Clone BO08106 Report

Search the DGRC for BO08106

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:81
Well:6
Vector:pDNR-Dual
Associated Gene/Transcriptcry-RA
Protein status:BO08106.pep: validated full length
Sequenced Size:1660

Clone Sequence Records

BO08106.3prime Sequence

949 bp (864 high quality bases) assembled on 2006-01-06

> BO08106.3prime
ATGGTCTAGAAAGCTTGCAACCACCACGTCGGCCAGCCAGAAGAACTGAC
GCACTTCCTCCTCGTTGGATGGTCGGCAATGCGGCGGCGGGGTGATCAGC
GAATTTCGGAGAGACTTCATGGCCAGCATGTTTCGCTTTACGGCCATGGA
CAAATCAATGATCCGCTCCGGATAATGGACTCCGATCAGGCACTCGTACT
GCTCCTGCTGCTCGGCAGACATTCGCCAGGGCTCGTGAACAAATTCCTTG
GGCACATTCATCAACTCCGGGACGTACTGCTTGATGTAGGTGCCATCCGG
ATCAAGTCGCTTGGCCAATGCCACCGGGCAGGTGACCAGGGAGGAGTCCA
GCAGCCTTTCAAACGCCGAGCTGGATACCCACATCCAGTTGCCAGCGCAG
ACCGACCAATCCGCATCCAGCAGATACTTCAGAAAGTGCTGCAGTCCATG
CTCCCAGCTCTGCCACAAACCGCCGCGCGTGAGAAAGGTGGCCACGGTGT
TGCGCAGCGTATGGTGGAGCCATCCCTCGGCCAGGAGTTGTCGCATGGCG
CCGTCGATGAGCGGGAATCCCGTTTGGCCTAAACGCCAGCTCTGCAGGAG
ATTTTCGTTCGGCTTAGCCCACGGGATGCTCAGGCAGATGTCATTGCCCT
CCATGCGATCGTAGTTTGGATTGTTCACCGACATGGTGTAGAAGTACTCT
CGCCAGATCAACTGTCCCGTGATGTGCGCGCCGCCAGTCATCTGAACGCC
CCGCACACAGGCGCGCAACTGGACATTCTTGAAGAGATCGTGGACGCTCC
AGTAGAAGCGACGTACCGAAAGGCAACCAAAGCGCAGATGGGCGCTCATC
GATTTTGGCGAGTCGTGGATATTGGGCAGTGCCTGGTTGGGCAGATAAAA
TCCACGCTCAAACGCATGCTGCTCCACTTTAAGACGCTCATCAAACAGA

BO08106.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3772-PA 1629 cry-RA 696..1626 949..19 4630 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
cry-RA 1896 CG3772-RA 883..1813 949..19 4640 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19214193..19214903 949..239 3540 99.9 Minus
3R 32079331 3R 19215140..19215359 238..19 1100 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:06:37 has no hits.

BO08106.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:02 Download gff for BO08106.3prime
Subject Subject Range Query Range Percent Splice Strand
cry-PA 697..1629 16..948 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:21 Download gff for BO08106.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3772-PA 697..1629 16..948 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:47:26 Download gff for BO08106.3prime
Subject Subject Range Query Range Percent Splice Strand
cry-RA 845..1779 14..948 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:05:04 Download gff for BO08106.3prime
Subject Subject Range Query Range Percent Splice Strand
cry-RA 884..1818 14..948 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:05:04 Download gff for BO08106.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19214194..19214903 239..948 99 -> Minus
3R 19215140..19215364 14..238 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:47:26 Download gff for BO08106.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15039916..15040625 239..948 99 -> Minus
arm_3R 15040862..15041086 14..238 99   Minus

