Clone Sequence Records
BO08110.3prime Sequence
933 bp (734 high quality bases) assembled on 2006-01-06
> BO08110.3prime
ATGGTCTAGAAAGCTTGCTGTATTGGATTTGTTGCTGTCGCTGGTATCCA
CTGCTTGCGGGTTGTCCTTCTCCGCTTCTTTGTCCAACTGCTCCTTGGAA
AGTTGTTGTTTTAGGGCAGCCACTGCCTGTTCGTTTTGTGCCTCAGTGGC
CTCTTCAAAGGAGGACGATTTTGGCTCATTTGTAGCTTCTTCCTCCACAT
CCTCTCCCCTGGATGGTCTTTCTAGTTCGATTTCCTCCTCGTCTATGGAG
AGCGCTTTTTCCCGCTTCCAAAACTCGGTATCCTTATAATGCTCCGGCAC
AACCTCACCCCAGGGATTTGTGCTCTCCTCACCGAGCATCTCTAAGGATG
TGGTCGACTCTGCCGTTGGTCTAACATCCTTTGCTGGACTCCTTTTGTGA
CGTCGGTGGGATTTAACCCTCAGGGTAGGTTCGCTCGTATACTTGATGGG
GTTATAGTCCTCTCGGTCACCGTGGCGCAACTCCTCCTCCTCTAGCGAGG
TGAACATCTTTAGTTCTTCGTCGCGGGAGGCTCGCGATTCCCGCGAGGAG
TTCGAGCTTCCACTGGATCGTCGCTTCTTAAAAGCCCTTCTTCTCCCTGA
ACCATCCTCTCGCATCAAAGGACGATTCTTAATGCCATCTAGAGAACGAA
GGTAGTCCTCGGTGTACTGGACTTCCTGTATCTGATCTTCTCCTTCAGGT
TCTGGGCGTTCACTTTCGATTCTGTTGCCCTCATCAGAGGGCTGCGTGCT
GAAGGACGACTGCTGGATGGAGAACGGAGTTTTGGGTTCAAGAGAGGATC
CTTCATCCGATACGCCAGGGAAGGTGAGTGTTTTTGACTTTGCTGAGTAG
GCGTCTTCAGGACCACTTTCTTGACCAAATTGAGTTTTCACTTTATGCAC
CATGGGTTCTTCTGGAAGGCTCTTGAACCTGGG
BO08110.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11915-PA | 2085 | CG11915-RA | 1185..2082 | 916..19 | 4440 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lmpt-RL | 3051 | CG42679-RL | 1806..2720 | 933..19 | 4485 | 99.5 | Minus |
| Lmpt-RK | 7424 | CG42679-RK | 1806..2717 | 933..22 | 4470 | 99.5 | Minus |
| Lmpt-RJ | 4501 | CG42679-RJ | 1806..2717 | 933..22 | 4470 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:05:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16901237..16902069 | 916..84 | 4135 | 99.8 | Minus |
| 3L | 28110227 | 3L | 16902128..16902191 | 85..22 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:05:05 has no hits.
