Clone Sequence Records
BO08117.3prime Sequence
868 bp (867 high quality bases) assembled on 2006-01-06
> BO08117.3prime
ATGGTCTAGAAAGCTTGCATTGTCCTTCGGAAGAACGATGGACCAGCCGA
AAACGCGGCGATCGAAGCCGCAGGAGAAGAGATCGCAGTCCAGCAGCGGC
TCCTCCGCCCACGCTACAGACGACACCATCCGTCGGTGGCCCTGCCGACT
GGTCCGTGGCAATCGGGCGACTCTCTGCCCGTTCAAATCGAACAGTCGGA
TCTGTCGATTGTCATGCGGTATGGCGATAATTCCACCAGTGGAGACCGCC
AAACGATTGACCGAGGAATCCGTTCGAATGGTGGCCAAGGCGGATCGCAT
GTTGCGCAGCTCCCAGACCTTGATTGTACGATCATCTGATCCGGACACCA
CCTTGTCGTCGCGTGCGAACACACTGGACGTAACCGTTTCCGTGTGCCCT
TGGAAGACGGAGACCGCTGGGATTGCCTCTCGGAAGTCCCATAGACGGAA
CGTAGTGTCCCTGGAAGCGGTGACCACCAGGCGCTGGGTGGGATGTGCCG
ACACGTGGGTGAGCTCGTGGTCGTGCCCAGTGAGCGGCTGCAGTGGCAGG
CCAGTCTCCACGTCCCACAGGATGGCAGTCCGATCCCAGCTGCCCGTGAT
GATTTGATCCATCGAAGAGAGCCAATCGGCGGCCACCACGACTGAAAGAT
GACCGCCGGGGCCTGTGAACTCGCAGAGCGGAGTGCGTAAGGTGTCCACA
CGATCGCGATCTTCCACCTGCTCATCACTGTCGTCCAGTTCCTCCTCTGA
AGAATGGCCCTTCTTGGGCACTTCCCAGTTGACGGCCGCCTGCCAGATGT
GGGCAGTACCATCCCCGCTGCCGGTGAGCACAAGATCTCGCTGCTGATGG
AACTTGATGGAGTTTACG
BO08117.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12333-PA | 1464 | CG12333-RA | 612..1461 | 868..19 | 4250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12333-RA | 2167 | CG12333-RA | 861..1710 | 868..19 | 4250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18400830..18401574 | 19..763 | 3725 | 100 | Plus |
3R | 32079331 | 3R | 18401631..18401736 | 763..868 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:10:30 has no hits.
BO08117.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:23 Download gff for
BO08117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-PA | 612..1464 | 16..868 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:51 Download gff for
BO08117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-PA | 612..1464 | 16..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:32 Download gff for
BO08117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-RA | 861..1715 | 14..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:48:56 Download gff for
BO08117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-RA | 861..1715 | 14..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:48:56 Download gff for
BO08117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18400825..18401574 | 14..763 | 99 | <- | Plus |
3R | 18401632..18401736 | 764..868 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:32 Download gff for
BO08117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14226547..14227296 | 14..763 | 99 | <- | Plus |
arm_3R | 14227354..14227458 | 764..868 | 100 | | Plus |
BO08117.5prime Sequence
966 bp (855 high quality bases) assembled on 2006-01-06
> BO08117.5prime
GAAGTTATCAGTCGACATGAAGGCTAGCAAGACACGGGCTGTGCGCCTCA
CCAGTTTGACGGAGGACGTGGCCGCCGTACCGGAAGATGCACCATTCCGT
GCACGCCTGCACGTCCTCTTCGCCCAGATCGAGCGGGAGTTCGAGCAGCT
GTATCTGGAGAACCAGGCCCTGCAGGAGAAGCTAGACATAGCCACCACCA
CCAAGGAGTCATTGATTCCACCCGATGCCAGATCCGCAGCAGGAGGTTCA
ATGAGCACTCAGGCCTCATCCGCAGCTTTGGCCACGCCTGCAACCCAGAC
GGATGAGGTGGCGGGCAGCTTCCTGGCTGCAGCATCCAGTACACACAAGA
GCTTGAAGGCCAAACTAAGCAGCGCTACCGGCGGCAGCAAAGCCAAGGCC
AGCAACAAGATCAAGGCCCAAACCAGCCGCATTGTGTCCAGCTTTAAGGC
GCCCACAGTGGTCAGCACGGTGGTCCGAGAATTCGGCGGCCACAAGGATG
GCATCTGGCAGGTTGCCGCCAAGGCGGGACAACCCATCATTGGCACCGCC
TCCGCCGATCATACGGCCTGCATCTGGGGCGTGGAGAGCGCCAGGTGCCT
TTTGCAGTACCAAGGGCACGCCGGCTCCGTAAACTCCATCAAGTTCCATC
AGCAGCGAGATCTTGTGCTCACCGGCAGCGGGGATGGTACTGCCCACATC
TGGCAGGCGGCCGTCAACTGGGAAGTGCCCAAGAAGGGCCATTCTTCAGA
GGAGGAACTGGACGACAGTGATGAGCAGGTGGAAGATCGCGATCGTGTGG
ACACCTTACGCACTCCGCTCTGCGAGTTCACAGGCCCCGGCGGTCATCTT
TCAGTCGTGGTGGCCGCCGATTGGCTCTCTTCGATGGATCAAATCATCAC
GGGCAGCTGGGATCGGACTGCCATCCTGTGGGACGTGNAGACTGGCCTGC
CACTGCAGCCGCTCAC
BO08117.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12333-PA | 1464 | CG12333-RA | 1..950 | 17..966 | 4731 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:06:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12333-RA | 2167 | CG12333-RA | 249..1199 | 16..966 | 4744 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:06:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18401631..18402193 | 733..171 | 2815 | 100 | Minus |
3R | 32079331 | 3R | 18401341..18401574 | 966..733 | 1159 | 99.6 | Minus |
3R | 32079331 | 3R | 18402314..18402468 | 170..16 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:06:49 has no hits.
