Clone Sequence Records
BO08116.3prime Sequence
803 bp (801 high quality bases) assembled on 2006-01-06
> BO08116.3prime
ATGGTCTAGAAAGCTTGCCACCGAATTAGATCTTATGCTAATCGGCCAAA
TCTTCAGTTCAGCCTGAAGCAGTTGCTTTTTGTCCAGGATCCTATCTCTT
TTTCGTTTCGATCGGCTCTGCAACTGCAATTCATGATCCTTTTGTGAAGA
AAAGGGTTTGGGATATGGAGCTACAGCCTGAGCCCTTTTTCTGCGATATC
TTAACATGTTTGTAATGGCATTTATGCGCAAATCAGGCTGAATGGCGTGT
CTACCACTTCGAGGTTGCTGTTGCAAAGACTTTGGCTGTTCCATATTTTC
ATTTTGTACATTCAGAGAAAAGCTGATGACATTTGGAGTCCCAGCGACAC
CGTGATTCTTTGGCTTGGTGCAACATGGAAGTTTTCTTGTCGTACTTTTG
GTAGCACGCGTTGTCAAAGGTTTTTGGGTGGTAGTCTTGCCGATTGGAGG
CTTAGTTGCCTTCGTTTTTGGAGCCAAAGATGGTTTAACAGTGCTTGTTG
TTGTAGATTCCCGCTCCTCGTTCTTAACATCGACGGATATCGAATCCTCC
TCTTCATTTTTATTGGAGTCACAAGCCTCGGTAGTCGCAAACGCTTCGCA
TTCTCCTTTTCCCTCATTTTGATCCACTTCAGCGCAATTCATTGCCTCCT
GCGGTCGCACCTGTTGTTGCATCTGCTGTCGCTGGCCAAAGAACTCGGAC
AACTGTTGCAGCAACTCGAGCTGCTCGGCAGTTGGCGCCGGATCGTGTGT
CTCCTGTCGTTCCTGCTGCTTTGGCAATGGCACAAATGGCGGCTGGAATA
GAT
BO08116.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33278-PA | 1197 | CG33278-RA | 410..1194 | 803..19 | 3925 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33278-RA | 1307 | CG33278-RA | 466..1250 | 803..19 | 3925 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7451318..7452102 | 803..19 | 3925 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:37:54 has no hits.
BO08116.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:21 Download gff for
BO08116.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-PA | 410..1197 | 15..803 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:47 Download gff for
BO08116.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-PA | 410..1197 | 15..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:38:33 Download gff for
BO08116.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-RA | 466..1253 | 15..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:10 Download gff for
BO08116.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-RA | 466..1253 | 15..803 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:10 Download gff for
BO08116.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7451318..7452105 | 15..803 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:38:33 Download gff for
BO08116.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7444418..7445205 | 15..803 | 99 | | Minus |
BO08116.5prime Sequence
886 bp (811 high quality bases) assembled on 2006-01-06
> BO08116.5prime
GAAGTTATCAGTCGACATGAGTCACGTTGCCACTCTTTTGGCCATTGCAA
GCGTATTCAGTGTCGTTCGGGGTCAACAGCAAGTTATGCCAAAGCCCGTG
GCGGAAATCCCTTCACCGCAGCCTCTGCCCGCGGATTACGTGAAGGGAAT
ACTTAGCCTGAAGAGCAGTCTGCTGACCAACAAGCAGGCCTTGGGTTACG
CCACCAGTCAGGAGGTGAACGGCCCCGCTTCCGTATCCGGAATCAGACCT
GGTATGCGATATACACAGCAGTTGGACGTACAGCAGACGCAAAGCCAGCC
GTTGCAGGAGATTCAGGTTGAACCCGTTGCCAATCTGAGGCCATCAGCGA
TAGCTCAGAGCAGCCTTCAATCCCAGATGCCGTCGGCCAAGTTGAATCGA
TATAACCAGGAGTTCCCCGCCTTTCATCTATTCCAGCCGCCATTTGTGCC
ATTGCCAAAGCAGCAGGAACGACAGGAGACACACGATCCGGCGCCAACTG
CCGAGCAGCTCGAGTTGCTGCAACAGTTGTCCGAGTTCTTTGGCCAGCGA
CAGCAGATGCAACAACAGGTGCGACCGCAGGAGGCAATGAATTGCGCTGA
AGTGGATCAAAATGAGGGAAAAGGAGAATGCGAAGCGTTTGCGACTACCG
AGGCTTGTGACTCCAATAAAAATGAAGAGGAGGATTCGATATCCGTCGAT
GTTAAGAACGAGGAGCGGGAATCTACAACAACAAGCACTGTTAAACCATC
TTTGGCTCCAAAAACGAAGGCAACTAAGCCTCCAATCGGCAAGACTACCA
CCCAAAAACCTTTGAACACGCGTGCTACCAAAAGTACGACAAGAAAACTT
CCATGTTGCACCAAGCCAAAGAATCACGGTGTCGCT
BO08116.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33278-PA | 1197 | CG33278-RA | 1..870 | 17..886 | 4300 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:46:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33278-RA | 1307 | CG33278-RA | 57..926 | 17..886 | 4320 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:46:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7450909..7451778 | 17..886 | 4320 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:46:16 has no hits.
