Clone BO08117 Report

Search the DGRC for BO08117

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:81
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG12333-RA
Protein status:BO08117.pep: validated full length
Sequenced Size:1495

Clone Sequence Records

BO08117.3prime Sequence

868 bp (867 high quality bases) assembled on 2006-01-06

> BO08117.3prime
ATGGTCTAGAAAGCTTGCATTGTCCTTCGGAAGAACGATGGACCAGCCGA
AAACGCGGCGATCGAAGCCGCAGGAGAAGAGATCGCAGTCCAGCAGCGGC
TCCTCCGCCCACGCTACAGACGACACCATCCGTCGGTGGCCCTGCCGACT
GGTCCGTGGCAATCGGGCGACTCTCTGCCCGTTCAAATCGAACAGTCGGA
TCTGTCGATTGTCATGCGGTATGGCGATAATTCCACCAGTGGAGACCGCC
AAACGATTGACCGAGGAATCCGTTCGAATGGTGGCCAAGGCGGATCGCAT
GTTGCGCAGCTCCCAGACCTTGATTGTACGATCATCTGATCCGGACACCA
CCTTGTCGTCGCGTGCGAACACACTGGACGTAACCGTTTCCGTGTGCCCT
TGGAAGACGGAGACCGCTGGGATTGCCTCTCGGAAGTCCCATAGACGGAA
CGTAGTGTCCCTGGAAGCGGTGACCACCAGGCGCTGGGTGGGATGTGCCG
ACACGTGGGTGAGCTCGTGGTCGTGCCCAGTGAGCGGCTGCAGTGGCAGG
CCAGTCTCCACGTCCCACAGGATGGCAGTCCGATCCCAGCTGCCCGTGAT
GATTTGATCCATCGAAGAGAGCCAATCGGCGGCCACCACGACTGAAAGAT
GACCGCCGGGGCCTGTGAACTCGCAGAGCGGAGTGCGTAAGGTGTCCACA
CGATCGCGATCTTCCACCTGCTCATCACTGTCGTCCAGTTCCTCCTCTGA
AGAATGGCCCTTCTTGGGCACTTCCCAGTTGACGGCCGCCTGCCAGATGT
GGGCAGTACCATCCCCGCTGCCGGTGAGCACAAGATCTCGCTGCTGATGG
AACTTGATGGAGTTTACG

BO08117.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12333-PA 1464 CG12333-RA 612..1461 868..19 4250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12333-RA 2167 CG12333-RA 861..1710 868..19 4250 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18400830..18401574 19..763 3725 100 Plus
3R 32079331 3R 18401631..18401736 763..868 530 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:10:30 has no hits.

BO08117.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:23 Download gff for BO08117.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12333-PA 612..1464 16..868 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:51 Download gff for BO08117.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12333-PA 612..1464 16..868 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:32 Download gff for BO08117.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12333-RA 861..1715 14..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:56 Download gff for BO08117.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12333-RA 861..1715 14..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:56 Download gff for BO08117.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18400825..18401574 14..763 99 <- Plus
3R 18401632..18401736 764..868 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:32 Download gff for BO08117.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14226547..14227296 14..763 99 <- Plus
arm_3R 14227354..14227458 764..868 100   Plus

BO08117.5prime Sequence

966 bp (855 high quality bases) assembled on 2006-01-06

> BO08117.5prime
GAAGTTATCAGTCGACATGAAGGCTAGCAAGACACGGGCTGTGCGCCTCA
CCAGTTTGACGGAGGACGTGGCCGCCGTACCGGAAGATGCACCATTCCGT
GCACGCCTGCACGTCCTCTTCGCCCAGATCGAGCGGGAGTTCGAGCAGCT
GTATCTGGAGAACCAGGCCCTGCAGGAGAAGCTAGACATAGCCACCACCA
CCAAGGAGTCATTGATTCCACCCGATGCCAGATCCGCAGCAGGAGGTTCA
ATGAGCACTCAGGCCTCATCCGCAGCTTTGGCCACGCCTGCAACCCAGAC
GGATGAGGTGGCGGGCAGCTTCCTGGCTGCAGCATCCAGTACACACAAGA
GCTTGAAGGCCAAACTAAGCAGCGCTACCGGCGGCAGCAAAGCCAAGGCC
AGCAACAAGATCAAGGCCCAAACCAGCCGCATTGTGTCCAGCTTTAAGGC
GCCCACAGTGGTCAGCACGGTGGTCCGAGAATTCGGCGGCCACAAGGATG
GCATCTGGCAGGTTGCCGCCAAGGCGGGACAACCCATCATTGGCACCGCC
TCCGCCGATCATACGGCCTGCATCTGGGGCGTGGAGAGCGCCAGGTGCCT
TTTGCAGTACCAAGGGCACGCCGGCTCCGTAAACTCCATCAAGTTCCATC
AGCAGCGAGATCTTGTGCTCACCGGCAGCGGGGATGGTACTGCCCACATC
TGGCAGGCGGCCGTCAACTGGGAAGTGCCCAAGAAGGGCCATTCTTCAGA
GGAGGAACTGGACGACAGTGATGAGCAGGTGGAAGATCGCGATCGTGTGG
ACACCTTACGCACTCCGCTCTGCGAGTTCACAGGCCCCGGCGGTCATCTT
TCAGTCGTGGTGGCCGCCGATTGGCTCTCTTCGATGGATCAAATCATCAC
GGGCAGCTGGGATCGGACTGCCATCCTGTGGGACGTGNAGACTGGCCTGC
CACTGCAGCCGCTCAC

