Clone BO08124 Report

Search the DGRC for BO08124

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:81
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG3835-RA
Protein status:BO08124.pep: validated full length
Sequenced Size:1633

Clone Sequence Records

BO08124.3prime Sequence

849 bp (822 high quality bases) assembled on 2006-01-06

> BO08124.3prime
ATGGTCTAGAAAGCTTGCGTTAAGCACCTTATAGGGATTGAGGATGCTGT
TGGGGTCCAGCAGCTTCTTCATCTCGCGCATGTAGCCAATGGCCACCGGG
TCCTTGGAGTAGTGCAGGTAGTCCTTCTTCAGGAAGCCAATGCCGTGCTC
CGCACTAATGCTGCCCTTCAGCTTGGAGGTGTACTCGTAGACGAAGGGTT
CGACCCGCTTGTAGATCTCGCCGTTAAACTCCTCGCAGGAGACGTTCAGG
TGCAGATTAGAGTCCCCCAGATGGCCGTATCCGCAGACAACTGTGGCCAG
GGGACCGCACCTCTCTCGCATCACGTCCACAATGTTGTAGAAGTCCCGCA
GAGGCAGCGAGATGTCGTACTTGAAGCAGAAGCTCTTCTCGATCAGACCC
AGCGGCACCATTTCGCGGATCTTCCAGATCTCCTGCACCTTGCCGGGATC
ACCGGTTACGGTGCCATCCTGGATCTCGCCACGCTCCATACCGTCCCCAA
TGAACTGGTTGATCTTCTCCTCGTCGTGGTCACCGTTGCTGCCCGAGGTC
TCGATGAGCATGTAGAAGGGAAATCCCGAAATGGGGGAGTTCAGGAACTT
GAACTGCTCGAGGGCGGTGTTCAAGGCCCGCTCGTCAATCAGCTCGCAGG
AGCTTAGAATCTCGCCCAGATTACGCTTGGCACTGACAAAAGTCTTCAGC
ACATCGTCGAAGGAGTTCAGGCCGATGAAGGCCACGTTCACCGCTCGCGA
GGAATGGGGGCAGAGCATCGAAAGCTTCGTGACCACGCCCAGAGTGCCCT
CGGATCCTATGAACAAGTGCTTCATGTGGTAGCCGGTGTTGTCCTTCTT

BO08124.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3835-PB 1602 CG3835-RB 769..1599 849..19 4155 100 Minus
CG3835-PC 1602 CG3835-RC 769..1599 849..19 4155 100 Minus
CG3835-PA 1602 CG3835-RA 769..1599 849..19 4155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3835-RA 1987 CG3835-RA 1077..1907 849..19 4155 100 Minus
CG3835-RC 1966 CG3835-RC 1056..1886 849..19 4155 100 Minus
CG3835-RB 1862 CG3835-RB 952..1782 849..19 4155 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2144287..2144857 589..19 2855 100 Minus
X 23542271 X 2143961..2144220 849..590 1300 100 Minus
Blast to na_te.dros performed on 2015-02-13 13:35:08 has no hits.

BO08124.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:36 Download gff for BO08124.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3835-PC 769..1602 16..849 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:11 Download gff for BO08124.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3835-PA 769..1602 16..849 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:10:23 Download gff for BO08124.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3835-RB 952..1794 7..849 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:54:54 Download gff for BO08124.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3835-RB 952..1794 7..849 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:54:54 Download gff for BO08124.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2143961..2144220 590..849 100 -> Minus
X 2144287..2144869 7..589 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:10:23 Download gff for BO08124.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2037994..2038253 590..849 100 -> Minus
arm_X 2038320..2038902 7..589 99   Minus

