Clone Sequence Records
BO08119.3prime Sequence
950 bp (774 high quality bases) assembled on 2006-01-06
> BO08119.3prime
ATGGTCTAGAAAGCTTGCCAGCAATCCGCAGCTGGTAAAAAGCAGACCCC
GGCTGAGCTTTCCGTTCTTAGTGCCGTAACTCTGAATGCACTCGCATATC
TTGCTGCCCTTCACAATCCGTCCGAATCCCACGCGGGATCCATTGACCAC
GGTAAGCGGCTTGAACGAGATGGCGAAGGACAGGTGGTGGGTGAATCCCG
TGACGTAAGCTTTGCTGAAGGATAATACGTAGCTGGAGGCCCCGTGGTCA
ATAACTTTGGCGTCGTACTCCAATGGCTGGTGGAGTAGCGAGTCCGACGA
CAGCATCAAATCGGTTTCCAGCCAGAGATTGGGGAACAGTCGTTTGACCA
TAAACTTCGAGTGCTGATTGCACATGCAGGACTTGATCAGCTGCAGCACC
ACCAGCGGAGCAGCCTCTGTGTACAGCTGGACCACAAACCTGCCCAGTGG
TCGGGCATCTTTGAGATAGAGGTCAAAGTAGATACGCGGTCGAAAGAGGC
GGCGTAGTTCGGCATCCGACTTGGGTAGCGGGATGTTGAAGGCCTCGTAC
TTGGCCATTGCTTGGGGCGGCAACTCCAGTGGAGCGACGGGCGTCGAGCT
CCTGCCCTCCCGCATCCGCTTGTCCGACAGACCGGAGTCCACTTCGCTGT
TTACCTCCAGAATGCGTCGACCGAAGTCGCGATTATCGCGCTCCAGTTTC
TCCAGGGTGAGCAGGGCCATGGGAATACTGGAGACGGCGTGCACCGTATC
GTATCGAAACGGATTGATGGCTCCGTGGGTGCGCATCGTCCGCGAAATCT
CCACCAGCAGCTGGATGTTGGCCTTGGTGCGCTTCATAAATGTTTGCGCC
TCGTCTCGGAAGTTGTTCACTCCGGTGATGCGGGCCGCCTGAAAGTTGGG
CGCTTCGGCGTCCACCGTGCTGATCGCCCCCTTGATCCGCTCACGGTGCT
BO08119.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30350-PA | 1110 | CG30350-RA | 176..1107 | 950..19 | 4635 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30350-RA | 1365 | CG30350-RA | 297..1228 | 950..19 | 4645 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:37:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8826687..8827618 | 950..19 | 4645 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:38:00 has no hits.
BO08119.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:27 Download gff for
BO08119.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-PA | 176..1110 | 18..950 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:58 Download gff for
BO08119.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-PA | 176..1110 | 18..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:38:35 Download gff for
BO08119.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-RA | 297..1232 | 13..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:25 Download gff for
BO08119.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-RA | 297..1232 | 13..950 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:25 Download gff for
BO08119.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8826687..8827622 | 13..950 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:38:35 Download gff for
BO08119.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4714192..4715127 | 13..950 | 99 | | Minus |
BO08119.5prime Sequence
922 bp (825 high quality bases) assembled on 2006-01-06
> BO08119.5prime
GAAGTTATCAGTCGACATGGCTGATTTCCCGATGTGTGTGACCCCGTCGC
AGCGAGAGTTGGCTCAGCTCACGGAGCAGGAGCGCCTGACCGCCCAGCTG
AAGGTAAAGGAGCGCAAGAAGGCGGCCAAGGCCAAGCCGAAGAAGATCCT
GGGCGGCCTGCTTATGGTGAATCACATGAAGATGTGGCACCAGCACCGTG
AGCGGATCAAGGGGGCGATCAGCACGGTGGACGCCGAAGCGCCCAACTTT
CAGGCGGCCCGCATCACCGGAGTGAACAACCTCCGAGACGAGGCGCAAAC
ATTTATGAAGCGCACCAAGGCCAACATCCAGCTGCTGGTGGAGATTTCGC
GGACGATGCGCACCCACGGAGCCATCAATCCGTTTCGATACGATACGGTG
CACGCCGTCTCCAGTATTCCCATGGCCCTGCTCACCCTGGAGAAACTGGA
GCGCGATAATCGCGACTTCGGTCGACGCATTCTGGAGGTAAACAGCGAAG
TGGACTCCGGTCTGTCGGACAAGCGGATGCGGGAGGGCAGGAGCTCGACG
CCCGTCGCTCCACTGGAGTTGCCGCCCCAAGCAATGGCCAAGTACGAGGC
CTTCAACATCCCGCTACCCAAGTCGGATGCCGAACTACGCCGCCTCTTTC
GACCGCGTATCTACTTTGACCTCTATCTCAAAGATGCCCGACCACTGGGC
AGGTTTGTGGTCCAGCTGTACACAGAGGCTGCTCCGCTGGTGGTGCTGCA
GCTGATCAAGTCCTGCATGTGCAATCAGCACTCGAAGTTTATGGTCAAAC
GACTGTTCCCCAATCTCTGGCTGGAAACCGATTTGATGCTGTCGTCGGAC
TCGCTACTCCACCAGCCATTGGAGTACGACGCCCAAGTTATTGACCACGG
GGGCTCCAGCTACGTATTATCC
BO08119.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30350-PA | 1110 | CG30350-RA | 1..906 | 17..922 | 4455 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30350-RA | 1365 | CG30350-RA | 122..1027 | 17..922 | 4485 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:38:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8826512..8827417 | 17..922 | 4485 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:38:07 has no hits.
