Clone Sequence Records
BO08123.3prime Sequence
869 bp (855 high quality bases) assembled on 2006-01-06
> BO08123.3prime
ATGGTCTAGAAAGCTTGCGATCACTCCACAGTCCGTCAGCGAGATCAAGT
TGTGGCTCATGGGCAGGTGTCCGACGGCCACCTGAATCCTCTCCAGGAGC
TGCATGCCCTTGCGAACCTTCCCGAAGGCGATTCTCCTGCCGTTGAGAAT
GGACAGGGGCTTAAAGCTGATGGTGAAGTTGACGGCAGTCCGGGCGTTTC
CCCTGACATAGCGACTGGGAAAGGAGAGGATTCCGGCGTCCACTCCGTGG
TTCAGCACCTCGAAGTCGTGCTCGATGTTGGTCAGCTCGGTGCTTCTCTG
CGGATCCATGGCCAGTCGTCCCTCCATCCAAATGGGCGCCAGGGCGCGGT
TGAATACGATGGCGCTACTGTTGTTCTGGGTGCAGATCCTCATGAACTCC
AGCACCACCTGCGGACAGGCCTCGGTGAAGAGCTGGATGATCAGCCTGCC
CTGGATGCGGGCTTCCCGCACCTCGATGTCCAGGTAGATCTGCGGACGCA
GCAGCTTGCACAGAACGCCCACGTCGCATTGGTCCATCAAGTTCTCGTAG
CGATGGAGCACGTGCATGGGAATCTCGCAGCTGAAGGAGCCCGAGGACTT
GGGCTTGTACCGCTTTGACTTGCCCGCCTCTGGGTCAAACAGCTCGCCTC
CCTTGTGGAACTCCTTGTTCTTCTCCAGTTGGCGGCGCTCCTTCTCCCGG
GCCAAGTTGGCATTGCGCCACCTGCCGGCTGCCAGGCGCTCCGGCGACTT
GGTGAAGGTCCGCAGCGTGTTGTTGCTCTTCTTGTAGAGTGCGGTCAGCA
TCTCCATGTAGGAGAGCTCCATGCCATTTCCCTCGATCTGCACCTTCGGG
GGCGGCAGATAGGTGTTGA
BO08123.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3492-PA | 1215 | CG3492-RA | 362..1212 | 869..19 | 4255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:29:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3492-RA | 1515 | CG3492-RA | 488..1338 | 869..19 | 4255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:29:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24473199..24474049 | 869..19 | 4255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:29:31 has no hits.
BO08123.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:34 Download gff for
BO08123.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3492-PA | 363..1215 | 16..868 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:08 Download gff for
BO08123.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3492-PA | 363..1215 | 16..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:32:54 Download gff for
BO08123.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3492-RA | 489..1338 | 19..868 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:44:01 Download gff for
BO08123.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3492-RA | 489..1338 | 19..868 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:44:01 Download gff for
BO08123.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24473200..24474049 | 19..868 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:32:54 Download gff for
BO08123.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20360723..20361572 | 19..868 | 100 | | Minus |
BO08123.5prime Sequence
902 bp (830 high quality bases) assembled on 2006-01-06
> BO08123.5prime
GAAGTTATCAGTCGACATGTTCATCCGCGGAGATGCGCCACAAGCTTCCC
GGGGCAAAATTCCCCAGATCCCCAGCTCCATGACGCCCTATGTGGCGGCA
GTGAAGCGCGGACCCTACACAATGACCAATCCGGTGTACAACACCCACAA
TCCCAACCTGGTGGGCTTGGATGGCCAGGTGGAGGATTCCCGGCCCAAGC
ACACCTTTAATGTGAAGAGGCAAGAGCTGGAGAATAACTACCGGCACCAC
CAGCGGCTGATCCCCGTGCCCACTTCCCGGAGGACGATGCCCAAGATCCG
ATCCCACATAGTGATGAACGAGCAGCGGGAGCTGTATCGCCAGCACCGCG
