Clone Sequence Records
BO08115.3prime Sequence
884 bp (766 high quality bases) assembled on 2006-01-06
> BO08115.3prime
ATGGTCTAGAAAGCTTGCAAAGGGAGTCTTTTCGCGATGAAGCGAATTTC
TTGATCCACTAACGGACCTCGATGGCAAATGGATGGTCTTCATGTGCCGG
CAGGTGGGACAAACCACGTTCAACGTGTCCTTAACCATTTGTGGCGGTGT
GTAGAAGAATGCAATTATGTCCACGCTATCCTCGGCGAAAACCAGATCCA
GCAGACTCCGCACGCGCAACCAATCCAAACGGTCGATGCCGCATCCAAGT
CTGGGAATGGCCAACTTGGTCACTCCGTGCTCCCTCATATGTTCCCGCAT
GGCCAGCAATGCGTAGTAGAGAGCTGCGTAAGTGCACTTTTCGTGGCTGC
GCTCCTTGGTCACCAGGTTGTAGATATGTCTACCATCCTGCTCCAGAACT
GCCACATTTCCGGTATGCTTGTGTTGGCGCTTCAGCTCATCCACTTGTCC
GAATTTGCAGCGGAACTGCAGATTTATGCCCGCACACATAGCGAAGTCCG
CACTGACAGAGTGCACTAAGGCGTAGTTTTCCGGGGCGCTGAACAGGTTC
CCCCTGGCCTCCGTAATCTGACACTTGGGAGCAGCCAGCTCCTTGGACAT
GTCTTCGTGCTCACAGATGAGTATCTCGATGGGATACTCGCTCTGGGAGA
AGGTCTGCTGCACCAGACGCTTCACGTGCTTCCATTCAAGTCCATCGTTG
CCGCAGCAGATTCGGGGCATAGCCACTTTGGTGATCTCATGGTTGCGCAT
ATGCTCCCGCATGCAGATCAAAGCTGCCTGGACATCGCCGTAAGTGCTGG
CCTCGTAGAGACTCGACTTGGTCACCAGATAGTATATGAATCGGGCATTG
TGCTCCAGAACGGCACAGTTGCCTCTGGAACACT
BO08115.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33056-PA | 1032 | CG33056-RA | 168..1029 | 880..19 | 4310 | 100 | Minus |
| CG33056-PB | 1032 | CG33056-RB | 168..1029 | 880..19 | 4310 | 100 | Minus |
| CG33056-PD | 1032 | CG33056-RD | 168..1029 | 880..19 | 4310 | 100 | Minus |
| CG33056-PE | 1032 | CG33056-RE | 168..1029 | 880..19 | 4310 | 100 | Minus |
| CG33056-PC | 963 | CG33056-RC | 300..960 | 679..19 | 3305 | 100 | Minus |
| CG33056-PC | 963 | CG33056-RC | 168..301 | 880..747 | 670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:34:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33056-RE | 1448 | CG33056-RE | 386..1247 | 880..19 | 4310 | 100 | Minus |
| CG33056-RD | 1558 | CG33056-RD | 496..1357 | 880..19 | 4310 | 100 | Minus |
| CG33056-RB | 1519 | CG33056-RB | 457..1318 | 880..19 | 4310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:34:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21198881..21199185 | 286..590 | 1525 | 100 | Plus |
| 3L | 28110227 | 3L | 21198462..21198729 | 19..286 | 1340 | 100 | Plus |
| 3L | 28110227 | 3L | 21199246..21199405 | 589..748 | 800 | 100 | Plus |
| 3L | 28110227 | 3L | 21199995..21200127 | 748..880 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:34:47 has no hits.
