Clone Sequence Records
BO08124.3prime Sequence
849 bp (822 high quality bases) assembled on 2006-01-06
> BO08124.3prime
ATGGTCTAGAAAGCTTGCGTTAAGCACCTTATAGGGATTGAGGATGCTGT
TGGGGTCCAGCAGCTTCTTCATCTCGCGCATGTAGCCAATGGCCACCGGG
TCCTTGGAGTAGTGCAGGTAGTCCTTCTTCAGGAAGCCAATGCCGTGCTC
CGCACTAATGCTGCCCTTCAGCTTGGAGGTGTACTCGTAGACGAAGGGTT
CGACCCGCTTGTAGATCTCGCCGTTAAACTCCTCGCAGGAGACGTTCAGG
TGCAGATTAGAGTCCCCCAGATGGCCGTATCCGCAGACAACTGTGGCCAG
GGGACCGCACCTCTCTCGCATCACGTCCACAATGTTGTAGAAGTCCCGCA
GAGGCAGCGAGATGTCGTACTTGAAGCAGAAGCTCTTCTCGATCAGACCC
AGCGGCACCATTTCGCGGATCTTCCAGATCTCCTGCACCTTGCCGGGATC
ACCGGTTACGGTGCCATCCTGGATCTCGCCACGCTCCATACCGTCCCCAA
TGAACTGGTTGATCTTCTCCTCGTCGTGGTCACCGTTGCTGCCCGAGGTC
TCGATGAGCATGTAGAAGGGAAATCCCGAAATGGGGGAGTTCAGGAACTT
GAACTGCTCGAGGGCGGTGTTCAAGGCCCGCTCGTCAATCAGCTCGCAGG
AGCTTAGAATCTCGCCCAGATTACGCTTGGCACTGACAAAAGTCTTCAGC
ACATCGTCGAAGGAGTTCAGGCCGATGAAGGCCACGTTCACCGCTCGCGA
GGAATGGGGGCAGAGCATCGAAAGCTTCGTGACCACGCCCAGAGTGCCCT
CGGATCCTATGAACAAGTGCTTCATGTGGTAGCCGGTGTTGTCCTTCTT
BO08124.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3835-PB | 1602 | CG3835-RB | 769..1599 | 849..19 | 4155 | 100 | Minus |
CG3835-PC | 1602 | CG3835-RC | 769..1599 | 849..19 | 4155 | 100 | Minus |
CG3835-PA | 1602 | CG3835-RA | 769..1599 | 849..19 | 4155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:35:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3835-RA | 1987 | CG3835-RA | 1077..1907 | 849..19 | 4155 | 100 | Minus |
CG3835-RC | 1966 | CG3835-RC | 1056..1886 | 849..19 | 4155 | 100 | Minus |
CG3835-RB | 1862 | CG3835-RB | 952..1782 | 849..19 | 4155 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:35:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2144287..2144857 | 589..19 | 2855 | 100 | Minus |
X | 23542271 | X | 2143961..2144220 | 849..590 | 1300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:35:08 has no hits.