BO08117.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12333-PA 1464 CG12333-RA 1..950 17..966 4731 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12333-RA 2167 CG12333-RA 249..1199 16..966 4744 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18401631..18402193 733..171 2815 100 Minus
3R 32079331 3R 18401341..18401574 966..733 1159 99.6 Minus
3R 32079331 3R 18402314..18402468 170..16 775 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:06:49 has no hits.

BO08117.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:24 Download gff for BO08117.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12333-PA 1..950 17..966 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:53 Download gff for BO08117.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12333-PA 1..950 17..966 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:47:29 Download gff for BO08117.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12333-RA 249..1199 16..966 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:41:54 Download gff for BO08117.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12333-RA 249..1199 16..966 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:41:54 Download gff for BO08117.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18401341..18401574 733..966 99 <- Minus
3R 18401632..18402193 171..732 100 <- Minus
3R 18402314..18402468 16..170 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:47:29 Download gff for BO08117.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14228036..14228190 16..170 100   Minus
arm_3R 14227063..14227296 733..966 99 <- Minus
arm_3R 14227354..14227915 171..732 100 <- Minus

BO08117.complete Sequence

1495 bp (1495 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631060

> BO08117.complete
GAAGTTATCAGTCGACATGAAGGCTAGCAAGACACGGGCTGTGCGCCTCA
CCAGTTTGACGGAGGACGTGGCCGCCGTACCGGAAGATGCACCATTCCGT
GCACGCCTGCACGTCCTCTTCGCCCAGATCGAGCGGGAGTTCGAGCAGCT
GTATCTGGAGAACCAGGCCCTGCAGGAGAAGCTAGACATAGCCACCACCA
CCAAGGAGTCATTGATTCCACCCGATGCCAGATCCGCAGCAGGAGGTTCA
ATGAGCACTCAGGCCTCATCCGCAGCTTTGGCCACGCCTGCAACCCAGAC
GGATGAGGTGGCGGGCAGCTTCCTGGCTGCAGCATCCAGTACACACAAGA
GCTTGAAGGCCAAACTAAGCAGCGCTACCGGCGGCAGCAAAGCCAAGGCC
AGCAACAAGATCAAGGCCCAAACCAGCCGCATTGTGTCCAGCTTTAAGGC
GCCCACAGTGGTCAGCACGGTGGTCCGAGAATTCGGCGGCCACAAGGATG
GCATCTGGCAGGTTGCCGCCAAGGCGGGACAACCCATCATTGGCACCGCC
TCCGCCGATCATACGGCCTGCATCTGGGGCGTGGAGAGCGCCAGGTGCCT
TTTGCAGTACCAAGGGCACGCCGGCTCCGTAAACTCCATCAAGTTCCATC
AGCAGCGAGATCTTGTGCTCACCGGCAGCGGGGATGGTACTGCCCACATC
TGGCAGGCGGCCGTCAACTGGGAAGTGCCCAAGAAGGGCCATTCTTCAGA
GGAGGAACTGGACGACAGTGATGAGCAGGTGGAAGATCGCGATCGTGTGG
ACACCTTACGCACTCCGCTCTGCGAGTTCACAGGCCCCGGCGGTCATCTT
TCAGTCGTGGTGGCCGCCGATTGGCTCTCTTCGATGGATCAAATCATCAC
GGGCAGCTGGGATCGGACTGCCATCCTGTGGGACGTGGAGACTGGCCTGC
CACTGCAGCCGCTCACTGGGCACGACCACGAGCTCACCCACGTGTCGGCA
CATCCCACCCAGCGCCTGGTGGTCACCGCTTCCAGGGACACTACGTTCCG
TCTATGGGACTTCCGAGAGGCAATCCCAGCGGTCTCCGTCTTCCAAGGGC
ACACGGAAACGGTTACGTCCAGTGTGTTCGCACGCGACGACAAGGTGGTG
TCCGGATCAGATGATCGTACAATCAAGGTCTGGGAGCTGCGCAACATGCG
ATCCGCCTTGGCCACCATTCGAACGGATTCCTCGGTCAATCGTTTGGCGG
TCTCCACTGGTGGAATTATCGCCATACCGCATGACAATCGACAGATCCGA
CTGTTCGATTTGAACGGGCAGAGAGTCGCCCGATTGCCACGGACCAGTCG
GCAGGGCCACCGACGGATGGTGTCGTCTGTAGCGTGGGCGGAGGAGCCGC
TGCTGGACTGCGATCTCTTCTCCTGCGGCTTCGATCGCCGCGTTTTCGGC
TGGTCCATCGTTCTTCCGAAGGACAATGCAAGCTTTCTAGACCAT