BO08124.5prime Sequence

936 bp (853 high quality bases) assembled on 2006-01-06

> BO08124.5prime
GAAGTTATCAGTCGACATGAGATTCCAACAGCTCCTGCATGTGCGCAGAT
TGGCCAGCGCCGGGGCCACCACCTTGATGAGGCGGCCTATCACCACCACC
ACCATCACCACCACCAGTCGCACCGCCCTGGCAGCCACCTACCCCGCTTT
CGCAACCACTGTGCGCACAATGGCGGGCAGCGGGGCTCCGATCCCGGAGC
TCACAGAGATCACCGACAACGTGCAGCGCGGCAACTACGCCACTCTGACC
GACAAGGATGTGGCGCATTTCGAGCAGCTCCTGGGCAAGAACTTCGTGCT
CACTGAGGACCTGGAGGGATACAACATCTGCTTCCTTAAGAGGATTCGAG
GCAACAGCAAGTTGGTGCTTAAGCCCGGAAGCACGGCGGAGGTGGCCGCC
ATCCTGAAGTACTGCAACGAGCGTCGTTTGGCGGTGGTGCCGCAGGGCGG
GAACACAGGTCTAGTGGGCGGATCCGTGCCGATCTGCGACGAGATTGTCC
TTTCTCTAGCGCGCCTGAACAAGGTGTTATCCGTGGACGAGGTCACCGGC
ATTGCTGTCGTGGAGGCGGGCTGCATCCTGGAGAACTTCGATCAGAGGGC
CAGAGAGGTGGGCTTGACGGTGCCACTGGACCTGGGCGCCAAGGCCAGTT
GCCACATCGGGGGCAATGTGTCCACAAACGCGGGCGGAGTGCGGGTGGTG
CGTTACGGCAATCTGCACGGCTCTGTTTTGGGCGTGGAGGCGGTGCTGGC
CACCGGTCAGGTGCTGGACCTTATGTCCAACTTCAAGAAGGACAACACCG
GCTACCACATGAAGCACTTGTTCATAGGATCCGAGGGCACTCTGGGCGTG
GTCACGAAGCTTTCGATGCTCTGCCCCCATTCCTCGCGAGCGGTGAAACG
TGCCCTCATCGGCCTGAACTCCTTCGACGATGTGCT

BO08124.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3835-PB 1602 CG3835-RB 1..881 17..897 4405 100 Plus
CG3835-PC 1602 CG3835-RC 1..881 17..897 4405 100 Plus
CG3835-PA 1602 CG3835-RA 1..881 17..897 4405 100 Plus
CG3835-PB 1602 CG3835-RB 890..920 906..936 155 100 Plus
CG3835-PC 1602 CG3835-RC 890..920 906..936 155 100 Plus
CG3835-PA 1602 CG3835-RA 890..920 906..936 155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3835-RA 1987 CG3835-RA 309..1228 17..936 4540 99.7 Plus
CG3835-RC 1966 CG3835-RC 288..1207 17..936 4540 99.7 Plus
CG3835-RB 1862 CG3835-RB 184..1103 17..936 4540 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2143525..2144112 349..936 2865 99.1 Plus
X 23542271 X 2143057..2143248 17..208 960 100 Plus
X 23542271 X 2143309..2143453 207..351 725 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:41:57 has no hits.

BO08124.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:37 Download gff for BO08124.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3835-PC 1..920 17..936 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:12 Download gff for BO08124.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3835-PA 1..920 17..936 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:59:42 Download gff for BO08124.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3835-RB 174..1103 7..936 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:09:41 Download gff for BO08124.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3835-RB 174..1103 7..936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:09:41 Download gff for BO08124.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2143047..2143248 7..208 98 -> Plus
X 2143311..2143452 209..350 100 -> Plus
X 2143527..2144112 351..936 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:59:42 Download gff for BO08124.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2037080..2037281 7..208 98 -> Plus
arm_X 2037344..2037485 209..350 100 -> Plus
arm_X 2037560..2038145 351..936 99   Plus

