Clone Sequence Records
BO08109.3prime Sequence
898 bp (775 high quality bases) assembled on 2006-01-06
> BO08109.3prime
ATGGTCTAGAAAGCTTGCCAAGACCTGCTCCTGTTCCGCCTCCGAGGACA
AGGAGCGACTGTCCGGAGAGGCCGCGCTCAGGCTGTCAACTAGGTCGCCC
GTGTAAAAGAGCACCGCCTTCGGGACGATTTGGGTGCGTAGCAGGAAGCC
CACTTCGAAATCGTTGCCAAGGATCAGCTTGGTCTTTTCATCCGCGAGCG
ACAGGTCCAAGGCCTGCGGCGGAGCAAAGAAGCGAAAGAAGGACTCCCGA
GGCATGACCTTGGTGACTCGGTGTGCTCTGTTCCTTCGCCTGCTTTCCAC
CGTTTGGAGAGTGAGATTGGAGCCATCGCGCCAGTGGATGTGGCAGCCTT
CGCAACGAACTATTTCGGGCCCTTCGAACAGAAAGGGATACTCCGGGTCC
GCCGAGTGCTGCAGAAAGTAGCGCTTCGTGAGCAGCAGCGAGGAATCGTG
CAGGAAGCTATTGGGCCGAAACTGAAAGATGACCATGTAGCTGTCCTGGT
CGTAAGCCAGGCGCACATCCATTAGGCTCTCCAGAAGCGGCTCGTCGTGA
TCCTGGACCAACTCCGAGAGCAGGGGCACGTTCTGGAAAACTGTCAGCCA
AAAGCGTGGAACACCCAGCGTAGTCGGCGAAACCGGAGCCAGTTTTTGCC
TCAGCTGTCGCAGCTCCTCGTTGTTCCCGAAGTCCAGGTACAGAGCATCC
TGCGGGTCCTCGGGCCAGGTCTTCTCCGTTTGGATCGGTGGCTCCACCGA
ACCCTCCAAAATATCCCGCCTCGCATCGAAGAGCGCGCAGCTCTGGCCGT
AGAAACGTCGCTCCAGCTCGTAGACTTCCCGGAAGAACTGCTCCGAAATG
CGTACCTGTTGCAGCTGATTGTGCCGCAGTGCCCGTATGCGGTTCTGC
BO08109.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3708-PA | 1128 | CG3708-RA | 246..1125 | 898..19 | 4400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:40:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3708-RB | 1301 | CG3708-RB | 321..1200 | 898..19 | 4400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 928899..929778 | 19..898 | 4400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:40:42 has no hits.
BO08109.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:08 Download gff for
BO08109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-PA | 246..1128 | 16..898 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:28 Download gff for
BO08109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-PA | 246..1128 | 16..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:06:21 Download gff for
BO08109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-RB | 321..1200 | 19..898 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:57:02 Download gff for
BO08109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-RB | 321..1200 | 19..898 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:57:02 Download gff for
BO08109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 928899..929778 | 19..898 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:06:21 Download gff for
BO08109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 822932..823811 | 19..898 | 100 | | Plus |
BO08109.5prime Sequence
784 bp (782 high quality bases) assembled on 2006-01-06
> BO08109.5prime
GAAGTTATCAGTCGACATGTTGCCAAATTTCGAAGTTATTGCACCGAATT
GCACAATGATTGGGATGGCTGACAGCGCGGAGGGGGTTACCCAGGAAGAC
AGCCACACGGAGTCGAGGGCAGACGGCATCAGCGGGTCCTTGCGCTCCCT
GGGCACATATACCCAGGAGTCCACAGAGCCGGCTTTGAGTCCGGCGGACC
TTCCCGCCCGCAGCCGGAAGGCCTTTCTGCGGCACATGATCGGCCAGCTG
GCGGAGCCCGTGCAGAACCGCATACGGGCACTGCGGCACAATCAGCTGCA
ACAGGTACGCATTTCGGAGCAGTTCTTCCGGGAAGTCTACGAGCTGGAGC
GACGTTTCTACGGCCAGAGCTGCGCGCTCTTCGATGCGAGGCGGGATATT
TTGGAGGGTTCGGTGGAGCCACCGATCCAAACGGAGAAGACCTGGCCCGA
GGACCCGCAGGATGCTCTGTACCTGGACTTCGGGAACAACGAGGAGCTGC
GACAGCTGAGGCAAAAACTGGCTCCGGTTTCGCCGACTACGCTGGGTGTT
CCACGCTTTTGGCTGACAGTTTTCCAGAACGTGCCCCTGCTCTCGGAGTT
GGTCCAGGATCACGACGAGCCGCTTCTGGAGAGCCTAATGGATGTGCGCC
TGGCTTACGACCAGGACAGCTACATGGTCATCTTTCAGTTTCGGCCCAAT
AGCTTCCTGCACGATTCCTCGCTGCTGCTCACGAAGCGCTACTTTCTGCA
GCACTCGGCGGACCCGGAGTATCCCTTTCTGTTC
BO08109.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3708-PA | 1128 | CG3708-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:05:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3708-RB | 1301 | CG3708-RB | 76..843 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:05:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 929256..930023 | 784..17 | 3840 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:05:51 has no hits.
