Clone BO08126 Report

Search the DGRC for BO08126

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:81
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG42724-RF
Protein status:BO08126.pep: validated full length
Sequenced Size:1225

Clone Sequence Records

BO08126.3prime Sequence

976 bp (850 high quality bases) assembled on 2006-01-06

> BO08126.3prime
ATGGTCTAGAAAGCTTGCCTTGTTGCGGCGCGTTGACTCAGATGCTGTGG
GTGGTGGCGGCGGGCCGCGTTTGTTGAGCTCCTCCAAAAAGCCGAGCACA
ATAGTGTTCCTCTCCTCCTCCATGTGATCGAGCACCAAATAGCGCTTGTC
GTTCTTCAAAATGTCCTGAATCTCTTTGAGATGGTTTGGATTTTCCTTGA
TGAGATCGCTGCTCTTGTGAGTAATAAATTTGCACTCTTGCAGGAGTTCC
CGAAGAGAAGTCTTCGCTGTCATCGTTTTATCTTTGATGTAGTCCCGGAA
CTCGCGCTCGCCCTTGTCCGAATTGTATTTTAGGTATCGCGGATCTTCTT
TGATCAGCTTCTTAATCTCTTTCCAAGTGCTAGTAAGCTGAAGAGTGCTA
ATCTCGTCGAGCATTTCGCGGAATCGCTCCCTCTTCTTCTTCATCAGATT
GTCAATGTGCTCGTTGAATTTTCGCTCGCGATCCTCGCGATCAAGGCTTT
CTATTAGTTCCCAGCGATGATCCTTCCGCAATTGTCGCTTGACCTCCTTC
CACGTGAAGTCCGGCGTTCGCACCAGATCTGTCAGCAAAGCGGTAAAGTG
ACCAATGCACTCCTCGCGCATGTGATGCTCGCGCTCCTTGTCCCGATCCC
TCAAATGACCGGCCAGGGTTCGCTGCACCTCCTTCTCTCGTTCCCTTATA
CTCTGCTCTACCCTTAGCTTCTTCTCGCGTTCCTTCTGCTTTTGCTCAGC
CTCGTTCTCCCGTTGGCGAGCCACCTCGCTGTCGTCGCTGCCGGCTCGTT
CTTCCCTTTCTGACTCTTCACGATGTTCACCCTCCTCTGGGGTGGTATCT
CGTTTCTTGCTTTTCTCCGACTTGCTTTTTTCTCCTTGTCTTTATCCTTT
TCTTTGAATGACTTGTGCTCGCGGTCCTTGTCTTTCNAACGGCTGCGTCC
TCGATCCTCCCGACCCTTGTCCTTTT

BO08126.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG31367-PA 1194 CG31367-RA 328..1191 882..19 4320 100 Minus
CG31367-PA 1194 CG31367-RA 233..333 976..876 411 96 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG42724-RK 3589 CG42724-RK 2515..3473 976..19 4729 99.6 Minus
CG42724-RI 4036 CG42724-RI 2962..3920 976..19 4729 99.6 Minus
CG42724-RC 3688 CG42724-RC 2614..3572 976..19 4729 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6362399..6362763 473..837 1825 100 Plus
3R 32079331 3R 6362005..6362335 143..473 1655 100 Plus
3R 32079331 3R 6361788..6361912 19..143 625 100 Plus
3R 32079331 3R 6362837..6362977 837..976 614 97.2 Plus
Blast to na_te.dros performed on 2015-02-13 00:30:12 has no hits.

BO08126.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:39 Download gff for BO08126.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31367-PA 233..1194 18..976 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:16 Download gff for BO08126.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31367-PA 233..1194 18..976 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:33:00 Download gff for BO08126.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42724-RH 622..1580 19..976 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:44:06 Download gff for BO08126.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42724-RC 2614..3572 19..976 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:44:06 Download gff for BO08126.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6362005..6362334 143..472 100 <- Plus
3R 6361788..6361911 19..142 100 <- Plus
3R 6362399..6362763 473..837 100 <- Plus
3R 6362838..6362977 838..976 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:33:00 Download gff for BO08126.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2187510..2187633 19..142 100 <- Plus
arm_3R 2187727..2188056 143..472 100 <- Plus
arm_3R 2188121..2188485 473..837 100 <- Plus
arm_3R 2188560..2188699 838..976 97   Plus