BO08117.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:24 Download gff for
BO08117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-PA | 1..950 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:53 Download gff for
BO08117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-PA | 1..950 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:47:29 Download gff for
BO08117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-RA | 249..1199 | 16..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:41:54 Download gff for
BO08117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-RA | 249..1199 | 16..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:41:54 Download gff for
BO08117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18401341..18401574 | 733..966 | 99 | <- | Minus |
3R | 18401632..18402193 | 171..732 | 100 | <- | Minus |
3R | 18402314..18402468 | 16..170 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:47:29 Download gff for
BO08117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14228036..14228190 | 16..170 | 100 | | Minus |
arm_3R | 14227063..14227296 | 733..966 | 99 | <- | Minus |
arm_3R | 14227354..14227915 | 171..732 | 100 | <- | Minus |
BO08117.complete Sequence
1495 bp (1495 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631060
> BO08117.complete
GAAGTTATCAGTCGACATGAAGGCTAGCAAGACACGGGCTGTGCGCCTCA
CCAGTTTGACGGAGGACGTGGCCGCCGTACCGGAAGATGCACCATTCCGT
GCACGCCTGCACGTCCTCTTCGCCCAGATCGAGCGGGAGTTCGAGCAGCT
GTATCTGGAGAACCAGGCCCTGCAGGAGAAGCTAGACATAGCCACCACCA
CCAAGGAGTCATTGATTCCACCCGATGCCAGATCCGCAGCAGGAGGTTCA
ATGAGCACTCAGGCCTCATCCGCAGCTTTGGCCACGCCTGCAACCCAGAC
GGATGAGGTGGCGGGCAGCTTCCTGGCTGCAGCATCCAGTACACACAAGA
GCTTGAAGGCCAAACTAAGCAGCGCTACCGGCGGCAGCAAAGCCAAGGCC
AGCAACAAGATCAAGGCCCAAACCAGCCGCATTGTGTCCAGCTTTAAGGC
GCCCACAGTGGTCAGCACGGTGGTCCGAGAATTCGGCGGCCACAAGGATG
GCATCTGGCAGGTTGCCGCCAAGGCGGGACAACCCATCATTGGCACCGCC
TCCGCCGATCATACGGCCTGCATCTGGGGCGTGGAGAGCGCCAGGTGCCT
TTTGCAGTACCAAGGGCACGCCGGCTCCGTAAACTCCATCAAGTTCCATC
AGCAGCGAGATCTTGTGCTCACCGGCAGCGGGGATGGTACTGCCCACATC
TGGCAGGCGGCCGTCAACTGGGAAGTGCCCAAGAAGGGCCATTCTTCAGA
GGAGGAACTGGACGACAGTGATGAGCAGGTGGAAGATCGCGATCGTGTGG
ACACCTTACGCACTCCGCTCTGCGAGTTCACAGGCCCCGGCGGTCATCTT
TCAGTCGTGGTGGCCGCCGATTGGCTCTCTTCGATGGATCAAATCATCAC
GGGCAGCTGGGATCGGACTGCCATCCTGTGGGACGTGGAGACTGGCCTGC
CACTGCAGCCGCTCACTGGGCACGACCACGAGCTCACCCACGTGTCGGCA
CATCCCACCCAGCGCCTGGTGGTCACCGCTTCCAGGGACACTACGTTCCG
TCTATGGGACTTCCGAGAGGCAATCCCAGCGGTCTCCGTCTTCCAAGGGC
ACACGGAAACGGTTACGTCCAGTGTGTTCGCACGCGACGACAAGGTGGTG
TCCGGATCAGATGATCGTACAATCAAGGTCTGGGAGCTGCGCAACATGCG
ATCCGCCTTGGCCACCATTCGAACGGATTCCTCGGTCAATCGTTTGGCGG
TCTCCACTGGTGGAATTATCGCCATACCGCATGACAATCGACAGATCCGA
CTGTTCGATTTGAACGGGCAGAGAGTCGCCCGATTGCCACGGACCAGTCG
GCAGGGCCACCGACGGATGGTGTCGTCTGTAGCGTGGGCGGAGGAGCCGC
TGCTGGACTGCGATCTCTTCTCCTGCGGCTTCGATCGCCGCGTTTTCGGC
TGGTCCATCGTTCTTCCGAAGGACAATGCAAGCTTTCTAGACCAT
BO08117.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12333-RA | 1464 | CG12333-PA | 1..1461 | 17..1477 | 7305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12333-RA | 2167 | CG12333-RA | 249..1710 | 16..1477 | 7310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18400830..18401574 | 1477..733 | 3725 | 100 | Minus |
3R | 32079331 | 3R | 18401631..18402193 | 733..171 | 2815 | 100 | Minus |
3R | 32079331 | 3R | 18402314..18402468 | 170..16 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:00:48 has no hits.
