Clone Sequence Records
BO08125.3prime Sequence
897 bp (828 high quality bases) assembled on 2006-01-06
> BO08125.3prime
ATGGTCTAGAAAGCTTGCCACGATCTCGTACTTTTCCACGAACAGAATGG
ACTCGCTTGAATACTTGACCGCCGCCTCGCTGTCCACCTGCACCACATCC
TGGGCCACGACGCCCGCATACGGCGTTTTCGAGACGAAGGACACCTGCAA
GGGGAAGAAGTCACCGGGAATGGAGGCACTGCAGCTGAACTCCATAGAAC
CGGACTTGTTGGCGGCATCGATTATTGGAATGTGCCACTGGAGCACATGC
TTGCGTGAATCGTAGTTGTAGGTGCCGTCGTACTCCGCCACCGAAGGCTG
CACATTCATTGGCAAGGGAATGACAATGGCCACGTCCTGCAGCTCTAGCT
GCTGCGCCTCCAGTTCATACTCAATGTTAACATCGCATCCACCCTCTCCA
TTATCCGATGGCCAGCAGTTAATGGTCAGCGGGACTGCCGACTCGTCCTG
CGAGACGAAGCGCCACTTGAGCACACCCACATCGGTGTTAAGGGGAAACG
GCTTGCCCAAGTTCTTTAGTCCGATGGTAGTGCGCGACTTGAACAGCTCC
TTGTCCACGTTGGGGTGGGTCTGCAACTGCAGGCCCTGTGTGTGGTTGGG
AGACAGCTTCAGCAAAATGCGTCCGTAGGCCTCGTCCGTAATGCGCAACG
TCAGGAGGCCCGAGTTCTCGAACTGCTGCACGCCACCATCGCGTCCCAGA
CGCACTACTAGCTTGTCCTCAATCTTCAGATGTACGCTCTCTTTGTGAAT
GTCCGACGCGATAGCTGCCTTGGCCGCTGCACTGGCGCTAGCTGCAGCAC
TGGAACCTCCAGCGGGCGCCGCCGGTGCCAGATTGGCAATCTTCTCGCCC
TCGTTCTTCAGCTGATCCACGAAACTATCGACGTCCTTGGACTTGCC
BO08125.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14813-PA | 1599 | deltaCOP-RA | 718..1596 | 897..19 | 4395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:35:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| deltaCOP-RB | 2167 | CG14813-RB | 908..1786 | 897..19 | 4395 | 100 | Minus |
| deltaCOP-RA | 2170 | CG14813-RA | 911..1789 | 897..19 | 4395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1860053..1860372 | 419..738 | 1585 | 99.7 | Plus |
| X | 23542271 | X | 1859522..1859813 | 19..310 | 1460 | 100 | Plus |
| X | 23542271 | X | 1860427..1860587 | 737..897 | 805 | 100 | Plus |
| X | 23542271 | X | 1859871..1859982 | 311..422 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:35:12 has no hits.
