Clone BO08111 Report

Search the DGRC for BO08111

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:81
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG1785-RA
Protein status:BO08111.pep: validated full length
Sequenced Size:1468

Clone Sequence Records

BO08111.3prime Sequence

883 bp (829 high quality bases) assembled on 2006-01-06

> BO08111.3prime
ATGGTCTAGAAAGCTTGCTATCTTGATATTGGCAGTAGCCTTGGCTGCAG
CGGCGGCCGCCCTGCGCCGTTCCTTGAGGTCATTATAGCTAACGCCCGGC
TCCTTGTGGGAGTTGCGCTCGAAGCGCTTGACCTTGGACTTCTTGCGGCT
GACGAGCTTTGTCGTGGGCAACATATTGTTGCGTTGCAGCGTGTGGAAGC
GGTCCTTCAGCAGACTGCTCTCAGTCTTCACGTTGCGCAGATTTCCGGCG
ATATCCTCGGGCAGATTTACGTCTAGGTCTGGCTCCTCGAACTTGTGACG
CCCCAGGCGTTTCGGCTCAAACTTGGCCTTCTCGGCGCGCTGCTTGCGGC
GCTTCTTTAGATCATTCAGGTCCTCCTCCTCATCGTCTAGCTCGTGGCGA
ATCGATTTGATGCGTATCAGGTCAGCCGTCTGTTGCTTGAGCTTCCTCTT
GAGCTCTGTTTGACGCGCCAGCTCCTTTTGCTTGAGCTCGTTGCGGCGAG
CCTGCTTGCTCTTCTTTTTGTTCTCCACGGGAGCGTTGATTGTGTGATAT
GGCTTTTCATCATCGTCCTCCTTTTTCTTCCCATTCGTTTGGACATCCTC
ATCGAGCTCACTACCCTCCTCCTCGTCCATGCCTTGGCTCATTTCATTTA
GGCGACGACGATCTCTCTCCTCGGGCGTCACCTTGGAGAACATGCTGGTG
GTCACGCGCTTAAGGTGCTGTTCCTTCTTAATGATGCCCTCCTCGCGTTC
CACCACCTGATCAATAAGCGCCTGATGATCCTCGGGTGCGGGATTGTAGC
TCATGCCCGGATGCGGGAGTTCGAATTTCTTGGCTTTGGTGGTTTTGTGG
TGCAGACTAGCGTGAGTTTTCACCACCTTCTTG

BO08111.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1785-PA 1437 CG1785-RA 570..1434 883..19 4325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1785-RA 1885 CG1785-RA 663..1527 883..19 4325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8715835..8716251 829..413 2085 100 Minus
X 23542271 X 8716313..8716707 413..19 1975 100 Minus
X 23542271 X 8715719..8715773 883..829 275 100 Minus
Blast to na_te.dros performed on 2015-02-13 16:34:35 has no hits.

BO08111.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:11 Download gff for BO08111.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1785-PA 570..1437 18..883 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:34 Download gff for BO08111.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1785-PA 570..1437 18..883 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:13:56 Download gff for BO08111.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 663..1532 11..883 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:21:44 Download gff for BO08111.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 663..1532 11..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:21:44 Download gff for BO08111.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8715835..8716251 413..829 100 -> Minus
X 8715719..8715772 830..883 100 -> Minus
X 8716314..8716712 11..412 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:13:56 Download gff for BO08111.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8609752..8609805 830..883 100 -> Minus
arm_X 8609868..8610284 413..829 100 -> Minus
arm_X 8610347..8610745 11..412 99   Minus