BO08124.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:36 Download gff for
BO08124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-PC | 769..1602 | 16..849 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:11 Download gff for
BO08124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-PA | 769..1602 | 16..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:10:23 Download gff for
BO08124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-RB | 952..1794 | 7..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:54:54 Download gff for
BO08124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-RB | 952..1794 | 7..849 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:54:54 Download gff for
BO08124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2143961..2144220 | 590..849 | 100 | -> | Minus |
X | 2144287..2144869 | 7..589 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:10:23 Download gff for
BO08124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2037994..2038253 | 590..849 | 100 | -> | Minus |
arm_X | 2038320..2038902 | 7..589 | 99 | | Minus |
BO08124.5prime Sequence
936 bp (853 high quality bases) assembled on 2006-01-06
> BO08124.5prime
GAAGTTATCAGTCGACATGAGATTCCAACAGCTCCTGCATGTGCGCAGAT
TGGCCAGCGCCGGGGCCACCACCTTGATGAGGCGGCCTATCACCACCACC
ACCATCACCACCACCAGTCGCACCGCCCTGGCAGCCACCTACCCCGCTTT
CGCAACCACTGTGCGCACAATGGCGGGCAGCGGGGCTCCGATCCCGGAGC
TCACAGAGATCACCGACAACGTGCAGCGCGGCAACTACGCCACTCTGACC
GACAAGGATGTGGCGCATTTCGAGCAGCTCCTGGGCAAGAACTTCGTGCT
CACTGAGGACCTGGAGGGATACAACATCTGCTTCCTTAAGAGGATTCGAG
GCAACAGCAAGTTGGTGCTTAAGCCCGGAAGCACGGCGGAGGTGGCCGCC
ATCCTGAAGTACTGCAACGAGCGTCGTTTGGCGGTGGTGCCGCAGGGCGG
GAACACAGGTCTAGTGGGCGGATCCGTGCCGATCTGCGACGAGATTGTCC
TTTCTCTAGCGCGCCTGAACAAGGTGTTATCCGTGGACGAGGTCACCGGC
ATTGCTGTCGTGGAGGCGGGCTGCATCCTGGAGAACTTCGATCAGAGGGC
CAGAGAGGTGGGCTTGACGGTGCCACTGGACCTGGGCGCCAAGGCCAGTT
GCCACATCGGGGGCAATGTGTCCACAAACGCGGGCGGAGTGCGGGTGGTG
CGTTACGGCAATCTGCACGGCTCTGTTTTGGGCGTGGAGGCGGTGCTGGC
CACCGGTCAGGTGCTGGACCTTATGTCCAACTTCAAGAAGGACAACACCG
GCTACCACATGAAGCACTTGTTCATAGGATCCGAGGGCACTCTGGGCGTG
GTCACGAAGCTTTCGATGCTCTGCCCCCATTCCTCGCGAGCGGTGAAACG
TGCCCTCATCGGCCTGAACTCCTTCGACGATGTGCT
BO08124.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3835-PB | 1602 | CG3835-RB | 1..881 | 17..897 | 4405 | 100 | Plus |
CG3835-PC | 1602 | CG3835-RC | 1..881 | 17..897 | 4405 | 100 | Plus |
CG3835-PA | 1602 | CG3835-RA | 1..881 | 17..897 | 4405 | 100 | Plus |
CG3835-PB | 1602 | CG3835-RB | 890..920 | 906..936 | 155 | 100 | Plus |
CG3835-PC | 1602 | CG3835-RC | 890..920 | 906..936 | 155 | 100 | Plus |
CG3835-PA | 1602 | CG3835-RA | 890..920 | 906..936 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:41:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3835-RA | 1987 | CG3835-RA | 309..1228 | 17..936 | 4540 | 99.7 | Plus |
CG3835-RC | 1966 | CG3835-RC | 288..1207 | 17..936 | 4540 | 99.7 | Plus |
CG3835-RB | 1862 | CG3835-RB | 184..1103 | 17..936 | 4540 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:41:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2143525..2144112 | 349..936 | 2865 | 99.1 | Plus |
X | 23542271 | X | 2143057..2143248 | 17..208 | 960 | 100 | Plus |
X | 23542271 | X | 2143309..2143453 | 207..351 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:41:57 has no hits.
