Clone Sequence Records
BO08118.3prime Sequence
969 bp (879 high quality bases) assembled on 2006-01-06
> BO08118.3prime
ATGGTCTAGAAAGCTTGCCCAGCTGAGCTCCTCCGGCAATCCGCCAGGAT
ACTCGCCCGTTAGGCAAGCGGTGCAGTAGCCAGCTTTGAGTGGATTCACA
TGGGCCTTGTTCATCTGGACGGCCTTGACCAGACCCTCCACACTCAAATA
GGCCAGACTATCCGCACCCACGTGATCCGCCAGCTGATCCGCATTCAATT
TGTTGGCTATTAGCTCCTCACGAGTGGGTATATTGATACCCATGTAGCAG
GGATATTGCAGCGGAGGACTGGCAATGCGAATGTGCACCTCGGTGGCGCC
GGCATCTCGCAGGAGTTTGATAATCGGTCCAATGGTATTTCCCCTCACTA
TGGAGTCATCGACTAGCACGATCCGCTTGCCCTCGACATTTTGAGCCAGG
GCACCAAACTTTTTGGCCACGCCCAACTGTCGCAATCTCGTCGAGGGTTG
GATGAACGTGCGGCCCACATAGCGATTCTTGCAGAGAACTTCCCCGAATG
GCAGTCCCGACTCCCTGGCATAACCATGGGCAGCTGCTGTGCCCGATTCC
GGAACCGAGCTGACCAAATCCGCATCTAATGGCGATTCCCTGGCCAACTG
GCGACCACATTGCAGGCGGGCTGAGTAAACCATCTGACCCTCGAACATGG
AATCACTGCGGGCAAAGTAGACGTACTCAAAGATGCAGAATGCCATGCGC
TTATAGTCCGGTCTTTCAACGATATCCACGGTTCTATAACCATTTCGTGA
CAGCTCGATGATCTCACCGGGCTCCACCTCGCGAACATATCTGGCTCCGA
TGGAGAGGAATCCGCAGCTTTCACTACTGACCACCCAACCCTCGGCCAGT
TGGTCATTGATATTCGCATGTCCTGCATCAACGGGCACGATTTTTCCCAA
GCACAGCGGTCTATTGCCATAGGAATCGCGGACAGCGTAGATCTTATCCT
TGTGCATCACGACCAGGGA
BO08118.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10078-PB | 1644 | Prat2-RB | 691..1641 | 969..19 | 4755 | 100 | Minus |
| CG10078-PA | 1413 | Prat2-RA | 460..1410 | 969..19 | 4755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat2-RA | 1737 | CG10078-RA | 683..1633 | 969..19 | 4755 | 100 | Minus |
| Prat2-RB | 1932 | CG10078-RB | 878..1828 | 969..19 | 4755 | 100 | Minus |
| Prat-RB | 2105 | CG2867-RB | 775..1625 | 966..116 | 1015 | 75.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6912103..6913053 | 19..969 | 4755 | 100 | Plus |
| 3R | 32079331 | 3R | 7910078..7910928 | 116..966 | 1015 | 74.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:10:37 has no hits.
BO08118.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:25 Download gff for
BO08118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-PB | 692..1644 | 18..968 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:55 Download gff for
BO08118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10078-PA | 461..1413 | 18..968 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:34 Download gff for
BO08118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-RB | 879..1828 | 19..968 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:49:15 Download gff for
BO08118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-RB | 879..1828 | 19..968 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:49:15 Download gff for
BO08118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6912103..6913052 | 19..968 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:34 Download gff for
BO08118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6905203..6906152 | 19..968 | 100 | | Plus |
BO08118.5prime Sequence
876 bp (873 high quality bases) assembled on 2006-01-06
> BO08118.5prime
GAAGTTATCAGTCGACATGATGGCGCAAAGTGATTCTGGAAATTGCTGTG
CCAAGCTTAATAAAGATGAGTGCTGCCAGAAGACAAAGGATGTGATCTTG
AGCGGCGTATCTCCCAAAATGTTTCCCGACAAAATCTACAAGTCTGTTCA
ACCCAAAGGAGAGGATGCCACCGGAATGACCTGCGAATGCGGTGTTTTTG
CAGCCATCGCTTGCGGGGATTACCCAACACAACTGGACATAGCACAGATG
ATCTGCCTCGGTCTGGTGGCTCTGCAGCATCGTGGCCAGGAGTCGGCGGG
AATAGTGACCAGTTTGGGCAAGTCCTCCAAGAATTTCAGCGTACACAAGG
GCATGGGCATGATCAACAATCTGTTCAATGACGAGGCGATCAGGAAGTTA
AAGGGTAACCTGGGAATAGGACACACCCGGTATTCCACGGCCGCAGCCTC
GGAAGTTGTGAACTGCCAGCCGTTTGTGGTGCACACTGCCCATGGAGCAC
TGGCCATTGCCCACAATGGTGAGCTAGTGAACTGCGAGTCCCTGAGGAGG
GAGGTCCTGGAGCGAGGAGTGGGCCTGTCTACGCACAGTGACAGTGAACT
TATTGCCCAATCCCTGTGCTGTGCACCAGAGGATGTGTCGGAGCACGATG
GACCCAATTGGCCGGCCAGAATTCGCCATTTCATGACCCTGGCTCCACTC
TCCTACTCCCTGGTCGTGATGCACAAGGATAAGATCTACGCTGTCCGCGA