ATCGAATGTCCAACATCAAGGGCAAGGTCAACACCTATCTGCCGCCCCCG
AAGGTGCAGATCGAGGGAAATGGCATGGAGCTCTCCTACATGGAGATGCT
GACCGCACTCTACAAGAAGAGCAACAACACGCTGCGGACCTTCACCAAGT
CGCCGGAGCGCCTGGCAGCCGGCAGGTGGCGCAATGCCAACTTGGCCCGG
GAGAAGGAGCGCCGCCAACTGGAGAAGAACAAGGAGTTCCACAAGGGAGG
CGAGCTGTTTGACCCAGAGGCGGGCAAGTCAAAGCGGTACAAGCCCAAGT
CCTCGGGCTCCTTCAGCTGCGAGATTCCCATGCACGTGCTCCATCGCTAC
GAGAACTTGATGGACCAATGCGACGTGGGCGTTCTGTGCAAGCTGCTGCG
TCCGCAGATCTACCTGGACATCGAGGTGCGGGAAGCCCGCATCCAGGGCA
GGCTGATCATCCAGCTCTTCACCGAGGCCTGTCCGCAGGTGGTGCTGGGA
GTCATGAGGATCTGCACCAGAACAACAGTAGCGCCATCGTATTCAACCGC
GC
BO08123.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3492-PA | 1215 | CG3492-RA | 1..832 | 17..848 | 4160 | 100 | Plus |
| CG3492-PA | 1215 | CG3492-RA | 852..887 | 867..902 | 180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:12:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3492-RA | 1515 | CG3492-RA | 127..1013 | 17..902 | 4365 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24472838..24473724 | 17..902 | 4340 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:12:25 has no hits.
BO08123.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:35 Download gff for
BO08123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3492-PA | 1..887 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:09 Download gff for
BO08123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3492-PA | 1..887 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:58:12 Download gff for
BO08123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3492-RA | 120..1013 | 10..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:55:36 Download gff for
BO08123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3492-RA | 120..1013 | 10..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:55:36 Download gff for
BO08123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24472831..24473724 | 10..902 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:58:12 Download gff for
BO08123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20360354..20361247 | 10..902 | 99 | | Plus |
BO08123.complete Sequence
1246 bp (1246 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631063
> BO08123.complete
GAAGTTATCAGTCGACATGTTCATCCGCGGAGATGCGCCACAAGCTTCCC
GGGGCAAAATTCCCCAGATCCCCAGCTCCATGACGCCCTATGTGGCGGCA
GTGAAGCGCGGACCCTACACAATGACCAATCCGGTGTACAACACCCACAA
TCCCAACCTGGTGGGCTTGGATGGCCAGGTGGAGGATTCCCGGCCCAAGC
ACACCTTTAATGTGAAGAGGCAAGAGCTGGAGAATAACTACCGGCACCAC
CAGCGGCTGATCCCCGTGCCCACTTCCCGGAGGACGATGCCCAAGATCCG
ATCCCACATAGTGATGAACGAGCAGCGGGAGCTGTATCGCCAGCACCGCG
ATCGAATGTCCAACATCAAGGGCAAGGTCAACACCTATCTGCCGCCCCCG
AAGGTGCAGATCGAGGGAAATGGCATGGAGCTCTCCTACATGGAGATGCT
GACCGCACTCTACAAGAAGAGCAACAACACGCTGCGGACCTTCACCAAGT
CGCCGGAGCGCCTGGCAGCCGGCAGGTGGCGCAATGCCAACTTGGCCCGG
GAGAAGGAGCGCCGCCAACTGGAGAAGAACAAGGAGTTCCACAAGGGAGG
CGAGCTGTTTGACCCAGAGGCGGGCAAGTCAAAGCGGTACAAGCCCAAGT
CCTCGGGCTCCTTCAGCTGCGAGATTCCCATGCACGTGCTCCATCGCTAC
GAGAACTTGATGGACCAATGCGACGTGGGCGTTCTGTGCAAGCTGCTGCG
TCCGCAGATCTACCTGGACATCGAGGTGCGGGAAGCCCGCATCCAGGGCA