BO08116.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:22 Download gff for
BO08116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-PA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:50 Download gff for
BO08116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-PA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:09:28 Download gff for
BO08116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-RA | 51..926 | 10..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:22:56 Download gff for
BO08116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-RA | 51..926 | 10..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:22:56 Download gff for
BO08116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7450903..7451778 | 10..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:09:28 Download gff for
BO08116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7444003..7444878 | 10..886 | 99 | | Plus |
BO08116.complete Sequence
1228 bp (1228 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631059
> BO08116.complete
GAAGTTATCAGTCGACATGAGTCACGTTGCCACTCTTTTGGCCATTGCAA
GCGTATTCAGTGTCGTTCGGGGTCAACAGCAAGTTATGCCAAAGCCCGTG
GCGGAAATCCCTTCACCGCAGCCTCTGCCCGCGGATTACGTGAAGGGAAT
ACTTAGCCTGAAGAGCAGTCTGCTGACCAACAAGCAGGCCTTGGGTTACG
CCACCAGTCAGGAGGTGAACGGCCCCGCTTCCGTATCCGGAATCAGACCT
GGTATGCGATATACACAGCAGTTGGACGTACAGCAGACGCAAAGCCAGCC
GTTGCAGGAGATTCAGGTTGAACCCGTTGCCAATCTGAGGCCATCAGCGA
TAGCTCAGAGCAGCCTTCAATCCCAGATGCCGTCGGCCAAGTTGAATCGA
TATAACCAGGAGTTCCCCGCCTTTCATCTATTCCAGCCGCCATTTGTGCC
ATTGCCAAAGCAGCAGGAACGACAGGAGACACACGATCCGGCGCCAACTG
CCGAGCAGCTCGAGTTGCTGCAACAGTTGTCCGAGTTCTTTGGCCAGCGA
CAGCAGATGCAACAACAGGTGCGACCGCAGGAGGCAATGAATTGCGCTGA
AGTGGATCAAAATGAGGGAAAAGGAGAATGCGAAGCGTTTGCGACTACCG
AGGCTTGTGACTCCAATAAAAATGAAGAGGAGGATTCGATATCCGTCGAT
GTTAAGAACGAGGAGCGGGAATCTACAACAACAAGCACTGTTAAACCATC
TTTGGCTCCAAAAACGAAGGCAACTAAGCCTCCAATCGGCAAGACTACCA
CCCAAAAACCTTTGACAACGCGTGCTACCAAAAGTACGACAAGAAAACTT
CCATGTTGCACCAAGCCAAAGAATCACGGTGTCGCTGGGACTCCAAATGT
CATCAGCTTTTCTCTGAATGTACAAAATGAAAATATGGAACAGCCAAAGT
CTTTGCAACAGCAACCTCGAAGTGGTAGACACGCCATTCAGCCTGATTTG
CGCATAAATGCCATTACAAACATGTTAAGATATCGCAGAAAAAGGGCTCA
GGCTGTAGCTCCATATCCCAAACCCTTTTCTTCACAAAAGGATCATGAAT
TGCAGTTGCAGAGCCGATCGAAACGAAAAAGAGATAGGATCCTGGACAAA
AAGCAACTGCTTCAGGCTGAACTGAAGATTTGGCCGATTAGCATAAGATC
TAATTCGGTGGCAAGCTTTCTAGACCAT
BO08116.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33278-RA | 1197 | CG33278-PA | 1..1194 | 17..1210 | 5970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33278-RA | 1307 | CG33278-RA | 57..1250 | 17..1210 | 5970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7450909..7452102 | 17..1210 | 5970 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:06:21 has no hits.
BO08116.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:03 Download gff for
BO08116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-RA | 1..1197 | 17..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:10 Download gff for
BO08116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-RA | 51..1253 | 10..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:14 Download gff for
BO08116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-RA | 57..1250 | 17..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:03 Download gff for
BO08116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-RA | 51..1253 | 10..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:40 Download gff for
BO08116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-RA | 57..1250 | 17..1212 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:40 Download gff for
BO08116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7450909..7452102 | 17..1212 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:14 Download gff for
BO08116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7444009..7445202 | 17..1212 | 99 | | Plus |
BO08116.pep Sequence
Translation from 16 to 1228
> BO08116.pep
MSHVATLLAIASVFSVVRGQQQVMPKPVAEIPSPQPLPADYVKGILSLKS
SLLTNKQALGYATSQEVNGPASVSGIRPGMRYTQQLDVQQTQSQPLQEIQ
VEPVANLRPSAIAQSSLQSQMPSAKLNRYNQEFPAFHLFQPPFVPLPKQQ
ERQETHDPAPTAEQLELLQQLSEFFGQRQQMQQQVRPQEAMNCAEVDQNE
GKGECEAFATTEACDSNKNEEEDSISVDVKNEERESTTTSTVKPSLAPKT
KATKPPIGKTTTQKPLTTRATKSTTRKLPCCTKPKNHGVAGTPNVISFSL
NVQNENMEQPKSLQQQPRSGRHAIQPDLRINAITNMLRYRRKRAQAVAPY
PKPFSSQKDHELQLQSRSKRKRDRILDKKQLLQAELKIWPISIRSNSVAS
FLDH
BO08116.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33278-PA | 398 | CG33278-PA | 1..398 | 1..398 | 2032 | 100 | Plus |