BO08110.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:10 Download gff for
BO08110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11915-PA | 1168..2085 | 16..933 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:31 Download gff for
BO08110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11915-PA | 1168..2085 | 16..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:10:18 Download gff for
BO08110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RL | 1806..2720 | 19..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:19:54 Download gff for
BO08110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RL | 1806..2720 | 19..933 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:19:54 Download gff for
BO08110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16901220..16902068 | 85..933 | 99 | -> | Minus |
| 3L | 16902129..16902196 | 14..84 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:10:18 Download gff for
BO08110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16894320..16895168 | 85..933 | 99 | -> | Minus |
| arm_3L | 16895229..16895296 | 14..84 | 94 | | Minus |
BO08110.5prime Sequence
874 bp (748 high quality bases) assembled on 2006-01-06
> BO08110.5prime
GAAGTTATCAGTCGACATGGCCGCTGAGGAGACGGCGCTAACCGGCGTCG
GCGAGCTACTATTCTCGCTGCTAATTGGATACCTAGGTGCCCTGGAATTC
GCCTTTGTGGCGCGCCATCTATACCACTGGACTTTCCAACATCCCGGCGA
TTCTTCTGTAGATGCAGCAGCTGACGCAGAAGAATTGCCTCGCATGCGAG
AGCGATTGGATAAGCAGATCAAGGAGGCGGCGGAAAGGGAAGCCCTGGCA
GGAACCAATGTCATGCAGGATGGTGTCCTATATGTCAATGGAATACGAGT
AGATCCTGCTGGAGATAAAAGACAAGCTTTGGCAGCCGAACTGGCACGTC
AACAGCAAATTGAAGCCGATACGAGGCGTCAGCTGGCCGAAGCCGAGGCC
AAGCTGGTAGAAGAAAGACTACGAGTCCAGAGGGAGAAAGAGGAATCGGA
GGAGCAGCAGAGAAAGCTCGTAGAGGCGGAAAGACAGCGCGAAAGAGAGC
AGGCGGAGAAAGAACTGCAGGAACAAAGAGAAGCCGAACGCAGACAGCTA
GAAGCAGAAGAAAATCAGCGTAAACAGCGCGAAAACGAGGAGAAAGAACG
CCTAGAAAACGAAAGAAGGCTGATAGATGCCGAACGGGAAAGGGAGGAGA
ATGAGCGAAGACTGCAAGAAGCTGAAGAGCAGCGCGAGCGAGAAGAAAGC
GAAAGAAGAATCGTCGTGGCAGAGCGTCAGAGAGAGCAGGCCGAAGCCGA
AAAGGAGCGAGCCGAACAACAAAGGATCCTGGCTGAAGCCGAGGCAGCGC
AAGCCGAGCGTCGTCTCTTTGATGCCGAGATTCAGCGAGAGCGCGATCAA
GCTGACGAAGAAGGGCAAGCACTG
BO08110.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11915-PA | 2085 | CG11915-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:06:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lmpt-RL | 3051 | CG42679-RL | 639..1496 | 17..874 | 4290 | 100 | Plus |
| Lmpt-RK | 7424 | CG42679-RK | 639..1496 | 17..874 | 4290 | 100 | Plus |
| Lmpt-RJ | 4501 | CG42679-RJ | 639..1496 | 17..874 | 4290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16900053..16900910 | 17..874 | 4290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:06:10 has no hits.
BO08110.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:10 Download gff for
BO08110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11915-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:32 Download gff for
BO08110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11915-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:29 Download gff for
BO08110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RJ | 629..1496 | 8..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:02 Download gff for
BO08110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RJ | 629..1496 | 8..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:02 Download gff for