BO08115.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:19 Download gff for
BO08115.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33056-PD | 163..1032 | 15..884 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:44 Download gff for
BO08115.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33056-PE | 163..1032 | 15..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:10:13 Download gff for
BO08115.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33056-RB | 452..1321 | 15..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:54:00 Download gff for
BO08115.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33056-RB | 452..1321 | 15..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:54:00 Download gff for
BO08115.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21199246..21199404 | 589..747 | 100 | <- | Plus |
| 3L | 21199995..21200132 | 748..884 | 99 | | Plus |
| 3L | 21198459..21198728 | 15..285 | 99 | <- | Plus |
| 3L | 21198881..21199183 | 286..588 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:10:13 Download gff for
BO08115.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21191559..21191828 | 15..285 | 99 | <- | Plus |
| arm_3L | 21191981..21192283 | 286..588 | 100 | <- | Plus |
| arm_3L | 21192346..21192504 | 589..747 | 100 | <- | Plus |
| arm_3L | 21193095..21193232 | 748..884 | 99 | | Plus |
BO08115.5prime Sequence
889 bp (881 high quality bases) assembled on 2006-01-06
> BO08115.5prime
GAAGTTATCAGTCGACATGGCGAACGTGAAGATAGTGGAGTCCAAGCTGG
ACATATTCCACGCACCGCAGACACATTCCTTGGCCCATGCCGTAGAGTCA
TCCTTTACGGCGGAACGGGGAACTCTCGCCTGGCAGTTTGCCCTGATCTA
CGGGGATGTGGATGAACTACGGCAAAGAAGTGTTTCCAGAGGCAACTGTG
CCGTTCTGGAGCACAATGCCCGATTCATATACTATCTGGTGACCAAGTCG
AGTCTCTACGAGGCCAGCACTTACGGCGATGTCCAGGCAGCTTTGATCTG
CATGCGGGAGCATATGCGCAACCATGAGATCACCAAAGTGGCTATGCCCC
GAATCTGCTGCGGCAACGATGGACTTGAATGGAAGCACGTGAAGCGTCTG
GTGCAGCAGACCTTCTCCCAGAGCGAGTATCCCATCGAGATACTCATCTG
TGAGCACGAAGACATGTCCAAGGAGCTGGCTGCTCCCAAGTGTCAGATTA
CGGAGGCCAGGGGGAACCTGTTCAGCGCCCCGGAAAACTACGCCTTAGTG
CACTCTGTCAGTGCGGACTTCGCTATGTGTGCGGGCATAAATCTGCAGTT
CCGCTGCAAATTCGGACAAGTGGATGAGCTGAAGCGCCAACACAAGCATA
CCGGAAATGTGGCAGTTCTGGAGCAGGATGGTAGACATATCTACAACCTG
GTGACCAAGGAGCGCAGCCACGAAAAGTGCACTTACGCAGCTCTCTACTA
CGCATTGCTGGCCATGCGGGAACATATGAGGGAGCACGGAGTGACCAAGT
TGGCCATTCCCAGACTTGGATGCGGCATCGACCGTTTGGATTGGTTGCGC
GTGCGGAGTCTGCTGGATCTGGTTTTCGCCGAGGATAGC
BO08115.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33056-PA | 1032 | CG33056-RA | 1..873 | 17..889 | 4365 | 100 | Plus |
| CG33056-PB | 1032 | CG33056-RB | 1..873 | 17..889 | 4365 | 100 | Plus |
| CG33056-PD | 1032 | CG33056-RD | 1..873 | 17..889 | 4365 | 100 | Plus |
| CG33056-PE | 1032 | CG33056-RE | 1..873 | 17..889 | 4365 | 100 | Plus |
| CG33056-PC | 963 | CG33056-RC | 300..804 | 385..889 | 2525 | 100 | Plus |
| CG33056-PC | 963 | CG33056-RC | 1..301 | 17..317 | 1505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:33:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33056-RE | 1448 | CG33056-RE | 218..1091 | 16..889 | 4370 | 100 | Plus |
| CG33056-RD | 1558 | CG33056-RD | 328..1201 | 16..889 | 4370 | 100 | Plus |
| CG33056-RB | 1519 | CG33056-RB | 289..1162 | 16..889 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:32:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21198881..21199185 | 778..474 | 1525 | 100 | Minus |
| 3L | 28110227 | 3L | 21199995..21200295 | 316..16 | 1505 | 100 | Minus |
| 3L | 28110227 | 3L | 21199246..21199405 | 475..316 | 800 | 100 | Minus |
| 3L | 28110227 | 3L | 21198618..21198729 | 889..778 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:33:00 has no hits.