BO08124.complete Sequence

1633 bp (1633 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631064

> BO08124.complete
GAAGTTATCAGTCGACATGAGATTCCAACAGCTCCTGCATGTGCGCAGAT
TGGCCAGCGCCGGGGCCACCACCTTGATGAGGCGGCCTATCACCACCACC
ACCATCACCACCACCAGTCGCACCGCCCTGGCAGCCACCTACCCCGCTTT
CGCAACCACTGTGCGCACAATGGCGGGCAGCGGGGCTCCGATCCCGGAGC
TCACAGAGATCACCGACAACGTGCAGCGCGGCAACTACGCCACTCTGACC
GACAAGGATGTGGCGCATTTCGAGCAGCTCCTGGGCAAGAACTTCGTGCT
CACTGAGGACCTGGAGGGATACAACATCTGCTTCCTTAAGAGGATTCGAG
GCAACAGCAAGTTGGTGCTTAAGCCCGGAAGCACGGCGGAGGTGGCCGCC
ATCCTGAAGTACTGCAACGAGCGTCGTTTGGCGGTGGTGCCGCAGGGCGG
GAACACAGGTCTAGTGGGCGGATCCGTGCCGATCTGCGACGAGATTGTCC
TTTCTCTAGCGCGCCTGAACAAGGTGTTATCCGTGGACGAGGTCACCGGC
ATTGCTGTCGTGGAGGCGGGCTGCATCCTGGAGAACTTCGATCAGAGGGC
CAGAGAGGTGGGCTTGACGGTGCCACTGGACCTGGGCGCCAAGGCCAGTT
GCCACATCGGGGGCAATGTGTCCACAAACGCGGGCGGAGTGCGGGTGGTG
CGTTACGGCAATCTGCACGGCTCTGTTTTGGGCGTGGAGGCGGTGCTGGC
CACCGGTCAGGTGCTGGACCTTATGTCCAACTTCAAGAAGGACAACACCG
GCTACCACATGAAGCACTTGTTCATAGGATCCGAGGGCACTCTGGGCGTG
GTCACGAAGCTTTCGATGCTCTGCCCCCATTCCTCGCGAGCGGTGAACGT
GGCCTTCATCGGCCTGAACTCCTTCGACGATGTGCTGAAGACTTTTGTCA
GTGCCAAGCGTAATCTGGGCGAGATTCTAAGCTCCTGCGAGCTGATTGAC
GAGCGGGCCTTGAACACCGCCCTCGAGCAGTTCAAGTTCCTGAACTCCCC
CATTTCGGGATTTCCCTTCTACATGCTCATCGAGACCTCGGGCAGCAACG
GTGACCACGACGAGGAGAAGATCAACCAGTTCATTGGGGACGGTATGGAG
CGTGGCGAGATCCAGGATGGCACCGTAACCGGTGATCCCGGCAAGGTGCA
GGAGATCTGGAAGATCCGCGAAATGGTGCCGCTGGGTCTGATCGAGAAGA
GCTTCTGCTTCAAGTACGACATCTCGCTGCCTCTGCGGGACTTCTACAAC
ATTGTGGACGTGATGCGAGAGAGGTGCGGTCCCCTGGCCACAGTTGTCTG
CGGATACGGCCATCTGGGGGACTCTAATCTGCACCTGAACGTCTCCTGCG
AGGAGTTTAACGGCGAGATCTACAAGCGGGTCGAACCCTTCGTCTACGAG
TACACCTCCAAGCTGAAGGGCAGCATTAGTGCGGAGCACGGCATTGGCTT
CCTGAAGAAGGACTACCTGCACTACTCCAAGGACCCGGTGGCCATTGGCT
ACATGCGCGAGATGAAGAAGCTGCTGGACCCCAACAGCATCCTCAATCCC
TATAAGGTGCTTAACGCAAGCTTTCTAGACCAT