BO08119.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:27 Download gff for
BO08119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-PA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:28:59 Download gff for
BO08119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-PA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:38:37 Download gff for
BO08119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-RA | 114..1027 | 9..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:37 Download gff for
BO08119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-RA | 114..1027 | 9..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:37 Download gff for
BO08119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8826504..8827417 | 9..922 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:38:37 Download gff for
BO08119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4714009..4714922 | 9..922 | 99 | | Plus |
BO08119.complete Sequence
1141 bp (1141 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631062
> BO08119.complete
GAAGTTATCAGTCGACATGGCTGATTTCCCGATGTGTGTGACCCCGTCGC
AGCGAGAGTTGGCTCAGCTCACGGAGCAGGAGCGCCTGACCGCCCAGCTG
AAGGTAAAGGAGCGCAAGAAGGCGGCCAAGGCCAAGCCGAAGAAGATCCT
GGGCGGCCTGCTTATGGTGAATCACATGAAGATGTGGCACCAGCACCGTG
AGCGGATCAAGGGGGCGATCAGCACGGTGGACGCCGAAGCGCCCAACTTT
CAGGCGGCCCGCATCACCGGAGTGAACAACCTCCGAGACGAGGCGCAAAC
ATTTATGAAGCGCACCAAGGCCAACATCCAGCTGCTGGTGGAGATTTCGC
GGACGATGCGCACCCACGGAGCCATCAATCCGTTTCGATACGATACGGTG
CACGCCGTCTCCAGTATTCCCATGGCCCTGCTCACCCTGGAGAAACTGGA
GCGCGATAATCGCGACTTCGGTCGACGCATTCTGGAGGTAAACAGCGAAG
TGGACTCCGGTCTGTCGGACAAGCGGATGCGGGAGGGCAGGAGCTCGACG
CCCGTCGCTCCACTGGAGTTGCCGCCCCAAGCAATGGCCAAGTACGAGGC
CTTCAACATCCCGCTACCCAAGTCGGATGCCGAACTACGCCGCCTCTTTC
GACCGCGTATCTACTTTGACCTCTATCTCAAAGATGCCCGACCACTGGGC
AGGTTTGTGGTCCAGCTGTACACAGAGGCTGCTCCGCTGGTGGTGCTGCA
GCTGATCAAGTCCTGCATGTGCAATCAGCACTCGAAGTTTATGGTCAAAC
GACTGTTCCCCAATCTCTGGCTGGAAACCGATTTGATGCTGTCGTCGGAC
TCGCTACTCCACCAGCCATTGGAGTACGACGCCAAAGTTATTGACCACGG
GGCCTCCAGCTACGTATTATCCTTCAGCAAAGCTTACGTCACGGGATTCA
CCCACCACCTGTCCTTCGCCATCTCGTTCAAGCCGCTTACCGTGGTCAAT
GGATCCCGCGTGGGATTCGGACGGATTGTGAAGGGCAGCAAGATATGCGA
GTGCATTCAGAGTTACGGCACTAAGAACGGAAAGCTCAGCCGGGGTCTGC
TTTTTACCAGCTGCGGATTGCTGGCAAGCTTTCTAGACCAT
BO08119.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30350-RA | 1110 | CG30350-PA | 1..1107 | 17..1123 | 5520 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30350-RA | 1365 | CG30350-RA | 122..1228 | 17..1123 | 5520 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8826512..8827618 | 17..1123 | 5520 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:56:11 has no hits.
BO08119.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:07 Download gff for
BO08119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-RA | 1..1110 | 17..1124 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:15 Download gff for
BO08119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-RA | 114..1232 | 9..1129 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:06 Download gff for
BO08119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-RA | 122..1228 | 17..1125 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:07 Download gff for
BO08119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-RA | 114..1232 | 9..1129 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:29 Download gff for
BO08119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-RA | 122..1228 | 17..1125 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:29 Download gff for
BO08119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8826512..8827618 | 17..1125 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:06 Download gff for
BO08119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4714017..4715123 | 17..1125 | 99 | | Plus |
BO08119.pep Sequence
Translation from 16 to 1141
> BO08119.pep
MADFPMCVTPSQRELAQLTEQERLTAQLKVKERKKAAKAKPKKILGGLLM
VNHMKMWHQHRERIKGAISTVDAEAPNFQAARITGVNNLRDEAQTFMKRT
KANIQLLVEISRTMRTHGAINPFRYDTVHAVSSIPMALLTLEKLERDNRD
FGRRILEVNSEVDSGLSDKRMREGRSSTPVAPLELPPQAMAKYEAFNIPL
PKSDAELRRLFRPRIYFDLYLKDARPLGRFVVQLYTEAAPLVVLQLIKSC
MCNQHSKFMVKRLFPNLWLETDLMLSSDSLLHQPLEYDAKVIDHGASSYV
LSFSKAYVTGFTHHLSFAISFKPLTVVNGSRVGFGRIVKGSKICECIQSY
GTKNGKLSRGLLFTSCGLLASFLDH
BO08119.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30350-PA | 369 | CG30350-PA | 1..369 | 1..369 | 1890 | 100 | Plus |
| CG15767-PA | 370 | CG15767-PA | 38..370 | 62..369 | 542 | 37.3 | Plus |
| CG32236-PA | 385 | CG32236-PA | 75..385 | 48..369 | 301 | 28.3 | Plus |
| CG3492-PA | 404 | CG3492-PA | 178..404 | 149..369 | 291 | 33.5 | Plus |