BO08115.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:20 Download gff for
BO08115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33056-PD | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:46 Download gff for
BO08115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33056-PE | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:50:17 Download gff for
BO08115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33056-RB | 282..1162 | 10..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:10 Download gff for
BO08115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33056-RB | 282..1162 | 10..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:10 Download gff for
BO08115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21199995..21200302 | 10..316 | 99 | | Minus |
| 3L | 21198618..21198728 | 779..889 | 100 | <- | Minus |
| 3L | 21198881..21199183 | 476..778 | 100 | <- | Minus |
| 3L | 21199246..21199404 | 317..475 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:50:17 Download gff for
BO08115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21191718..21191828 | 779..889 | 100 | <- | Minus |
| arm_3L | 21191981..21192283 | 476..778 | 100 | <- | Minus |
| arm_3L | 21192346..21192504 | 317..475 | 100 | <- | Minus |
| arm_3L | 21193095..21193402 | 10..316 | 99 | | Minus |
BO08115.complete Sequence
1063 bp (1063 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631058
> BO08115.complete
GAAGTTATCAGTCGACATGGCGAACGTGAAGATAGTGGAGTCCAAGCTGG
ACATATTCCACGCACCGCAGACACATTCCTTGGCCCATGCCGTAGAGTCA
TCCTTTACGGCGGAACGGGGAACTCTCGCCTGGCAGTTTGCCCTGATCTA
CGGGGATGTGGATGAACTACGGCAAAGAAGTGTTTCCAGAGGCAACTGTG
CCGTTCTGGAGCACAATGCCCGATTCATATACTATCTGGTGACCAAGTCG
AGTCTCTACGAGGCCAGCACTTACGGCGATGTCCAGGCAGCTTTGATCTG
CATGCGGGAGCATATGCGCAACCATGAGATCACCAAAGTGGCTATGCCCC
GAATCTGCTGCGGCAACGATGGACTTGAATGGAAGCACGTGAAGCGTCTG
GTGCAGCAGACCTTCTCCCAGAGCGAGTATCCCATCGAGATACTCATCTG
TGAGCACGAAGACATGTCCAAGGAGCTGGCTGCTCCCAAGTGTCAGATTA
CGGAGGCCAGGGGGAACCTGTTCAGCGCCCCGGAAAACTACGCCTTAGTG
CACTCTGTCAGTGCGGACTTCGCTATGTGTGCGGGCATAAATCTGCAGTT
CCGCTGCAAATTCGGACAAGTGGATGAGCTGAAGCGCCAACACAAGCATA
CCGGAAATGTGGCAGTTCTGGAGCAGGATGGTAGACATATCTACAACCTG
GTGACCAAGGAGCGCAGCCACGAAAAGTGCACTTACGCAGCTCTCTACTA
CGCATTGCTGGCCATGCGGGAACATATGAGGGAGCACGGAGTGACCAAGT
TGGCCATTCCCAGACTTGGATGCGGCATCGACCGTTTGGATTGGTTGCGC
GTGCGGAGTCTGCTGGATCTGGTTTTCGCCGAGGATAGCGTGGACATAAT
TGCATTCTTCTACACACCGCCACAAATGGTTAAGGACACGTTGAACGTGG
TTTGTCCCACCTGCCGGCACATGAAGACCATCCATTTGCCATCGAGGTCC
GTTAGTGGATCAAGAAATTCGCTTCATCGCGAAAAGACTCCCTTTGCAAG
CTTTCTAGACCAT
BO08115.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33056-RE | 1032 | CG33056-PE | 1..1029 | 17..1045 | 5145 | 100 | Plus |
| CG33056-RD | 1032 | CG33056-PD | 1..1029 | 17..1045 | 5145 | 100 | Plus |
| CG33056-RB | 1032 | CG33056-PB | 1..1029 | 17..1045 | 5145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33056-RE | 1448 | CG33056-RE | 218..1247 | 16..1045 | 5150 | 100 | Plus |