BO08124.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3835-RA 1602 CG3835-PA 1..1599 17..1615 7995 100 Plus
CG3835-RC 1602 CG3835-PC 1..1599 17..1615 7995 100 Plus
CG3835-RB 1602 CG3835-PB 1..1599 17..1615 7995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3835-RA 1987 CG3835-RA 309..1907 17..1615 7995 100 Plus
CG3835-RC 1966 CG3835-RC 288..1886 17..1615 7995 100 Plus
CG3835-RB 1862 CG3835-RB 184..1782 17..1615 7995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2143525..2144220 349..1044 3480 100 Plus
X 23542271 X 2144287..2144857 1045..1615 2855 100 Plus
X 23542271 X 2143057..2143248 17..208 960 100 Plus
X 23542271 X 2143309..2143453 207..351 725 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:38:48 has no hits.

BO08124.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:56 Download gff for BO08124.complete
Subject Subject Range Query Range Percent Splice Strand
CG3835-RA 1..1602 17..1618 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:00 Download gff for BO08124.complete
Subject Subject Range Query Range Percent Splice Strand
CG3835-RA 254..1874 7..1627 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:46 Download gff for BO08124.complete
Subject Subject Range Query Range Percent Splice Strand
CG3835-RB 184..1782 17..1617 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:56 Download gff for BO08124.complete
Subject Subject Range Query Range Percent Splice Strand
CG3835-RA 254..1874 7..1627 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:51 Download gff for BO08124.complete
Subject Subject Range Query Range Percent Splice Strand
CG3835-RB 184..1782 17..1617 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:51 Download gff for BO08124.complete
Subject Subject Range Query Range Percent Splice Strand
X 2143311..2143452 209..350 100 -> Plus
X 2143057..2143248 17..208 100 -> Plus
X 2143527..2144220 351..1044 100 -> Plus
X 2144287..2144857 1045..1617 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:46 Download gff for BO08124.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2037090..2037281 17..208 100 -> Plus
arm_X 2037344..2037485 209..350 100 -> Plus
arm_X 2037560..2038253 351..1044 100 -> Plus
arm_X 2038320..2038890 1045..1617 99   Plus

BO08124.pep Sequence

Translation from 16 to 1633

> BO08124.pep
MRFQQLLHVRRLASAGATTLMRRPITTTTITTTSRTALAATYPAFATTVR
TMAGSGAPIPELTEITDNVQRGNYATLTDKDVAHFEQLLGKNFVLTEDLE
GYNICFLKRIRGNSKLVLKPGSTAEVAAILKYCNERRLAVVPQGGNTGLV
GGSVPICDEIVLSLARLNKVLSVDEVTGIAVVEAGCILENFDQRAREVGL
TVPLDLGAKASCHIGGNVSTNAGGVRVVRYGNLHGSVLGVEAVLATGQVL
DLMSNFKKDNTGYHMKHLFIGSEGTLGVVTKLSMLCPHSSRAVNVAFIGL
NSFDDVLKTFVSAKRNLGEILSSCELIDERALNTALEQFKFLNSPISGFP
FYMLIETSGSNGDHDEEKINQFIGDGMERGEIQDGTVTGDPGKVQEIWKI
REMVPLGLIEKSFCFKYDISLPLRDFYNIVDVMRERCGPLATVVCGYGHL
GDSNLHLNVSCEEFNGEIYKRVEPFVYEYTSKLKGSISAEHGIGFLKKDY
LHYSKDPVAIGYMREMKKLLDPNSILNPYKVLNASFLDH

BO08124.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3835-PA 533 CG3835-PA 1..533 1..533 2748 100 Plus
CG3835-PC 533 CG3835-PC 1..533 1..533 2748 100 Plus
CG3835-PB 533 CG3835-PB 1..533 1..533 2748 100 Plus
CG10253-PC 631 CG10253-PC 161..330 116..282 173 28.7 Plus
CG10253-PB 631 CG10253-PB 161..330 116..282 173 28.7 Plus