BO08125.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:37 Download gff for
BO08125.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14813-PA | 718..1599 | 18..897 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:13 Download gff for
BO08125.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14813-PA | 718..1599 | 18..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:27:42 Download gff for
BO08125.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 913..1796 | 13..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:52:11 Download gff for
BO08125.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 911..1794 | 13..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:52:11 Download gff for
BO08125.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1859871..1859982 | 311..422 | 100 | <- | Plus |
| X | 1859517..1859813 | 13..310 | 98 | <- | Plus |
| X | 1860057..1860370 | 423..736 | 100 | <- | Plus |
| X | 1860427..1860587 | 737..897 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:27:42 Download gff for
BO08125.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1753550..1753846 | 13..310 | 98 | <- | Plus |
| arm_X | 1753904..1754015 | 311..422 | 100 | <- | Plus |
| arm_X | 1754090..1754403 | 423..736 | 100 | <- | Plus |
| arm_X | 1754460..1754620 | 737..897 | 100 | | Plus |
BO08125.5prime Sequence
953 bp (813 high quality bases) assembled on 2006-01-06
> BO08125.5prime
GAAGTTATCAGTCGACATGGTATTAATTGCTGCGGCTGTCTGCACGAAGA
ATGGCAAAGTGATTCTGTCACGTCAGTTCGTCGAGATGACGAAGGCACGC
ATCGAGGGACTGCTGGCTGCCTTTCCCAAGCTGATGACTGCTGGCAAGCA
GCACACTTACGTGGAGACGGACTCCGTGCGCTACGTCTACCAGCCGATGG
AGAAACTATATATGCTGCTCATCACCACTAAGGCCAGCAACATTCTGGAG
GATCTGGAGACCCTGCGCCTCTTCTCGAAAGTGATTCCCGAGTACAGCCA
CTCGCTCGACGAGAAGGAGATTGTGGAGAATGCCTTCAATCTGATCTTCG
CATTTGACGAGATCGTGGCACTCGGCTACAGGGAGAGCGTCAACTTGGCC
CAGATCAAGACCTTCGTGGAGATGGACTCACATGAGGAGAAGGTCTACCA
GGCAGTGCGTCAGACGCAGGAGCGTGATGCGCGCCAGAAGATGCGCGAGA
AGGCCAAGGAACTGCAGCGGCAGCGCATGGAGGCCAGCAAACGGGGTGGT
CCCTCCCTGGGTGGCATTGGCAGCCGCAGCGGCGGCTTTAGCGCCGACGG
AATTGGCAGTAGCGGCGTGAGCAGCAGTTCCGGTGCCTCCAGCGCCAACA
CCGGCATCACCTCCATCGATGTGGACACCAAATCCAAGGCGGCTGCCAGT
AAACCAGCTTCCCGCAATGCCCTCAAGCTAGGTGGCAAGTCCAAGGACGT
CGATAGTTTCGTGGATCAGCTGAAGAACGAGGGCGAGAAGATTGCCAATC
TGGCACCGGCGGCGCCCGCTGGAGGTTCCAGTGCTGCAGCTAGCGCCAGT
GCAGCGGCCAAAGCAGCTATCGCGTCGGACATTCACAAAGAGAGCGTACA
TCTGAAGATTGAGGACAAGCTAGTAGTGCGTCTGGGACGCGATGGTGGCG
TGC
BO08125.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14813-PA | 1599 | deltaCOP-RA | 1..937 | 17..953 | 4660 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:06:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| deltaCOP-RA | 2170 | CG14813-RA | 194..1130 | 17..953 | 4670 | 99.9 | Plus |
| deltaCOP-RB | 2167 | CG14813-RB | 194..1127 | 17..953 | 4615 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:06:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1860686..1861099 | 696..283 | 2070 | 100 | Minus |
| X | 23542271 | X | 1861156..1861381 | 283..58 | 1130 | 100 | Minus |
| X | 23542271 | X | 1860427..1860624 | 894..697 | 975 | 99.5 | Minus |
| X | 23542271 | X | 1860312..1860372 | 953..893 | 305 | 100 | Minus |
| X | 23542271 | X | 1861446..1861486 | 59..19 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:06:58 has no hits.