TTCCTATGGCAATAGACCGCTGTGCTTGGGAAAAATCGTGCCCGTTGATG
CANGACATGCGAATATCAATGACCAACTGGCCGAGGGTTGGGTGGTCAGT
AGTGAAAGCTGCGGATTCCTCTCCAT
BO08118.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10078-PB | 1644 | Prat2-RB | 1..860 | 17..876 | 4281 | 99.8 | Plus |
| CG10078-PA | 1413 | Prat2-RA | 1..629 | 248..876 | 3126 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:40:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat2-RB | 1932 | CG10078-RB | 188..1047 | 17..876 | 4289 | 99.9 | Plus |
| Prat2-RA | 1737 | CG10078-RA | 209..852 | 233..876 | 3209 | 99.8 | Plus |
| Prat-RB | 2105 | CG2867-RB | 249..935 | 184..870 | 949 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:40:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6912884..6913527 | 876..233 | 3209 | 99.8 | Minus |
| 3R | 32079331 | 3R | 7910768..7911454 | 870..184 | 949 | 75.8 | Minus |
| 3L | 28110227 | 3L | 6914414..6914582 | 232..64 | 845 | 100 | Minus |
| 3L | 28110227 | 3L | 6914641..6914689 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:40:53 has no hits.
BO08118.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:26 Download gff for
BO08118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-PB | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:56 Download gff for
BO08118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10078-PB | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:06:24 Download gff for
BO08118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-RB | 183..1047 | 10..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:57:18 Download gff for
BO08118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-RB | 183..1047 | 10..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:57:18 Download gff for
BO08118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6912884..6913527 | 233..876 | 99 | <- | Minus |
| 3L | 6914414..6914580 | 66..232 | 100 | <- | Minus |
| 3L | 6914641..6914694 | 10..65 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:06:24 Download gff for
BO08118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6905984..6906627 | 233..876 | 99 | <- | Minus |
| arm_3L | 6907514..6907680 | 66..232 | 100 | <- | Minus |
| arm_3L | 6907741..6907794 | 10..65 | 94 | | Minus |
BO08118.complete Sequence
1675 bp (1675 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631061
> BO08118.complete
GAAGTTATCAGTCGACATGATGGCGCAAAGTGATTCTGGAAATTGCTGTG
CCAAGCTTAATAAAGATGAGTGCTGCCAGAAGACAAAGGATGTGATCTTG
AGCGGCGTATCTCCCAAAATGTTTCCCGACAAAATCTACAAGTCTGTTCA
ACCCAAAGGAGAGGATGCCACCGGAATGACCTGCGAATGCGGTGTTTTTG
CAGCCATCGCTTGCGGGGATTACCCAACACAACTGGACATAGCACAGATG
ATCTGCCTCGGTCTGGTGGCTCTGCAGCATCGTGGCCAGGAGTCGGCGGG
AATAGTGACCAGTTTGGGCAAGTCCTCCAAGAATTTCAGCGTACACAAGG
GCATGGGCATGATCAACAATCTGTTCAATGACGAGGCGATCAGGAAGTTA
AAGGGTAACCTGGGAATAGGACACACCCGGTATTCCACGGCCGCAGCCTC
GGAAGTTGTGAACTGCCAGCCGTTTGTGGTGCACACTGCCCATGGAGCAC
TGGCCATTGCCCACAATGGTGAGCTAGTGAACTGCGAGTCCCTGAGGAGG
GAGGTCCTGGAGCGAGGAGTGGGCCTGTCTACGCACAGTGACAGTGAACT
TATTGCCCAATCCCTGTGCTGTGCACCAGAGGATGTGTCGGAGCACGATG
GACCCAATTGGCCGGCCAGAATTCGCCATTTCATGACCCTGGCTCCACTC
TCCTACTCCCTGGTCGTGATGCACAAGGATAAGATCTACGCTGTCCGCGA
TTCCTATGGCAATAGACCGCTGTGCTTGGGAAAAATCGTGCCCGTTGATG
CAGGACATGCGAATATCAATGACCAACTGGCCGAGGGTTGGGTGGTCAGT
AGTGAAAGCTGCGGATTCCTCTCCATCGGAGCCAGATATGTTCGCGAGGT
GGAGCCCGGTGAGATCATCGAGCTGTCACGAAATGGTTATAGAACCGTGG
ATATCGTTGAAAGACCGGACTATAAGCGCATGGCATTCTGCATCTTTGAG
TACGTCTACTTTGCCCGCAGTGATTCCATGTTCGAGGGTCAGATGGTTTA
CTCAGCCCGCCTGCAATGTGGTCGCCAGTTGGCCAGGGAATCGCCATTAG
ATGCGGATTTGGTCAGCTCGGTTCCGGAATCGGGCACAGCAGCTGCCCAT
GGTTATGCCAGGGAGTCGGGACTGCCATTCGGGGAAGTTCTCTGCAAGAA
TCGCTATGTGGGCCGCACGTTCATCCAACCCTCGACGAGATTGCGACAGT
TGGGCGTGGCCAAAAAGTTTGGTGCCCTGGCTCAAAATGTCGAGGGCAAG
