..525 | 2723 | 100 | Plus |
dpr14-PB | 340 | CG10946-PB | 83..317 | 278..520 | 527 | 41.6 | Plus |
dpr14-PA | 340 | CG10946-PA | 83..317 | 278..520 | 527 | 41.6 | Plus |
dpr6-PC | 390 | CG14162-PC | 82..302 | 278..514 | 358 | 36.6 | Plus |
dpr6-PE | 283 | CG14162-PE | 82..280 | 278..491 | 339 | 37.2 | Plus |