BO08125.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:38 Download gff for
BO08125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14813-PA | 1..937 | 17..953 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:14 Download gff for
BO08125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14813-PA | 1..937 | 17..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:47:31 Download gff for
BO08125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 189..1132 | 9..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:42:27 Download gff for
BO08125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 187..1130 | 9..953 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:42:27 Download gff for
BO08125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1860312..1860370 | 895..953 | 100 | <- | Minus |
| X | 1860427..1860624 | 697..894 | 99 | <- | Minus |
| X | 1860686..1861098 | 284..696 | 100 | <- | Minus |
| X | 1861156..1861379 | 60..283 | 100 | <- | Minus |
| X | 1861446..1861488 | 16..59 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:47:31 Download gff for
BO08125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1754345..1754403 | 895..953 | 100 | <- | Minus |
| arm_X | 1754460..1754657 | 697..894 | 99 | <- | Minus |
| arm_X | 1754719..1755131 | 284..696 | 100 | <- | Minus |
| arm_X | 1755189..1755412 | 60..283 | 100 | <- | Minus |
| arm_X | 1755479..1755521 | 16..59 | 97 | | Minus |
BO08125.complete Sequence
1630 bp (1630 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631065
> BO08125.complete
GAAGTTATCAGTCGACATGGTATTAATTGCTGCGGCTGTCTGCACGAAGA
ATGGCAAAGTGATTCTGTCACGTCAGTTCGTCGAGATGACGAAGGCACGC
ATCGAGGGACTGCTGGCTGCCTTTCCCAAGCTGATGACTGCTGGCAAGCA
GCACACTTACGTGGAGACGGACTCCGTGCGCTACGTCTACCAGCCGATGG
AGAAACTATATATGCTGCTCATCACCACTAAGGCCAGCAACATTCTGGAG
GATCTGGAGACCCTGCGCCTCTTCTCGAAAGTGATTCCCGAGTACAGCCA
CTCGCTCGACGAGAAGGAGATTGTGGAGAATGCCTTCAATCTGATCTTCG
CATTTGACGAGATCGTGGCACTCGGCTACAGGGAGAGCGTCAACTTGGCC
CAGATCAAGACCTTCGTGGAGATGGACTCACATGAGGAGAAGGTCTACCA
GGCAGTGCGTCAGACGCAGGAGCGTGATGCGCGCCAGAAGATGCGCGAGA
AGGCCAAGGAACTGCAGCGGCAGCGCATGGAGGCCAGCAAACGGGGTGGT
CCCTCCCTGGGTGGCATTGGCAGCCGCAGCGGCGGCTTTAGCGCCGACGG
AATTGGCAGTAGCGGCGTGAGCAGCAGTTCCGGTGCCTCCAGCGCCAACA
CCGGCATCACCTCCATCGATGTGGACACCAAATCCAAGGCGGCTGCCAGT
AAACCAGCTTCCCGCAATGCCCTCAAGCTAGGTGGCAAGTCCAAGGACGT
CGATAGTTTCGTGGATCAGCTGAAGAACGAGGGCGAGAAGATTGCCAATC
TGGCACCGGCGGCGCCCGCTGGAGGTTCCAGTGCTGCAGCTAGCGCCAGT
GCAGCGGCCAAGGCAGCTATCGCGTCGGACATTCACAAAGAGAGCGTACA
TCTGAAGATTGAGGACAAGCTAGTAGTGCGTCTGGGACGCGATGGTGGCG
TGCAGCAGTTCGAGAACTCGGGCCTCCTGACGTTGCGCATTACGGACGAG
GCCTACGGACGCATTTTGCTGAAGCTGTCTCCCAACCACACACAGGGCCT
GCAGTTGCAGACCCACCCCAACGTGGACAAGGAGCTGTTCAAGTCGCGCA
CTACCATCGGACTAAAGAACTTGGGCAAGCCGTTTCCCCTTAACACCGAT
GTGGGTGTGCTCAAGTGGCGCTTCGTCTCGCAGGACGAGTCGGCAGTCCC
GCTGACCATTAACTGCTGGCCATCGGATAATGGAGAGGGTGGATGCGATG
TTAACATTGAGTATGAACTGGAGGCGCAGCAGCTAGAGCTGCAGGACGTG
GCCATTGTCATTCCCTTGCCAATGAATGTGCAGCCTTCGGTGGCGGAGTA
CGACGGCACCTACAACTACGATTCACGCAAGCATGTGCTCCAGTGGCACA
TTCCAATAATCGATGCCGCCAACAAGTCCGGTTCTATGGAGTTCAGCTGC
AGTGCCTCCATTCCCGGTGACTTCTTCCCCTTGCAGGTGTCCTTCGTCTC
GAAAACGCCGTATGCGGGCGTCGTGGCCCAGGATGTGGTGCAGGTGGACA
GCGAGGCGGCGGTCAAGTATTCAAGCGAGTCCATTCTGTTCGTGGAAAAG
TACGAGATCGTGGCAAGCTTTCTAGACCAT
BO08125.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| deltaCOP-RA | 1599 | CG14813-PA | 1..1596 | 17..1612 | 7980 | 100 | Plus |
| deltaCOP-RB | 1596 | CG14813-PB | 1..1593 | 17..1612 | 7900 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:59:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| deltaCOP-RA | 2170 | CG14813-RA | 194..1789 | 17..1612 | 7980 | 100 | Plus |
| deltaCOP-RB | 2167 | CG14813-RB | 194..1786 | 17..1612 | 7900 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1860686..1861099 | 696..283 | 2070 | 100 | Minus |
| X | 23542271 | X | 1860053..1860372 | 1212..893 | 1585 | 99.7 | Minus |
| X | 23542271 | X | 1859522..1859813 | 1612..1321 | 1460 | 100 | Minus |
| X | 23542271 | X | 1861156..1861381 | 283..58 | 1130 | 100 | Minus |
| X | 23542271 | X | 1860427..1860624 | 894..697 | 990 | 100 | Minus |
| X | 23542271 | X | 1859871..1859982 | 1320..1209 | 560 | 100 | Minus |
| X | 23542271 | X | 1861446..1861486 | 59..19 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:58:58 has no hits.