CGGATCGTGCTAGTCGATGACTCCATAGTGAGGGGAAATACCATTGGACC
GATTATCAAACTCCTGCGAGATGCCGGCGCCACCGAGGTGCACATTCGCA
TTGCCAGTCCTCCGCTGCAATATCCCTGCTACATGGGTATCAATATACCC
ACTCGTGAGGAGCTAATAGCCAACAAATTGAATGCGGATCAGCTGGCGGA
TCACGTGGGTGCGGATAGTCTGGCCTATTTGAGTGTGGAGGGTCTGGTCA
AGGCCGTCCAGATGAACAAGGCCCATGTGAATCCACTCAAAGCTGGCTAC
TGCACCGCTTGCCTAACGGGCGAGTATCCTGGCGGATTGCCGGAGGAGCT
CAGCTGGGCAAGCTTTCTAGACCAT
BO08118.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:23:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat2-RB | 1644 | CG10078-PB | 1..1641 | 17..1657 | 8205 | 100 | Plus |
| Prat2-RA | 1413 | CG10078-PA | 1..1410 | 248..1657 | 7050 | 100 | Plus |
| Prat-RB | 1641 | CG2867-PB | 156..1532 | 184..1560 | 1830 | 75.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat2-RB | 1932 | CG10078-RB | 188..1828 | 17..1657 | 8205 | 100 | Plus |
| Prat2-RA | 1737 | CG10078-RA | 209..1633 | 233..1657 | 7125 | 100 | Plus |
| Prat-RB | 2105 | CG2867-RB | 249..1625 | 184..1560 | 1830 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6912103..6913527 | 1657..233 | 7125 | 100 | Minus |
| 3R | 32079331 | 3R | 7910078..7911454 | 1560..184 | 1830 | 75.5 | Minus |
| 3L | 28110227 | 3L | 6914414..6914582 | 232..64 | 845 | 100 | Minus |
| 3L | 28110227 | 3L | 6914641..6914689 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:23:01 has no hits.
BO08118.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:06 Download gff for
BO08118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-RB | 1..1644 | 17..1658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:14 Download gff for
BO08118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-RB | 165..1810 | 10..1657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:09 Download gff for
BO08118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-RB | 188..1828 | 17..1659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:06 Download gff for
BO08118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-RB | 165..1810 | 10..1657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:38 Download gff for
BO08118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-RB | 188..1828 | 17..1659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:38 Download gff for
BO08118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6912101..6913527 | 233..1659 | 99 | <- | Minus |
| 3L | 6914414..6914580 | 66..232 | 100 | <- | Minus |
| 3L | 6914641..6914689 | 17..65 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:09 Download gff for
BO08118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6905201..6906627 | 233..1659 | 99 | <- | Minus |
| arm_3L | 6907514..6907680 | 66..232 | 100 | <- | Minus |
| arm_3L | 6907741..6907789 | 17..65 | 100 | | Minus |
BO08118.pep Sequence
Translation from 16 to 1675
> BO08118.pep
MMAQSDSGNCCAKLNKDECCQKTKDVILSGVSPKMFPDKIYKSVQPKGED
ATGMTCECGVFAAIACGDYPTQLDIAQMICLGLVALQHRGQESAGIVTSL
GKSSKNFSVHKGMGMINNLFNDEAIRKLKGNLGIGHTRYSTAAASEVVNC
QPFVVHTAHGALAIAHNGELVNCESLRREVLERGVGLSTHSDSELIAQSL
CCAPEDVSEHDGPNWPARIRHFMTLAPLSYSLVVMHKDKIYAVRDSYGNR
PLCLGKIVPVDAGHANINDQLAEGWVVSSESCGFLSIGARYVREVEPGEI
IELSRNGYRTVDIVERPDYKRMAFCIFEYVYFARSDSMFEGQMVYSARLQ
CGRQLARESPLDADLVSSVPESGTAAAHGYARESGLPFGEVLCKNRYVGR
TFIQPSTRLRQLGVAKKFGALAQNVEGKRIVLVDDSIVRGNTIGPIIKLL
RDAGATEVHIRIASPPLQYPCYMGINIPTREELIANKLNADQLADHVGAD
SLAYLSVEGLVKAVQMNKAHVNPLKAGYCTACLTGEYPGGLPEELSWASF
LDH
BO08118.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat2-PB | 547 | CG10078-PB | 1..547 | 1..547 | 2865 | 100 | Plus |
| Prat2-PA | 470 | CG10078-PA | 1..470 | 78..547 | 2446 | 100 | Plus |
| Prat-PB | 546 | CG2867-PB | 45..546 | 49..547 | 2212 | 83.5 | Plus |
| Prat-PA | 546 | CG2867-PA | 45..546 | 49..547 | 2212 | 83.5 | Plus |