BO08106.5prime Sequence

953 bp (850 high quality bases) assembled on 2006-01-06

> BO08106.5prime
GAAGTTATCAGTCGACATGGCCACGCGAGGGGCGAATGTGATTTGGTTTC
GCCATGGATTGCGCCTCCATGATAATCCCGCTCTATTGGCCGCCCTCGCC
GATAAGGATCAGGGTATAGCCCTAATTCCCGTTTTCATATTCGATGGAGA
GAGTGCAGGTACCAAGAATGTGGGTTACAATCGGATGCGTTTCCTCCTGG
ACTCGTTGCAGGACATCGATGATCAGCTACAGGCGGCAACTGATGGACGT
GGACGCCTCCTGGTCTTCGAGGGCGAACCGGCTTATATCTTCCGCCGGCT
ACATGAGCAAGTGCGTCTGCACAGGATTTGCATAGAGCAGGACTGCGAGC
CAATTTGGAATGAGCGCGATGAAAGCATCCGTTCTCTATGTCGGGAGCTG
AATATCGACTTTGTCGAGAAGGTATCACACACGCTTTGGGATCCGCAATT
GGTGATTGAGACCAATGGTGGCATTCCACCGCTGACCTACCAAATGTTCC
TGCACACGGTGCAAATTATTGGGCTTCCACCGCGTCCCACCGCCGATGCT
CGACTAGAAGACGCCACCTTTGTCGAGCTGGACCCCGAGTTCTGCCGAAG
TCTTAAGTTGTTCGAGCAGCTGCCCACGCCGGAGCACTTCAATGTGTATG
GAGACAACATGGGCTTCCTGGCCAAGATTAACTGGCGCGGCGGAGAAACA
CAGGCCTTACTTCTGTTGGATGAGCGTCTTAAAGTGGAGCAGCATGCGTT
TGAGCGTGGATTTTATCTGCCCAACCAGGCACTGCCCAATATCCACGACT
CGCCAAAATCGATGAGCGCCCATCTGCGCTTTGGTTGCCTTTCGGTACGT
CGCTTCTACTGGAGCGTCCACGATCTCTTTCAGAATGTCCAGTTGCGCGC
CTGTGTGCGGGGCGTTCAGATGACTGGCGGCGCGCACATCACGGGACAGT
TGA

BO08106.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3772-PA 1629 cry-RA 1..937 17..953 4635 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
cry-RA 1896 CG3772-RA 188..1124 17..953 4655 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19213983..19214434 502..953 2230 99.6 Plus
3R 32079331 3R 19213481..19213827 156..502 1735 100 Plus
3R 32079331 3R 19212341..19212485 17..161 725 100 Plus
Blast to na_te.dros performed on 2015-02-13 07:04:57 has no hits.

BO08106.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:03 Download gff for BO08106.5prime
Subject Subject Range Query Range Percent Splice Strand
cry-PA 1..936 17..952 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:22 Download gff for BO08106.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3772-PA 1..936 17..952 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:10:15 Download gff for BO08106.5prime
Subject Subject Range Query Range Percent Splice Strand
cry-RA 143..1084 8..952 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:19:23 Download gff for BO08106.5prime
Subject Subject Range Query Range Percent Splice Strand
cry-RA 182..1123 8..952 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:19:23 Download gff for BO08106.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19212335..19212482 8..158 97 -> Plus
3R 19213484..19213827 159..502 100 -> Plus
3R 19213984..19214433 503..952 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:10:15 Download gff for BO08106.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15038057..15038204 8..158 97 -> Plus
arm_3R 15039206..15039549 159..502 100 -> Plus
arm_3R 15039706..15040155 503..952 99   Plus

