Clone Sequence Records
BO08106.3prime Sequence
949 bp (864 high quality bases) assembled on 2006-01-06
> BO08106.3prime
ATGGTCTAGAAAGCTTGCAACCACCACGTCGGCCAGCCAGAAGAACTGAC
GCACTTCCTCCTCGTTGGATGGTCGGCAATGCGGCGGCGGGGTGATCAGC
GAATTTCGGAGAGACTTCATGGCCAGCATGTTTCGCTTTACGGCCATGGA
CAAATCAATGATCCGCTCCGGATAATGGACTCCGATCAGGCACTCGTACT
GCTCCTGCTGCTCGGCAGACATTCGCCAGGGCTCGTGAACAAATTCCTTG
GGCACATTCATCAACTCCGGGACGTACTGCTTGATGTAGGTGCCATCCGG
ATCAAGTCGCTTGGCCAATGCCACCGGGCAGGTGACCAGGGAGGAGTCCA
GCAGCCTTTCAAACGCCGAGCTGGATACCCACATCCAGTTGCCAGCGCAG
ACCGACCAATCCGCATCCAGCAGATACTTCAGAAAGTGCTGCAGTCCATG
CTCCCAGCTCTGCCACAAACCGCCGCGCGTGAGAAAGGTGGCCACGGTGT
TGCGCAGCGTATGGTGGAGCCATCCCTCGGCCAGGAGTTGTCGCATGGCG
CCGTCGATGAGCGGGAATCCCGTTTGGCCTAAACGCCAGCTCTGCAGGAG
ATTTTCGTTCGGCTTAGCCCACGGGATGCTCAGGCAGATGTCATTGCCCT
CCATGCGATCGTAGTTTGGATTGTTCACCGACATGGTGTAGAAGTACTCT
CGCCAGATCAACTGTCCCGTGATGTGCGCGCCGCCAGTCATCTGAACGCC
CCGCACACAGGCGCGCAACTGGACATTCTTGAAGAGATCGTGGACGCTCC
AGTAGAAGCGACGTACCGAAAGGCAACCAAAGCGCAGATGGGCGCTCATC
GATTTTGGCGAGTCGTGGATATTGGGCAGTGCCTGGTTGGGCAGATAAAA
TCCACGCTCAAACGCATGCTGCTCCACTTTAAGACGCTCATCAAACAGA
BO08106.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3772-PA | 1629 | cry-RA | 696..1626 | 949..19 | 4630 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cry-RA | 1896 | CG3772-RA | 883..1813 | 949..19 | 4640 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:06:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19214193..19214903 | 949..239 | 3540 | 99.9 | Minus |
3R | 32079331 | 3R | 19215140..19215359 | 238..19 | 1100 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:06:37 has no hits.
BO08106.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:02 Download gff for
BO08106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cry-PA | 697..1629 | 16..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:21 Download gff for
BO08106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3772-PA | 697..1629 | 16..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:47:26 Download gff for
BO08106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cry-RA | 845..1779 | 14..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:05:04 Download gff for
BO08106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cry-RA | 884..1818 | 14..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:05:04 Download gff for
BO08106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19214194..19214903 | 239..948 | 99 | -> | Minus |
3R | 19215140..19215364 | 14..238 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:47:26 Download gff for
BO08106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15039916..15040625 | 239..948 | 99 | -> | Minus |
arm_3R | 15040862..15041086 | 14..238 | 99 | | Minus |
BO08106.5prime Sequence
953 bp (850 high quality bases) assembled on 2006-01-06
> BO08106.5prime
GAAGTTATCAGTCGACATGGCCACGCGAGGGGCGAATGTGATTTGGTTTC
GCCATGGATTGCGCCTCCATGATAATCCCGCTCTATTGGCCGCCCTCGCC
GATAAGGATCAGGGTATAGCCCTAATTCCCGTTTTCATATTCGATGGAGA
GAGTGCAGGTACCAAGAATGTGGGTTACAATCGGATGCGTTTCCTCCTGG
ACTCGTTGCAGGACATCGATGATCAGCTACAGGCGGCAACTGATGGACGT
GGACGCCTCCTGGTCTTCGAGGGCGAACCGGCTTATATCTTCCGCCGGCT
ACATGAGCAAGTGCGTCTGCACAGGATTTGCATAGAGCAGGACTGCGAGC
CAATTTGGAATGAGCGCGATGAAAGCATCCGTTCTCTATGTCGGGAGCTG
AATATCGACTTTGTCGAGAAGGTATCACACACGCTTTGGGATCCGCAATT
GGTGATTGAGACCAATGGTGGCATTCCACCGCTGACCTACCAAATGTTCC
TGCACACGGTGCAAATTATTGGGCTTCCACCGCGTCCCACCGCCGATGCT
CGACTAGAAGACGCCACCTTTGTCGAGCTGGACCCCGAGTTCTGCCGAAG
TCTTAAGTTGTTCGAGCAGCTGCCCACGCCGGAGCACTTCAATGTGTATG
GAGACAACATGGGCTTCCTGGCCAAGATTAACTGGCGCGGCGGAGAAACA