BO08124.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:37 Download gff for
BO08124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-PC | 1..920 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:12 Download gff for
BO08124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-PA | 1..920 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:59:42 Download gff for
BO08124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-RB | 174..1103 | 7..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:09:41 Download gff for
BO08124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-RB | 174..1103 | 7..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:09:41 Download gff for
BO08124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2143047..2143248 | 7..208 | 98 | -> | Plus |
X | 2143311..2143452 | 209..350 | 100 | -> | Plus |
X | 2143527..2144112 | 351..936 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:59:42 Download gff for
BO08124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2037080..2037281 | 7..208 | 98 | -> | Plus |
arm_X | 2037344..2037485 | 209..350 | 100 | -> | Plus |
arm_X | 2037560..2038145 | 351..936 | 99 | | Plus |
BO08124.complete Sequence
1633 bp (1633 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631064
> BO08124.complete
GAAGTTATCAGTCGACATGAGATTCCAACAGCTCCTGCATGTGCGCAGAT
TGGCCAGCGCCGGGGCCACCACCTTGATGAGGCGGCCTATCACCACCACC
ACCATCACCACCACCAGTCGCACCGCCCTGGCAGCCACCTACCCCGCTTT
CGCAACCACTGTGCGCACAATGGCGGGCAGCGGGGCTCCGATCCCGGAGC
TCACAGAGATCACCGACAACGTGCAGCGCGGCAACTACGCCACTCTGACC
GACAAGGATGTGGCGCATTTCGAGCAGCTCCTGGGCAAGAACTTCGTGCT
CACTGAGGACCTGGAGGGATACAACATCTGCTTCCTTAAGAGGATTCGAG
GCAACAGCAAGTTGGTGCTTAAGCCCGGAAGCACGGCGGAGGTGGCCGCC
ATCCTGAAGTACTGCAACGAGCGTCGTTTGGCGGTGGTGCCGCAGGGCGG
GAACACAGGTCTAGTGGGCGGATCCGTGCCGATCTGCGACGAGATTGTCC
TTTCTCTAGCGCGCCTGAACAAGGTGTTATCCGTGGACGAGGTCACCGGC
ATTGCTGTCGTGGAGGCGGGCTGCATCCTGGAGAACTTCGATCAGAGGGC
CAGAGAGGTGGGCTTGACGGTGCCACTGGACCTGGGCGCCAAGGCCAGTT
GCCACATCGGGGGCAATGTGTCCACAAACGCGGGCGGAGTGCGGGTGGTG
CGTTACGGCAATCTGCACGGCTCTGTTTTGGGCGTGGAGGCGGTGCTGGC
CACCGGTCAGGTGCTGGACCTTATGTCCAACTTCAAGAAGGACAACACCG
GCTACCACATGAAGCACTTGTTCATAGGATCCGAGGGCACTCTGGGCGTG
GTCACGAAGCTTTCGATGCTCTGCCCCCATTCCTCGCGAGCGGTGAACGT
GGCCTTCATCGGCCTGAACTCCTTCGACGATGTGCTGAAGACTTTTGTCA
GTGCCAAGCGTAATCTGGGCGAGATTCTAAGCTCCTGCGAGCTGATTGAC
GAGCGGGCCTTGAACACCGCCCTCGAGCAGTTCAAGTTCCTGAACTCCCC
CATTTCGGGATTTCCCTTCTACATGCTCATCGAGACCTCGGGCAGCAACG
GTGACCACGACGAGGAGAAGATCAACCAGTTCATTGGGGACGGTATGGAG
CGTGGCGAGATCCAGGATGGCACCGTAACCGGTGATCCCGGCAAGGTGCA
GGAGATCTGGAAGATCCGCGAAATGGTGCCGCTGGGTCTGATCGAGAAGA
GCTTCTGCTTCAAGTACGACATCTCGCTGCCTCTGCGGGACTTCTACAAC
ATTGTGGACGTGATGCGAGAGAGGTGCGGTCCCCTGGCCACAGTTGTCTG
CGGATACGGCCATCTGGGGGACTCTAATCTGCACCTGAACGTCTCCTGCG
AGGAGTTTAACGGCGAGATCTACAAGCGGGTCGAACCCTTCGTCTACGAG
TACACCTCCAAGCTGAAGGGCAGCATTAGTGCGGAGCACGGCATTGGCTT
CCTGAAGAAGGACTACCTGCACTACTCCAAGGACCCGGTGGCCATTGGCT
ACATGCGCGAGATGAAGAAGCTGCTGGACCCCAACAGCATCCTCAATCCC
TATAAGGTGCTTAACGCAAGCTTTCTAGACCAT
BO08124.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3835-RA | 1602 | CG3835-PA | 1..1599 | 17..1615 | 7995 | 100 | Plus |
CG3835-RC | 1602 | CG3835-PC | 1..1599 | 17..1615 | 7995 | 100 | Plus |
CG3835-RB | 1602 | CG3835-PB | 1..1599 | 17..1615 | 7995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:38:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3835-RA | 1987 | CG3835-RA | 309..1907 | 17..1615 | 7995 | 100 | Plus |
CG3835-RC | 1966 | CG3835-RC | 288..1886 | 17..1615 | 7995 | 100 | Plus |
CG3835-RB | 1862 | CG3835-RB | 184..1782 | 17..1615 | 7995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:38:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2143525..2144220 | 349..1044 | 3480 | 100 | Plus |
X | 23542271 | X | 2144287..2144857 | 1045..1615 | 2855 | 100 | Plus |
X | 23542271 | X | 2143057..2143248 | 17..208 | 960 | 100 | Plus |
X | 23542271 | X | 2143309..2143453 | 207..351 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:38:48 has no hits.