BO08106.complete Sequence

1660 bp (1660 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631054

> BO08106.complete
GAAGTTATCAGTCGACATGGCCACGCGAGGGGCGAATGTGATTTGGTTTC
GCCATGGATTGCGCCTCCATGATAATCCCGCTCTATTGGCCGCCCTCGCC
GATAAGGATCAGGGTATAGCCCTAATTCCCGTTTTCATATTCGATGGAGA
GAGTGCAGGTACCAAGAATGTGGGTTACAATCGGATGCGTTTCCTCCTGG
ACTCGTTGCAGGACATCGATGATCAGCTACAGGCGGCAACTGATGGACGT
GGACGCCTCCTGGTCTTCGAGGGCGAACCGGCTTATATCTTCCGCCGGCT
ACATGAGCAAGTGCGTCTGCACAGGATTTGCATAGAGCAGGACTGCGAGC
CAATTTGGAATGAGCGCGATGAAAGCATCCGTTCTCTATGTCGGGAGCTG
AATATCGACTTTGTCGAGAAGGTATCACACACGCTTTGGGATCCGCAATT
GGTGATTGAGACCAATGGTGGCATTCCACCGCTGACCTACCAAATGTTCC
TGCACACGGTGCAAATTATTGGGCTTCCACCGCGTCCCACCGCCGATGCT
CGACTAGAAGACGCCACCTTTGTCGAGCTGGACCCCGAGTTCTGCCGAAG
TCTTAAGTTGTTCGAGCAGCTGCCCACGCCGGAGCACTTCAATGTGTATG
GAGACAACATGGGCTTCCTGGCCAAGATTAACTGGCGCGGCGGAGAAACA
CAGGCCTTACTTCTGTTGGATGAGCGTCTTAAAGTGGAGCAGCATGCGTT
TGAGCGTGGATTTTATCTGCCCAACCAGGCACTGCCCAATATCCACGACT
CGCCAAAATCGATGAGCGCCCATCTGCGCTTTGGTTGCCTTTCGGTACGT
CGCTTCTACTGGAGCGTCCACGATCTCTTCAAGAATGTCCAGTTGCGCGC
CTGTGTGCGGGGCGTTCAGATGACTGGCGGCGCGCACATCACGGGACAGT
TGATCTGGCGAGAGTACTTCTACACCATGTCGGTGAACAATCCAAACTAC
GATCGCATGGAGGGCAATGACATCTGCCTGAGCATCCCGTGGGCTAAGCC
GAACGAAAATCTCCTGCAGAGCTGGCGTTTAGGCCAAACGGGATTCCCGC
TCATCGACGGCGCCATGCGACAACTCCTGGCCGAGGGATGGCTCCACCAT
ACGCTGCGCAACACCGTGGCCACCTTTCTCACGCGCGGCGGTTTGTGGCA
GAGCTGGGAGCATGGACTGCAGCACTTTCTGAAGTATCTGCTGGATGCGG
ATTGGTCGGTCTGCGCTGGCAACTGGATGTGGGTATCCAGCTCGGCGTTT
GAAAGGCTGCTGGACTCCTCCCTGGTCACCTGCCCGGTGGCATTGGCCAA
GCGACTTGATCCGGATGGCACCTACATCAAGCAGTACGTCCCGGAGTTGA
TGAATGTGCCCAAGGAATTTGTTCACGAGCCCTGGCGAATGTCTGCCGAG
CAGCAGGAGCAGTACGAGTGCCTGATCGGAGTCCATTATCCGGAGCGGAT
CATTGATTTGTCCATGGCCGTAAAGCGAAACATGCTGGCCATGAAGTCTC
TCCGAAATTCGCTGATCACCCCGCCGCCGCATTGCCGACCATCCAACGAG
GAGGAAGTGCGTCAGTTCTTCTGGCTGGCCGACGTGGTGGTTGCAAGCTT
TCTAGACCAT

BO08106.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
cry-RA 1629 CG3772-PA 1..1626 17..1642 8130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
cry-RA 1896 CG3772-RA 188..1813 17..1642 8130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19213983..19214903 502..1422 4605 100 Plus
3R 32079331 3R 19213481..19213827 156..502 1735 100 Plus
3R 32079331 3R 19215140..19215359 1423..1642 1100 100 Plus
3R 32079331 3R 19212341..19212485 17..161 725 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:34:49 has no hits.

BO08106.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:14 Download gff for BO08106.complete
Subject Subject Range Query Range Percent Splice Strand
cry-RA 1..1629 17..1645 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:23 Download gff for BO08106.complete
Subject Subject Range Query Range Percent Splice Strand
cry-RA 143..1779 8..1647 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:57 Download gff for BO08106.complete
Subject Subject Range Query Range Percent Splice Strand
cry-RA 149..1774 17..1644 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:14 Download gff for BO08106.complete
Subject Subject Range Query Range Percent Splice Strand
cry-RA 143..1779 8..1647 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:37 Download gff for BO08106.complete
Subject Subject Range Query Range Percent Splice Strand
cry-RA 188..1813 17..1644 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:37 Download gff for BO08106.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19212341..19212482 17..158 100 -> Plus
3R 19213484..19213827 159..502 100 -> Plus
3R 19213984..19214903 503..1422 100 -> Plus
3R 19215140..19215359 1423..1644 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:57 Download gff for BO08106.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15038063..15038204 17..158 100 -> Plus
arm_3R 15039206..15039549 159..502 100 -> Plus
arm_3R 15039706..15040625 503..1422 100 -> Plus
arm_3R 15040862..15041081 1423..1644 99   Plus

BO08106.pep Sequence

Translation from 16 to 1660

> BO08106.pep
MATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTK
NVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVR
LHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETN
GGIPPLTYQMFLHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFE
QLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVEQHAFERGFY
LPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGV
QMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLL
QSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHG
LQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPD
GTYIKQYVPELMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSM
AVKRNMLAMKSLRNSLITPPPHCRPSNEEEVRQFFWLADVVVASFLDH

BO08106.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
cry-PA 542 CG3772-PA 1..542 1..542 2924 100 Plus
phr6-4-PD 540 CG2488-PD 5..494 4..509 850 37.9 Plus
phr6-4-PC 540 CG2488-PC 5..494 4..509 850 37.9 Plus
phr6-4-PB 540 CG2488-PB 5..494 4..509 850 37.9 Plus
phr6-4-PA 540 CG2488-PA 5..494 4..509 850 37.9 Plus