BO08109.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:09 Download gff for
BO08109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:30 Download gff for
BO08109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:27 Download gff for
BO08109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-RB | 71..843 | 9..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:00 Download gff for
BO08109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-RB | 71..843 | 9..784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:00 Download gff for
BO08109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 929256..930028 | 9..784 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:27 Download gff for
BO08109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 823289..824061 | 9..784 | 99 | | Minus |
BO08109.complete Sequence
1159 bp (1159 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631055
> BO08109.complete
GAAGTTATCAGTCGACATGTTGCCAAATTTCGAAGTTATTGCACCGAATT
GCACAATGATTGGGATGGCTGACAGCGCGGAGGGGGTTACCCAGGAAGAC
AGCCACACGGAGTCGAGGGCAGACGGCATCAGCGGGTCCTTGCGCTCCCT
GGGCACATATACCCAGGAGTCCACAGAGCCGGCTTTGAGTCCGGCGGACC
TTCCCGCCCGCAGCCGGAAGGCCTTTCTGCGGCACATGATCGGCCAGCTG
GCGGAGCCCGTGCAGAACCGCATACGGGCACTGCGGCACAATCAGCTGCA
ACAGGTACGCATTTCGGAGCAGTTCTTCCGGGAAGTCTACGAGCTGGAGC
GACGTTTCTACGGCCAGAGCTGCGCGCTCTTCGATGCGAGGCGGGATATT
TTGGAGGGTTCGGTGGAGCCACCGATCCAAACGGAGAAGACCTGGCCCGA
GGACCCGCAGGATGCTCTGTACCTGGACTTCGGGAACAACGAGGAGCTGC
GACAGCTGAGGCAAAAACTGGCTCCGGTTTCGCCGACTACGCTGGGTGTT
CCACGCTTTTGGCTGACAGTTTTCCAGAACGTGCCCCTGCTCTCGGAGTT
GGTCCAGGATCACGACGAGCCGCTTCTGGAGAGCCTAATGGATGTGCGCC
TGGCTTACGACCAGGACAGCTACATGGTCATCTTTCAGTTTCGGCCCAAT
AGCTTCCTGCACGATTCCTCGCTGCTGCTCACGAAGCGCTACTTTCTGCA
GCACTCGGCGGACCCGGAGTATCCCTTTCTGTTCGAAGGGCCCGAAATAG
TTCGTTGCGAAGGCTGCCACATCCACTGGCGCGATGGCTCCAATCTCACT
CTCCAAACGGTGGAAAGCAGGCGAAGGAACAGAGCACACCGAGTCACCAA
GGTCATGCCTCGGGAGTCCTTCTTTCGCTTCTTTGCTCCGCCGCAGGCCT
TGGACCTGTCGCTCGCGGATGAAAAGACCAAGCTGATCCTTGGCAACGAT
TTCGAAGTGGGCTTCCTGCTACGCACCCAAATCGTCCCGAAGGCGGTGCT
CTTTTACACGGGCGACCTAGTTGACAGCCTGAGCGCGGCCTCTCCGGACA
GTCGCTCCTTGTCCTCGGAGGCGGAACAGGAGCAGGTCTTGGCAAGCTTT
CTAGACCAT
BO08109.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:55:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3708-RB | 1089 | CG3708-PB | 1..1086 | 56..1141 | 5430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:55:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3708-RB | 1301 | CG3708-RB | 76..1200 | 17..1141 | 5625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:55:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 928899..930023 | 1141..17 | 5625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:55:08 has no hits.
BO08109.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:38 Download gff for
BO08109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-RA | 1..1128 | 17..1144 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:45 Download gff for
BO08109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-RA | 826..1955 | 9..1141 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:24 Download gff for
BO08109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-RB | 81..1200 | 22..1143 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:39 Download gff for
BO08109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-RA | 826..1955 | 9..1141 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:50 Download gff for
BO08109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3708-RB | 81..1200 | 22..1143 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:50 Download gff for
BO08109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 928896..930018 | 22..1143 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:24 Download gff for
BO08109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 822929..824051 | 22..1143 | 99 | | Minus |
BO08109.pep Sequence
Translation from 16 to 1159
> BO08109.pep
MLPNFEVIAPNCTMIGMADSAEGVTQEDSHTESRADGISGSLRSLGTYTQ
ESTEPALSPADLPARSRKAFLRHMIGQLAEPVQNRIRALRHNQLQQVRIS
EQFFREVYELERRFYGQSCALFDARRDILEGSVEPPIQTEKTWPEDPQDA
LYLDFGNNEELRQLRQKLAPVSPTTLGVPRFWLTVFQNVPLLSELVQDHD
EPLLESLMDVRLAYDQDSYMVIFQFRPNSFLHDSSLLLTKRYFLQHSADP
EYPFLFEGPEIVRCEGCHIHWRDGSNLTLQTVESRRRNRAHRVTKVMPRE
SFFRFFAPPQALDLSLADEKTKLILGNDFEVGFLLRTQIVPKAVLFYTGD
LVDSLSAASPDSRSLSSEAEQEQVLASFLDH
BO08109.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3708-PB | 362 | CG3708-PB | 1..362 | 14..375 | 1866 | 100 | Plus |
| Nap1-PC | 370 | CG5330-PC | 30..325 | 59..353 | 602 | 40.9 | Plus |
| Nap1-PB | 370 | CG5330-PB | 30..325 | 59..353 | 602 | 40.9 | Plus |
| Nap1-PA | 370 | CG5330-PA | 30..325 | 59..353 | 602 | 40.9 | Plus |
| mil-PA | 283 | CG5017-PA | 28..274 | 80..372 | 302 | 27.3 | Plus |