| CG33056-RD | 1558 | CG33056-RD | 328..1357 | 16..1045 | 5150 | 100 | Plus |
| CG33056-RB | 1519 | CG33056-RB | 289..1318 | 16..1045 | 5150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21198881..21199185 | 778..474 | 1525 | 100 | Minus |
| 3L | 28110227 | 3L | 21199995..21200295 | 316..16 | 1505 | 100 | Minus |
| 3L | 28110227 | 3L | 21198462..21198729 | 1045..778 | 1340 | 100 | Minus |
| 3L | 28110227 | 3L | 21199246..21199405 | 475..316 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:34:01 has no hits.
BO08115.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:16 Download gff for
BO08115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33056-RD | 1..1032 | 17..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:26 Download gff for
BO08115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33056-RD | 316..1355 | 10..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:36 Download gff for
BO08115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33056-RB | 290..1318 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:16 Download gff for
BO08115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33056-RD | 316..1355 | 10..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:23 Download gff for
BO08115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33056-RB | 290..1318 | 17..1047 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:23 Download gff for
BO08115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21198460..21198728 | 779..1047 | 99 | <- | Minus |
| 3L | 21198881..21199183 | 476..778 | 100 | <- | Minus |
| 3L | 21199246..21199404 | 317..475 | 100 | <- | Minus |
| 3L | 21199995..21200294 | 17..316 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:36 Download gff for
BO08115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21191560..21191828 | 779..1047 | 99 | <- | Minus |
| arm_3L | 21191981..21192283 | 476..778 | 100 | <- | Minus |
| arm_3L | 21192346..21192504 | 317..475 | 100 | <- | Minus |
| arm_3L | 21193095..21193394 | 17..316 | 100 | | Minus |
BO08115.pep Sequence
Translation from 16 to 1063
> BO08115.pep
MANVKIVESKLDIFHAPQTHSLAHAVESSFTAERGTLAWQFALIYGDVDE
LRQRSVSRGNCAVLEHNARFIYYLVTKSSLYEASTYGDVQAALICMREHM
RNHEITKVAMPRICCGNDGLEWKHVKRLVQQTFSQSEYPIEILICEHEDM
SKELAAPKCQITEARGNLFSAPENYALVHSVSADFAMCAGINLQFRCKFG
QVDELKRQHKHTGNVAVLEQDGRHIYNLVTKERSHEKCTYAALYYALLAM
REHMREHGVTKLAIPRLGCGIDRLDWLRVRSLLDLVFAEDSVDIIAFFYT
PPQMVKDTLNVVCPTCRHMKTIHLPSRSVSGSRNSLHREKTPFASFLDH
BO08115.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33056-PE | 343 | CG33056-PE | 1..343 | 1..343 | 1809 | 100 | Plus |
| CG33056-PD | 343 | CG33056-PD | 1..343 | 1..343 | 1809 | 100 | Plus |
| CG33056-PB | 343 | CG33056-PB | 1..343 | 1..343 | 1809 | 100 | Plus |
| CG33056-PA | 343 | CG33056-PA | 1..343 | 1..343 | 1809 | 100 | Plus |
| CG33056-PC | 320 | CG33056-PC | 1..320 | 1..343 | 1641 | 93.3 | Plus |