GGCTGATCATCCAGCTCTTCACCGAGGCCTGTCCGCAGGTGGTGCTGGAG
TTCATGAGGATCTGCACCCAGAACAACAGTAGCGCCATCGTATTCAACCG
CGCCCTGGCGCCCATTTGGATGGAGGGACGACTGGCCATGGATCCGCAGA
GAAGCACCGAGCTGACCAACATCGAGCACGACTTCGAGGTGCTGAACCAC
GGAGTGGACGCCGGAATCCTCTCCTTTCCCAGTCGCTATGTCAGGGGAAA
CGCCCGGACTGCCGTCAACTTCACCATCAGCTTTAAGCCCCTGTCCATTC
TCAACGGCAGGAGAATCGCCTTCGGGAAGGTTCGCAAGGGCATGCAGCTC
CTGGAGAGGATTCAGGTGGCCGTCGGACACCTGCCCATGAGCCACAACTT
GATCTCGCTGACGGACTGTGGAGTGATCGCAAGCTTTCTAGACCAT
BO08123.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3492-RA | 1215 | CG3492-PA | 1..1212 | 17..1228 | 6060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:34:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3492-RA | 1515 | CG3492-RA | 127..1338 | 17..1228 | 6060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:34:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24472838..24474049 | 17..1228 | 6060 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:34:52 has no hits.
BO08123.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:10 Download gff for
BO08123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3492-RA | 1..1215 | 17..1231 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:17 Download gff for
BO08123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3492-RA | 120..1338 | 10..1228 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:38 Download gff for
BO08123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3492-RA | 132..1338 | 22..1230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:10 Download gff for
BO08123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3492-RA | 120..1338 | 10..1228 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:04 Download gff for
BO08123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3492-RA | 132..1338 | 22..1230 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:04 Download gff for
BO08123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24472843..24474049 | 22..1230 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:38 Download gff for
BO08123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20360366..20361572 | 22..1230 | 99 | | Plus |
BO08123.pep Sequence
Translation from 16 to 1246
> BO08123.pep
MFIRGDAPQASRGKIPQIPSSMTPYVAAVKRGPYTMTNPVYNTHNPNLVG
LDGQVEDSRPKHTFNVKRQELENNYRHHQRLIPVPTSRRTMPKIRSHIVM
NEQRELYRQHRDRMSNIKGKVNTYLPPPKVQIEGNGMELSYMEMLTALYK
KSNNTLRTFTKSPERLAAGRWRNANLAREKERRQLEKNKEFHKGGELFDP
EAGKSKRYKPKSSGSFSCEIPMHVLHRYENLMDQCDVGVLCKLLRPQIYL
DIEVREARIQGRLIIQLFTEACPQVVLEFMRICTQNNSSAIVFNRALAPI
WMEGRLAMDPQRSTELTNIEHDFEVLNHGVDAGILSFPSRYVRGNARTAV
NFTISFKPLSILNGRRIAFGKVRKGMQLLERIQVAVGHLPMSHNLISLTD
CGVIASFLDH
BO08123.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3492-PA | 404 | CG3492-PA | 1..404 | 1..404 | 2115 | 100 | Plus |
| CG30350-PA | 369 | CG30350-PA | 149..369 | 178..404 | 291 | 33.5 | Plus |
| CG15767-PA | 370 | CG15767-PA | 198..349 | 240..383 | 234 | 35.5 | Plus |
| CG32236-PA | 385 | CG32236-PA | 225..385 | 243..404 | 215 | 34.8 | Plus |