BO08111.5prime Sequence

849 bp (821 high quality bases) assembled on 2006-01-06

> BO08111.5prime
GAAGTTATCAGTCGACATGACGGCCGTAGAGCCAGCGACAAAGAAGAAGC
GCATCTCGAAGAAGAACAAATCGGCATGGCGCAAAACAGACATCCAGGAT
GTCGAGCAGTTCCTCGAAGATCAGCGCCAGGAGGAGCGCGTTGGAACGTT
CGCGGATAAACAGGATGAGGATCTGTTCGTTGTGGACTCCAGCCTCCCGA
AGACCAAGGCCACCGTTCTGAGTGTGAAGCAAAAGCGGAAGCTGAATGCC
AAGAAGCCCATGCGCAGTTACCAGGCTTTGGAGAACACATCCAAAGTCCA
AGATCCCATTGCCAAGCGCAACCATGTGCGCCAGAAGAAGAACGGACGTA
ACATCGAGCTGGAGGTGTGCAATCCAACCAAGCCGCGCCATCGCCAGGCC
AACAGCGATCGAGCTCAGTACTACGTAAAACTGGAACAGCGTCTGGCCGA
CAAGAAGAACAAGAAGCTTGATGTCGAGAAGGACATCTGGCAGGAGGTGG
ATTTTCGCGACGAGATTCCTGGACTCAAGGACGAGAAGGGTTGGATCAGT
CGCGAACTGGCACTGCACACAGCTGGAAATATTGGCAAGAAGGTGGTGAA
AACTCACGCTAGTCTGCACCACAAAACCACCAAAGCCAAGAAATTCGAAC
TCCCGCATCCGGGCATGAGCTACAATCCCGCACCCGAGGATCATCAGGCG
CTTATTGATCAGGTGGTGGAACGCGAGGAGGGCATCATTAAGAAGGAACA
GCACCTTAAGCGCGTGACCACCAGCATGTTCTCCAAGGTGACGCCCGAGG
AGAGAGATCGTCGTCGCCTAAATGAAATGAGCCAAGGCATGGACGAGGA

BO08111.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1785-PA 1437 CG1785-RA 1..833 17..849 4165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1785-RA 1885 CG1785-RA 94..926 17..849 4165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8715451..8715773 318..640 1615 100 Plus
X 23542271 X 8715835..8716044 640..849 1050 100 Plus
X 23542271 X 8715221..8715395 144..318 875 100 Plus
X 23542271 X 8715029..8715156 17..144 640 100 Plus
Blast to na_te.dros performed on 2015-02-04 20:35:10 has no hits.

BO08111.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:12 Download gff for BO08111.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1785-PA 1..832 17..848 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:35 Download gff for BO08111.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1785-PA 1..832 17..848 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:27:41 Download gff for BO08111.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 84..925 7..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:52:08 Download gff for BO08111.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 84..925 7..848 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:52:08 Download gff for BO08111.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8715019..8715156 7..144 97 -> Plus
X 8715222..8715395 145..318 100 -> Plus
X 8715452..8715772 319..639 100 -> Plus
X 8715835..8716043 640..848 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:27:41 Download gff for BO08111.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8609052..8609189 7..144 97 -> Plus
arm_X 8609255..8609428 145..318 100 -> Plus
arm_X 8609485..8609805 319..639 100 -> Plus
arm_X 8609868..8610076 640..848 100   Plus

BO08111.complete Sequence

1468 bp (1468 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631057

> BO08111.complete
GAAGTTATCAGTCGACATGACGGCCGTAGAGCCAGCGACAAAGAAGAAGC
GCATCTCGAAGAAGAACAAATCGGCATGGCGCAAAACAGACATCCAGGAT
GTCGAGCAGTTCCTCGAAGATCAGCGCCAGGAGGAGCGCGTTGGAACGTT
CGCGGATAAACAGGATGAGGATCTGTTCGTTGTGGACTCCAGCCTCCCGA
AGACCAAGGCCACCGTTCTGAGTGTGAAGCAAAAGCGGAAGCTGAATGCC
AAGAAGCCCATGCGCAGTTACCAGGCTTTGGAGAACACATCCAAAGTCCA
AGATCCCATTGCCAAGCGCAACCATGTGCGCCAGAAGAAGAACGGACGTA
ACATCGAGCTGGAGGTGTGCAATCCAACCAAGCCGCGCCATCGCCAGGCC
AACAGCGATCGAGCTCAGTACTACGTAAAACTGGAACAGCGTCTGGCCGA
CAAGAAGAACAAGAAGCTTGATGTCGAGAAGGACATCTGGCAGGAGGTGG
ATTTTCGCGACGAGATTCCTGGACTCAAGGACGAGAAGGGTTGGATCAGT
CGCGAACTGGCACTGCACACAGCTGGAAATATTGGCAAGAAGGTGGTGAA
AACTCACGCTAGTCTGCACCACAAAACCACCAAAGCCAAGAAATTCGAAC
TCCCGCATCCGGGCATGAGCTACAATCCCGCACCCGAGGATCATCAGGCG
CTTATTGATCAGGTGGTGGAACGCGAGGAGGGCATCATTAAGAAGGAACA
GCACCTTAAGCGCGTGACCACCAGCATGTTCTCCAAGGTGACGCCCGAGG
AGAGAGATCGTCGTCGCCTAAATGAAATGAGCCAAGGCATGGACGAGGAG
GAGGGTAGTGAGCTCGATGAGGATGTCCAAACGAATGGGAAGAAAAAGGA
GGACGATGATGAAAAGCCATATCACACAATCAACGCTCCCGTGGAGAACA
AAAAGAAGAGCAAGCAGGCTCGCCGCAACGAGCTCAAGCAAAAGGAGCTG
GCGCGTCAAACAGAGCTCAAGAGGAAGCTCAAGCAACAGACGGCTGACCT
GATACGCATCAAATCGATTCGCCACGAGCTAGACGATGAGGAGGAGGACC
TGAATGATCTAAAGAAGCGCCGCAAGCAGCGCGCCGAGAAGGCCAAGTTT
GAGCCGAAACGCCTGGGGCGTCACAAGTTCGAGGAGCCAGACCTAGACGT
AAATCTGCCCGAGGATATCGCCGGAAATCTGCGCAACGTGAAGACTGAGA
GCAGTCTGCTGAAGGACCGCTTCCACACGCTGCAACGCAACAATATGTTG
CCCACGACAAAGCTCGTCAGCCGCAAGAAGTCCAAGGTCAAGCGCTTCGA
GCGCAACTCCCACAAGGAGCCGGGCGTTAGCTATAATGACCTCAAGGAAC
GGCGCAGGGCGGCCGCCGCTGCAGCCAAGGCTACTGCCAATATCAAGATA
GCAAGCTTTCTAGACCAT