BO08124.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:56 Download gff for
BO08124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-RA | 1..1602 | 17..1618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:00 Download gff for
BO08124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-RA | 254..1874 | 7..1627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:46 Download gff for
BO08124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-RB | 184..1782 | 17..1617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:56 Download gff for
BO08124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-RA | 254..1874 | 7..1627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:51 Download gff for
BO08124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-RB | 184..1782 | 17..1617 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:51 Download gff for
BO08124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2143311..2143452 | 209..350 | 100 | -> | Plus |
X | 2143057..2143248 | 17..208 | 100 | -> | Plus |
X | 2143527..2144220 | 351..1044 | 100 | -> | Plus |
X | 2144287..2144857 | 1045..1617 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:46 Download gff for
BO08124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2037090..2037281 | 17..208 | 100 | -> | Plus |
arm_X | 2037344..2037485 | 209..350 | 100 | -> | Plus |
arm_X | 2037560..2038253 | 351..1044 | 100 | -> | Plus |
arm_X | 2038320..2038890 | 1045..1617 | 99 | | Plus |
BO08124.pep Sequence
Translation from 16 to 1633
> BO08124.pep
MRFQQLLHVRRLASAGATTLMRRPITTTTITTTSRTALAATYPAFATTVR
TMAGSGAPIPELTEITDNVQRGNYATLTDKDVAHFEQLLGKNFVLTEDLE
GYNICFLKRIRGNSKLVLKPGSTAEVAAILKYCNERRLAVVPQGGNTGLV
GGSVPICDEIVLSLARLNKVLSVDEVTGIAVVEAGCILENFDQRAREVGL
TVPLDLGAKASCHIGGNVSTNAGGVRVVRYGNLHGSVLGVEAVLATGQVL
DLMSNFKKDNTGYHMKHLFIGSEGTLGVVTKLSMLCPHSSRAVNVAFIGL
NSFDDVLKTFVSAKRNLGEILSSCELIDERALNTALEQFKFLNSPISGFP
FYMLIETSGSNGDHDEEKINQFIGDGMERGEIQDGTVTGDPGKVQEIWKI
REMVPLGLIEKSFCFKYDISLPLRDFYNIVDVMRERCGPLATVVCGYGHL
GDSNLHLNVSCEEFNGEIYKRVEPFVYEYTSKLKGSISAEHGIGFLKKDY
LHYSKDPVAIGYMREMKKLLDPNSILNPYKVLNASFLDH
BO08124.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3835-PA | 533 | CG3835-PA | 1..533 | 1..533 | 2748 | 100 | Plus |
CG3835-PC | 533 | CG3835-PC | 1..533 | 1..533 | 2748 | 100 | Plus |
CG3835-PB | 533 | CG3835-PB | 1..533 | 1..533 | 2748 | 100 | Plus |
CG10253-PC | 631 | CG10253-PC | 161..330 | 116..282 | 173 | 28.7 | Plus |
CG10253-PB | 631 | CG10253-PB | 161..330 | 116..282 | 173 | 28.7 | Plus |