CAGGCCTTACTTCTGTTGGATGAGCGTCTTAAAGTGGAGCAGCATGCGTT
TGAGCGTGGATTTTATCTGCCCAACCAGGCACTGCCCAATATCCACGACT
CGCCAAAATCGATGAGCGCCCATCTGCGCTTTGGTTGCCTTTCGGTACGT
CGCTTCTACTGGAGCGTCCACGATCTCTTTCAGAATGTCCAGTTGCGCGC
CTGTGTGCGGGGCGTTCAGATGACTGGCGGCGCGCACATCACGGGACAGT
TGA
BO08106.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3772-PA | 1629 | cry-RA | 1..937 | 17..953 | 4635 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:04:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cry-RA | 1896 | CG3772-RA | 188..1124 | 17..953 | 4655 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19213983..19214434 | 502..953 | 2230 | 99.6 | Plus |
3R | 32079331 | 3R | 19213481..19213827 | 156..502 | 1735 | 100 | Plus |
3R | 32079331 | 3R | 19212341..19212485 | 17..161 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:04:57 has no hits.
BO08106.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:03 Download gff for
BO08106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cry-PA | 1..936 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:22 Download gff for
BO08106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3772-PA | 1..936 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:10:15 Download gff for
BO08106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cry-RA | 143..1084 | 8..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:19:23 Download gff for
BO08106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cry-RA | 182..1123 | 8..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:19:23 Download gff for
BO08106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19212335..19212482 | 8..158 | 97 | -> | Plus |
3R | 19213484..19213827 | 159..502 | 100 | -> | Plus |
3R | 19213984..19214433 | 503..952 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:10:15 Download gff for
BO08106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15038057..15038204 | 8..158 | 97 | -> | Plus |
arm_3R | 15039206..15039549 | 159..502 | 100 | -> | Plus |
arm_3R | 15039706..15040155 | 503..952 | 99 | | Plus |
BO08106.complete Sequence
1660 bp (1660 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631054
> BO08106.complete
GAAGTTATCAGTCGACATGGCCACGCGAGGGGCGAATGTGATTTGGTTTC
GCCATGGATTGCGCCTCCATGATAATCCCGCTCTATTGGCCGCCCTCGCC
GATAAGGATCAGGGTATAGCCCTAATTCCCGTTTTCATATTCGATGGAGA
GAGTGCAGGTACCAAGAATGTGGGTTACAATCGGATGCGTTTCCTCCTGG
ACTCGTTGCAGGACATCGATGATCAGCTACAGGCGGCAACTGATGGACGT
GGACGCCTCCTGGTCTTCGAGGGCGAACCGGCTTATATCTTCCGCCGGCT
ACATGAGCAAGTGCGTCTGCACAGGATTTGCATAGAGCAGGACTGCGAGC
CAATTTGGAATGAGCGCGATGAAAGCATCCGTTCTCTATGTCGGGAGCTG
AATATCGACTTTGTCGAGAAGGTATCACACACGCTTTGGGATCCGCAATT
GGTGATTGAGACCAATGGTGGCATTCCACCGCTGACCTACCAAATGTTCC
TGCACACGGTGCAAATTATTGGGCTTCCACCGCGTCCCACCGCCGATGCT
CGACTAGAAGACGCCACCTTTGTCGAGCTGGACCCCGAGTTCTGCCGAAG
TCTTAAGTTGTTCGAGCAGCTGCCCACGCCGGAGCACTTCAATGTGTATG
GAGACAACATGGGCTTCCTGGCCAAGATTAACTGGCGCGGCGGAGAAACA
CAGGCCTTACTTCTGTTGGATGAGCGTCTTAAAGTGGAGCAGCATGCGTT
TGAGCGTGGATTTTATCTGCCCAACCAGGCACTGCCCAATATCCACGACT
CGCCAAAATCGATGAGCGCCCATCTGCGCTTTGGTTGCCTTTCGGTACGT
CGCTTCTACTGGAGCGTCCACGATCTCTTCAAGAATGTCCAGTTGCGCGC
CTGTGTGCGGGGCGTTCAGATGACTGGCGGCGCGCACATCACGGGACAGT
TGATCTGGCGAGAGTACTTCTACACCATGTCGGTGAACAATCCAAACTAC
GATCGCATGGAGGGCAATGACATCTGCCTGAGCATCCCGTGGGCTAAGCC
GAACGAAAATCTCCTGCAGAGCTGGCGTTTAGGCCAAACGGGATTCCCGC
TCATCGACGGCGCCATGCGACAACTCCTGGCCGAGGGATGGCTCCACCAT
ACGCTGCGCAACACCGTGGCCACCTTTCTCACGCGCGGCGGTTTGTGGCA
GAGCTGGGAGCATGGACTGCAGCACTTTCTGAAGTATCTGCTGGATGCGG
ATTGGTCGGTCTGCGCTGGCAACTGGATGTGGGTATCCAGCTCGGCGTTT
GAAAGGCTGCTGGACTCCTCCCTGGTCACCTGCCCGGTGGCATTGGCCAA