BO08110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16900043..16900910 | 8..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:29 Download gff for
BO08110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16893143..16894010 | 8..874 | 99 | | Plus |
BO08110.complete Sequence
2116 bp (2116 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631056
> BO08110.complete
GAAGTTATCAGTCGACATGGCCGCTGAGGAGACGGCGCTAACCGGCGTCG
GCGAGCTACTATTCTCGCTGCTAATTGGATACCTAGGTGCCCTGGAATTC
GCCTTTGTGGCGCGCCATCTATACCACTGGACTTTCCAACATCCCGGCGA
TTCTTCTGTAGATGCAGCAGCTGACGCAGAAGAATTGCCTCGCATGCGAG
AGCGATTGGATAAGCAGATCAAGGAGGCGGCGGAAAGGGAAGCCCTGGCA
GGAACCAATGTCATGCAGGATGGTGTCCTATATGTCAATGGAATACGAGT
AGATCCTGCTGGAGATAAAAGACAAGCTTTGGCAGCCGAACTGGCACGTC
AACAGCAAATTGAAGCCGATACGAGGCGTCAGCTGGCCGAAGCCGAGGCC
AAGCTGGTAGAAGAAAGACTACGAGTCCAGAGGGAGAAAGAGGAATCGGA
GGAGCAGCAGAGAAAGCTCGTAGAGGCGGAAAGACAGCGCGAAAGAGAGC
AGGCGGAGAAAGAACTGCAGGAACAAAGAGAAGCCGAACGCAGACAGCTA
GAAGCAGAAGAAAATCAGCGTAAACAGCGCGAAAACGAGGAGAAAGAACG
CCTAGAAAACGAAAGAAGGCTGATAGATGCCGAACGGGAAAGGGAGGAGA
ATGAGCGAAGACTGCAAGAAGCTGAAGAGCAGCGCGAGCGAGAAGAAAGC
GAAAGAAGAATCGTCGTGGCAGAGCGTCAGAGAGAGCAGGCCGAAGCCGA
AAAGGAGCGAGCCGAACAACAAAGGATCCTGGCTGAAGCCGAGGCAGCGC
AAGCCGAGCGTCGTCTCTTTGATGCCGAGATTCAGCGAGAGCGCGATCAA
GCTGACGAAGAAGGGCAAGCACTGAGGGATGCGGAGATCGTAGAGCGTCT
TCTGGCAGCAGAAAGAGAGCTCAGTCCAAGCGCTACAGAGAGCGAACTGG
AGGAGGATGCTGCCATCGCAGAGCAGTCGCGTCGCCTGATCTCCAGCAGA
ACTGATCTGGAGCAAAAACAGCGAATGATTGAGGAAAACGCCAGACGCTT
TCTTGAGGCAGAAGAGGAGATGGTAATGTTACAACAGCGCCAACTTCAAG
CCTCACACAGCAAAGAGGAGGCAGACGAGTATGCTGGCATGGAACCCGTG
GTGGAGGAGCTGTGTGTGAAGAAAGTGGCTCCACCCAGGTTTCAGGAGCC
TCCAGAAGAACCCATGGTGCATAAAGTGAAAACTCAATTTGGTCAAGGAA
GTGGTCCTGAAGACGCCTACTCAGCAAAGTCAAAAACACTCACCTTCCCT
GGCGTATCGGATGAAGGATCCTCTCTTGAACCCAAAACTCCGTTCTCCAT
CCAGCAGTCGTCCTTCAGCACGCAGCCCTCTGATGAGGGCAACAGAATCG
AAAGTGAACGCCCAGAACCTGAAGGAGAAGATCAGATACAGGAAGTCCAG
TACACCGAGGACTACCTTCGTTCTCTAGATGGCATTAAGAATCGTCCTTT
GATGCGAGAGGATGGTTCAGGGAGAAGAAGGGCTTTTAAGAAGCGACGAT
CCAGTGGAAGCTCGAACTCCTCGCGGGAATCGCGAGCCTCCCGCGACGAA
GAACTAAAGATGTTCACCTCGCTAGAGGAGGAGGAGTTGCGCCACGGTGA
CCGAGAGGACTATAACCCCATCAAGTATACGAGCGAACCTACCCTGAGGG
TTAAATCCCACCGACGTCACAAAAGGAGTCCAGCAAAGGATGTTAGACCA
ACGGCAGAGTCGACCACATCCTTAGAGATGCTCGGTGAGGAGAGCACAAA
TCCCTGGGGTGAGGTTGTGCCGGAGCATTATAAGGATACCGAGTTTTGGA
AGCGGGAAAAAGCGCTCTCCATAGACGAGGAGGAAATCGAACTAGAAAGA
CCATCCAGGGGAGAGGATGTGGAGGAAGAAGCTACAAATGAGCCAAAATC
GTCCTCCTTTGAAGAGGCCACTGAGGCACAAAACGAACAGGCAGTGGCTG
CCCTAAAACAACAACTTTCCAAGGAGCAGTTGGACAAAGAAGCGGAGAAG
GACAACCCGCAAGCAGTGGATACCAGCGACAGCAACAAATCCAATACAGC
AAGCTTTCTAGACCAT
BO08110.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lmpt-RL | 2085 | CG42679-PL | 1..2082 | 17..2098 | 10395 | 100 | Plus |
| Lmpt-RK | 6444 | CG42679-PK | 1..2079 | 17..2095 | 10380 | 100 | Plus |
| Lmpt-RJ | 2970 | CG42679-PJ | 1..2079 | 17..2095 | 10380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lmpt-RL | 3051 | CG42679-RL | 639..2720 | 17..2098 | 10395 | 100 | Plus |
| Lmpt-RK | 7424 | CG42679-RK | 639..2717 | 17..2095 | 10380 | 100 | Plus |
| Lmpt-RJ | 4501 | CG42679-RJ | 639..2717 | 17..2095 | 10380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16900053..16902069 | 17..2033 | 10070 | 100 | Plus |
| 3L | 28110227 | 3L | 16902128..16902191 | 2032..2095 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:52:57 has no hits.