BO08117.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:05 Download gff for
BO08117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-RA | 1..1464 | 17..1480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:12 Download gff for
BO08117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-RA | 246..1712 | 16..1482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:18 Download gff for
BO08117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-RA | 250..1710 | 17..1479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:05 Download gff for
BO08117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-RA | 246..1712 | 16..1482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:23 Download gff for
BO08117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12333-RA | 250..1710 | 17..1479 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:23 Download gff for
BO08117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18400827..18401574 | 733..1479 | 99 | <- | Minus |
3R | 18401632..18402193 | 171..732 | 100 | <- | Minus |
3R | 18402314..18402467 | 17..170 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:18 Download gff for
BO08117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14226549..14227296 | 733..1479 | 99 | <- | Minus |
arm_3R | 14227354..14227915 | 171..732 | 100 | <- | Minus |
arm_3R | 14228036..14228189 | 17..170 | 100 | | Minus |
BO08117.pep Sequence
Translation from 16 to 1495
> BO08117.pep
MKASKTRAVRLTSLTEDVAAVPEDAPFRARLHVLFAQIEREFEQLYLENQ
ALQEKLDIATTTKESLIPPDARSAAGGSMSTQASSAALATPATQTDEVAG
SFLAAASSTHKSLKAKLSSATGGSKAKASNKIKAQTSRIVSSFKAPTVVS
TVVREFGGHKDGIWQVAAKAGQPIIGTASADHTACIWGVESARCLLQYQG
HAGSVNSIKFHQQRDLVLTGSGDGTAHIWQAAVNWEVPKKGHSSEEELDD
SDEQVEDRDRVDTLRTPLCEFTGPGGHLSVVVAADWLSSMDQIITGSWDR
TAILWDVETGLPLQPLTGHDHELTHVSAHPTQRLVVTASRDTTFRLWDFR
EAIPAVSVFQGHTETVTSSVFARDDKVVSGSDDRTIKVWELRNMRSALAT
IRTDSSVNRLAVSTGGIIAIPHDNRQIRLFDLNGQRVARLPRTSRQGHRR
MVSSVAWAEEPLLDCDLFSCGFDRRVFGWSIVLPKDNASFLDH
BO08117.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12333-PA | 487 | CG12333-PA | 1..487 | 1..487 | 2497 | 100 | Plus |
Lis-1-PG | 411 | CG8440-PG | 144..411 | 154..392 | 254 | 29.4 | Plus |
Lis-1-PF | 411 | CG8440-PF | 144..411 | 154..392 | 254 | 29.4 | Plus |
Lis-1-PB | 411 | CG8440-PB | 144..411 | 154..392 | 254 | 29.4 | Plus |
Lis-1-PA | 411 | CG8440-PA | 144..411 | 154..392 | 254 | 29.4 | Plus |
Lis-1-PG | 411 | CG8440-PG | 106..372 | 158..436 | 200 | 23.3 | Plus |
Lis-1-PF | 411 | CG8440-PF | 106..372 | 158..436 | 200 | 23.3 | Plus |
Lis-1-PB | 411 | CG8440-PB | 106..372 | 158..436 | 200 | 23.3 | Plus |
Lis-1-PG | 411 | CG8440-PG | 12..303 | 190..475 | 197 | 24.5 | Plus |
Lis-1-PF | 411 | CG8440-PF | 12..303 | 190..475 | 197 | 24.5 | Plus |
Lis-1-PB | 411 | CG8440-PB | 12..303 | 190..475 | 197 | 24.5 | Plus |