BO08111.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1785-RA 1437 CG1785-PA 1..1434 17..1450 7170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1785-RA 1885 CG1785-RA 94..1527 17..1450 7170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8715835..8716251 640..1056 2085 100 Plus
X 23542271 X 8716313..8716707 1056..1450 1975 100 Plus
X 23542271 X 8715451..8715773 318..640 1615 100 Plus
X 23542271 X 8715221..8715395 144..318 875 100 Plus
X 23542271 X 8715029..8715156 17..144 640 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:36:31 has no hits.

BO08111.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:15 Download gff for BO08111.complete
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 1..1437 17..1451 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:24 Download gff for BO08111.complete
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 69..1517 7..1458 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:42 Download gff for BO08111.complete
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 94..1527 17..1452 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:15 Download gff for BO08111.complete
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 69..1517 7..1458 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:24 Download gff for BO08111.complete
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 94..1527 17..1452 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:24 Download gff for BO08111.complete
Subject Subject Range Query Range Percent Splice Strand
X 8715452..8715772 319..639 100 -> Plus
X 8715029..8715156 17..144 100 -> Plus
X 8715222..8715395 145..318 100 -> Plus
X 8715835..8716251 640..1056 100 -> Plus
X 8716314..8716707 1057..1452 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:42 Download gff for BO08111.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8609062..8609189 17..144 100 -> Plus
arm_X 8609255..8609428 145..318 100 -> Plus
arm_X 8609485..8609805 319..639 100 -> Plus
arm_X 8610347..8610740 1057..1452 99   Plus
arm_X 8609868..8610284 640..1056 100 -> Plus

BO08111.pep Sequence

Translation from 16 to 1468

> BO08111.pep
MTAVEPATKKKRISKKNKSAWRKTDIQDVEQFLEDQRQEERVGTFADKQD
EDLFVVDSSLPKTKATVLSVKQKRKLNAKKPMRSYQALENTSKVQDPIAK
RNHVRQKKNGRNIELEVCNPTKPRHRQANSDRAQYYVKLEQRLADKKNKK
LDVEKDIWQEVDFRDEIPGLKDEKGWISRELALHTAGNIGKKVVKTHASL
HHKTTKAKKFELPHPGMSYNPAPEDHQALIDQVVEREEGIIKKEQHLKRV
TTSMFSKVTPEERDRRRLNEMSQGMDEEEGSELDEDVQTNGKKKEDDDEK
PYHTINAPVENKKKSKQARRNELKQKELARQTELKRKLKQQTADLIRIKS
IRHELDDEEEDLNDLKKRRKQRAEKAKFEPKRLGRHKFEEPDLDVNLPED
IAGNLRNVKTESSLLKDRFHTLQRNNMLPTTKLVSRKKSKVKRFERNSHK
EPGVSYNDLKERRRAAAAAAKATANIKIASFLDH

BO08111.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1785-PA 478 CG1785-PA 1..478 1..478 2451 100 Plus