BO08117.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12333-RA 1464 CG12333-PA 1..1461 17..1477 7305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12333-RA 2167 CG12333-RA 249..1710 16..1477 7310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18400830..18401574 1477..733 3725 100 Minus
3R 32079331 3R 18401631..18402193 733..171 2815 100 Minus
3R 32079331 3R 18402314..18402468 170..16 775 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:00:48 has no hits.

BO08117.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:05 Download gff for BO08117.complete
Subject Subject Range Query Range Percent Splice Strand
CG12333-RA 1..1464 17..1480 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:12 Download gff for BO08117.complete
Subject Subject Range Query Range Percent Splice Strand
CG12333-RA 246..1712 16..1482 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:18 Download gff for BO08117.complete
Subject Subject Range Query Range Percent Splice Strand
CG12333-RA 250..1710 17..1479 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:05 Download gff for BO08117.complete
Subject Subject Range Query Range Percent Splice Strand
CG12333-RA 246..1712 16..1482 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:23 Download gff for BO08117.complete
Subject Subject Range Query Range Percent Splice Strand
CG12333-RA 250..1710 17..1479 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:23 Download gff for BO08117.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18400827..18401574 733..1479 99 <- Minus
3R 18401632..18402193 171..732 100 <- Minus
3R 18402314..18402467 17..170 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:18 Download gff for BO08117.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14226549..14227296 733..1479 99 <- Minus
arm_3R 14227354..14227915 171..732 100 <- Minus
arm_3R 14228036..14228189 17..170 100   Minus

BO08117.pep Sequence

Translation from 16 to 1495

> BO08117.pep
MKASKTRAVRLTSLTEDVAAVPEDAPFRARLHVLFAQIEREFEQLYLENQ
ALQEKLDIATTTKESLIPPDARSAAGGSMSTQASSAALATPATQTDEVAG
SFLAAASSTHKSLKAKLSSATGGSKAKASNKIKAQTSRIVSSFKAPTVVS
TVVREFGGHKDGIWQVAAKAGQPIIGTASADHTACIWGVESARCLLQYQG
HAGSVNSIKFHQQRDLVLTGSGDGTAHIWQAAVNWEVPKKGHSSEEELDD
SDEQVEDRDRVDTLRTPLCEFTGPGGHLSVVVAADWLSSMDQIITGSWDR
TAILWDVETGLPLQPLTGHDHELTHVSAHPTQRLVVTASRDTTFRLWDFR
EAIPAVSVFQGHTETVTSSVFARDDKVVSGSDDRTIKVWELRNMRSALAT
IRTDSSVNRLAVSTGGIIAIPHDNRQIRLFDLNGQRVARLPRTSRQGHRR
MVSSVAWAEEPLLDCDLFSCGFDRRVFGWSIVLPKDNASFLDH

BO08117.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12333-PA 487 CG12333-PA 1..487 1..487 2497 100 Plus
Lis-1-PG 411 CG8440-PG 144..411 154..392 254 29.4 Plus
Lis-1-PF 411 CG8440-PF 144..411 154..392 254 29.4 Plus
Lis-1-PB 411 CG8440-PB 144..411 154..392 254 29.4 Plus
Lis-1-PA 411 CG8440-PA 144..411 154..392 254 29.4 Plus
Lis-1-PG 411 CG8440-PG 106..372 158..436 200 23.3 Plus
Lis-1-PF 411 CG8440-PF 106..372 158..436 200 23.3 Plus
Lis-1-PB 411 CG8440-PB 106..372 158..436 200 23.3 Plus
Lis-1-PG 411 CG8440-PG 12..303 190..475 197 24.5 Plus
Lis-1-PF 411 CG8440-PF 12..303 190..475 197 24.5 Plus
Lis-1-PB 411 CG8440-PB 12..303 190..475 197 24.5 Plus