GCGACTTGATCCGGATGGCACCTACATCAAGCAGTACGTCCCGGAGTTGA
TGAATGTGCCCAAGGAATTTGTTCACGAGCCCTGGCGAATGTCTGCCGAG
CAGCAGGAGCAGTACGAGTGCCTGATCGGAGTCCATTATCCGGAGCGGAT
CATTGATTTGTCCATGGCCGTAAAGCGAAACATGCTGGCCATGAAGTCTC
TCCGAAATTCGCTGATCACCCCGCCGCCGCATTGCCGACCATCCAACGAG
GAGGAAGTGCGTCAGTTCTTCTGGCTGGCCGACGTGGTGGTTGCAAGCTT
TCTAGACCAT
BO08106.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cry-RA | 1629 | CG3772-PA | 1..1626 | 17..1642 | 8130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cry-RA | 1896 | CG3772-RA | 188..1813 | 17..1642 | 8130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19213983..19214903 | 502..1422 | 4605 | 100 | Plus |
3R | 32079331 | 3R | 19213481..19213827 | 156..502 | 1735 | 100 | Plus |
3R | 32079331 | 3R | 19215140..19215359 | 1423..1642 | 1100 | 100 | Plus |
3R | 32079331 | 3R | 19212341..19212485 | 17..161 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:34:49 has no hits.
BO08106.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:14 Download gff for
BO08106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cry-RA | 1..1629 | 17..1645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:23 Download gff for
BO08106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cry-RA | 143..1779 | 8..1647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:57 Download gff for
BO08106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cry-RA | 149..1774 | 17..1644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:14 Download gff for
BO08106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cry-RA | 143..1779 | 8..1647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:37 Download gff for
BO08106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cry-RA | 188..1813 | 17..1644 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:37 Download gff for
BO08106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19212341..19212482 | 17..158 | 100 | -> | Plus |
3R | 19213484..19213827 | 159..502 | 100 | -> | Plus |
3R | 19213984..19214903 | 503..1422 | 100 | -> | Plus |
3R | 19215140..19215359 | 1423..1644 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:57 Download gff for
BO08106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15038063..15038204 | 17..158 | 100 | -> | Plus |
arm_3R | 15039206..15039549 | 159..502 | 100 | -> | Plus |
arm_3R | 15039706..15040625 | 503..1422 | 100 | -> | Plus |
arm_3R | 15040862..15041081 | 1423..1644 | 99 | | Plus |
BO08106.pep Sequence
Translation from 16 to 1660
> BO08106.pep
MATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTK
NVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVR
LHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETN
GGIPPLTYQMFLHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFE
QLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVEQHAFERGFY
LPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGV
QMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLL
QSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHG
LQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPD
GTYIKQYVPELMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSM
AVKRNMLAMKSLRNSLITPPPHCRPSNEEEVRQFFWLADVVVASFLDH
BO08106.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cry-PA | 542 | CG3772-PA | 1..542 | 1..542 | 2924 | 100 | Plus |
phr6-4-PD | 540 | CG2488-PD | 5..494 | 4..509 | 850 | 37.9 | Plus |
phr6-4-PC | 540 | CG2488-PC | 5..494 | 4..509 | 850 | 37.9 | Plus |
phr6-4-PB | 540 | CG2488-PB | 5..494 | 4..509 | 850 | 37.9 | Plus |
phr6-4-PA | 540 | CG2488-PA | 5..494 | 4..509 | 850 | 37.9 | Plus |