BO08110.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:30 Download gff for
BO08110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11915-RA | 1..2085 | 17..2101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:05 Download gff for
BO08110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11915-RA | 577..2668 | 8..2098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:50 Download gff for
BO08110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RL | 639..2720 | 17..2100 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:30 Download gff for
BO08110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11915-RA | 577..2668 | 8..2098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:47 Download gff for
BO08110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RL | 639..2720 | 17..2100 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:47 Download gff for
BO08110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16900053..16902068 | 17..2032 | 99 | -> | Plus |
| 3L | 16902129..16902192 | 2033..2100 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:50 Download gff for
BO08110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16893153..16895168 | 17..2032 | 99 | -> | Plus |
| arm_3L | 16895229..16895292 | 2033..2100 | 94 | | Plus |
BO08110.pep Sequence
Translation from 16 to 2116
> BO08110.pep
MAAEETALTGVGELLFSLLIGYLGALEFAFVARHLYHWTFQHPGDSSVDA
AADAEELPRMRERLDKQIKEAAEREALAGTNVMQDGVLYVNGIRVDPAGD
KRQALAAELARQQQIEADTRRQLAEAEAKLVEERLRVQREKEESEEQQRK
LVEAERQREREQAEKELQEQREAERRQLEAEENQRKQRENEEKERLENER
RLIDAEREREENERRLQEAEEQREREESERRIVVAERQREQAEAEKERAE
QQRILAEAEAAQAERRLFDAEIQRERDQADEEGQALRDAEIVERLLAAER
ELSPSATESELEEDAAIAEQSRRLISSRTDLEQKQRMIEENARRFLEAEE
EMVMLQQRQLQASHSKEEADEYAGMEPVVEELCVKKVAPPRFQEPPEEPM
VHKVKTQFGQGSGPEDAYSAKSKTLTFPGVSDEGSSLEPKTPFSIQQSSF
STQPSDEGNRIESERPEPEGEDQIQEVQYTEDYLRSLDGIKNRPLMREDG
SGRRRAFKKRRSSGSSNSSRESRASRDEELKMFTSLEEEELRHGDREDYN
PIKYTSEPTLRVKSHRRHKRSPAKDVRPTAESTTSLEMLGEESTNPWGEV
VPEHYKDTEFWKREKALSIDEEEIELERPSRGEDVEEEATNEPKSSSFEE
ATEAQNEQAVAALKQQLSKEQLDKEAEKDNPQAVDTSDSNKSNTASFLDH
BO08110.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:37:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lmpt-PL | 694 | CG42679-PL | 1..694 | 1..694 | 3465 | 100 | Plus |
| Lmpt-PK | 2147 | CG42679-PK | 1..693 | 1..693 | 3460 | 100 | Plus |
| Lmpt-PJ | 989 | CG42679-PJ | 1..693 | 1..693 | 3460 | 100 | Plus |
| CG2839-PA | 826 | CG2839-PA | 420..679 | 100..368 | 291 | 29.7 | Plus |
| CG2839-PA | 826 | CG2839-PA | 472..727 | 108..368 | 289 | 30 | Plus |
| CG2839-PA | 826 | CG2839-PA | 374..811 | 101..557 | 288 | 24.6 | Plus |
| CG2839-PA | 826 | CG2839-PA | 271..747 | 125..658 | 285 | 23.7 | Plus |
| CG2839-PA | 826 | CG2839-PA | 317..744 | 108..540 | 281 | 23.3 | Plus |
| CG2839-PA | 826 | CG2839-PA | 427..757 | 55..406 | 271 | 26.2 | Plus |
| CG2839-PA | 826 | CG2839-PA | 280..741 | 101..548 | 267 | 23.7 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1351..1703 | 41..371 | 248 | 24 | Plus |
| CG2839-PA | 826 | CG2839-PA | 263..764 | 157..696 | 246 | 24.7 | Plus |