BO08125.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:58 Download gff for
BO08125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 1..1599 | 17..1613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:02 Download gff for
BO08125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 189..1796 | 9..1618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:44 Download gff for
BO08125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 196..1791 | 17..1614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:58 Download gff for
BO08125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 189..1796 | 9..1618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:41 Download gff for
BO08125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 194..1789 | 17..1614 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:41 Download gff for
BO08125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1859520..1859813 | 1321..1614 | 99 | <- | Minus |
| X | 1859871..1859982 | 1209..1320 | 100 | <- | Minus |
| X | 1860057..1860370 | 895..1208 | 100 | <- | Minus |
| X | 1860427..1860624 | 697..894 | 100 | <- | Minus |
| X | 1860686..1861098 | 284..696 | 100 | <- | Minus |
| X | 1861156..1861379 | 60..283 | 100 | <- | Minus |
| X | 1861446..1861487 | 17..59 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:44 Download gff for
BO08125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1753553..1753846 | 1321..1614 | 99 | <- | Minus |
| arm_X | 1753904..1754015 | 1209..1320 | 100 | <- | Minus |
| arm_X | 1754090..1754403 | 895..1208 | 100 | <- | Minus |
| arm_X | 1754460..1754657 | 697..894 | 100 | <- | Minus |
| arm_X | 1754719..1755131 | 284..696 | 100 | <- | Minus |
| arm_X | 1755189..1755412 | 60..283 | 100 | <- | Minus |
| arm_X | 1755479..1755520 | 17..59 | 97 | | Minus |
BO08125.pep Sequence
Translation from 16 to 1630
> BO08125.pep
MVLIAAAVCTKNGKVILSRQFVEMTKARIEGLLAAFPKLMTAGKQHTYVE
TDSVRYVYQPMEKLYMLLITTKASNILEDLETLRLFSKVIPEYSHSLDEK
EIVENAFNLIFAFDEIVALGYRESVNLAQIKTFVEMDSHEEKVYQAVRQT
QERDARQKMREKAKELQRQRMEASKRGGPSLGGIGSRSGGFSADGIGSSG
VSSSSGASSANTGITSIDVDTKSKAAASKPASRNALKLGGKSKDVDSFVD
QLKNEGEKIANLAPAAPAGGSSAAASASAAAKAAIASDIHKESVHLKIED
KLVVRLGRDGGVQQFENSGLLTLRITDEAYGRILLKLSPNHTQGLQLQTH
PNVDKELFKSRTTIGLKNLGKPFPLNTDVGVLKWRFVSQDESAVPLTINC
WPSDNGEGGCDVNIEYELEAQQLELQDVAIVIPLPMNVQPSVAEYDGTYN
YDSRKHVLQWHIPIIDAANKSGSMEFSCSASIPGDFFPLQVSFVSKTPYA
GVVAQDVVQVDSEAAVKYSSESILFVEKYEIVASFLDH
BO08125.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| deltaCOP-PA | 532 | CG14813-PA | 1..532 | 1..532 | 2671 | 100 | Plus |
| deltaCOP-PB | 531 | CG14813-PB | 1..531 | 1..532 | 2655 | 99.8 | Plus |