BO08126.5prime Sequence

928 bp (753 high quality bases) assembled on 2006-01-06

> BO08126.5prime
GAAGTTATCAGTCGACATGCTGCGAGAGCGTCACGACATCGAGCGCCACA
CCAGGTGGTACGACATCAAAAAGAAGTTTGAGTCGGATCCACGCTACCGT
ATGGTGGACTCCATGTACCGGGAGGAGTACTTCGAGGATTACCTGCACAT
TATGAAGGAGGAGAAGCGAAAGGAGCGGGAGATGCGTGAGCAACGGGAAC
GGGAGCGACATCGCGAACTTAAATCTGATCGGAAGGAGAAGGACAAGGAA
AAGGACAAGGGTCGGAAGGATCGAGGACGCAGCCGTTCGAAAGACAAGGA
CCGCGAGCACAAGTCATCCAAAGAAAAGGATAAAGACAAGGAGGAAAAAA
GCAAGTCGGAGAAAAGCAAGAAACGAGATACCACCCCAGAGGAGGGTGAA
CATCGTGAAGAGTCAGAAAGGGAAGAACGAGCCGGCAGCGACGACAGCGA
GGTGGCTCGCCAACGGGAGAACGAGGCTGAGCAAAAGCAGAAGGAACGCG
AGAAGAAGCTAAGGGTAGAGCAGAGTATAAGGGAACGAGAGAAGGAGGTG
CAGCGAACCCTGGCCGGTCATTTGAGGGATCGGGACAAGGAGCGCGAGCA
TCACATGCGCGAGGAGTGCATTGGTCACTTTACCGCTTTGCTGACAGATC
TGGTGCGAACGCCGGACTTCACGTGGAAGGAGGTCAAGCGACAATTGCGG
AAGGATCATCGCTGGGAACTAATAGAAAGCCTTGATCGCGAGGATCGCGA
GCGAAAATTCAACGAGCACATTGACAATCTGATGAAGAAGAAGAGGGAGC
GATTCCGCGAAATGCTCGACGAGATTAGCACTCTTCAGCTTACTAGCACT
TGGAAAGAGATAAAGAAGCTGATCAAAGAAGATCCGCGATACCTAAAATA
CAATTCGGACAAGGGCGAGCGCGAGTTC

BO08126.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG31367-PA 1194 CG31367-RA 1..912 17..928 4535 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG42724-RK 3589 CG42724-RK 2283..3194 17..928 4545 99.9 Plus
CG42724-RI 4036 CG42724-RI 2730..3641 17..928 4545 99.9 Plus
CG42724-RC 3688 CG42724-RC 2382..3293 17..928 4545 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6362837..6363209 389..17 1865 100 Minus
3R 32079331 3R 6362399..6362763 753..389 1825 100 Minus
3R 32079331 3R 6362160..6362335 928..753 865 99.4 Minus
3R 32079331 3R 4486966..4487126 14..174 310 79.5 Plus
Blast to na_te.dros performed on 2015-02-12 00:33:57 has no hits.

BO08126.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:40 Download gff for BO08126.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31367-PA 1..912 17..928 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:17 Download gff for BO08126.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31367-PA 1..912 17..928 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:50:22 Download gff for BO08126.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42724-RH 383..1301 8..928 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:11:52 Download gff for BO08126.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42724-RC 2375..3293 8..928 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:11:52 Download gff for BO08126.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6362160..6362334 754..928 99 <- Minus
3R 6362399..6362763 389..753 100 <- Minus
3R 6362838..6363216 8..388 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:50:22 Download gff for BO08126.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2187882..2188056 754..928 99 <- Minus
arm_3R 2188121..2188485 389..753 100 <- Minus
arm_3R 2188560..2188938 8..388 98   Minus

BO08126.complete Sequence

1225 bp (1225 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631066

> BO08126.complete
GAAGTTATCAGTCGACATGCTGCGAGAGCGTCACGACATCGAGCGCCACA
CCAGGTGGTACGACATCAAAAAGAAGTTTGAGTCGGATCCACGCTACCGT
ATGGTGGACTCCATGTACCGGGAGGAGTACTTCGAGGATTACCTGCACAT
TATGAAGGAGGAGAAGCGAAAGGAGCGGGAGATGCGTGAGCAACGGGAAC
GGGAGCGACATCGCGAACTTAAATCTGATCGGAAGGAGAAGGACAAGGAA
AAGGACAAGGGTCGGAAGGATCGAGGACGCAGCCGTTCGAAAGACAAGGA
CCGCGAGCACAAGTCATCCAAAGAAAAGGATAAAGACAAGGAGGAAAAAA
GCAAGTCGGAGAAAAGCAAGAAACGAGATACCACCCCAGAGGAGGGTGAA
CATCGTGAAGAGTCAGAAAGGGAAGAACGAGCCGGCAGCGACGACAGCGA
GGTGGCTCGCCAACGGGAGAACGAGGCTGAGCAAAAGCAGAAGGAACGCG
AGAAGAAGCTAAGGGTAGAGCAGAGTATAAGGGAACGAGAGAAGGAGGTG
CAGCGAACCCTGGCCGGTCATTTGAGGGATCGGGACAAGGAGCGCGAGCA
TCACATGCGCGAGGAGTGCATTGGTCACTTTACCGCTTTGCTGACAGATC
TGGTGCGAACGCCGGACTTCACGTGGAAGGAGGTCAAGCGACAATTGCGG
AAGGATCATCGCTGGGAACTAATAGAAAGCCTTGATCGCGAGGATCGCGA
GCGAAAATTCAACGAGCACATTGACAATCTGATGAAGAAGAAGAGGGAGC
GATTCCGCGAAATGCTCGACGAGATTAGCACTCTTCAGCTTACTAGCACT
TGGAAAGAGATTAAGAAGCTGATCAAAGAAGATCCGCGATACCTAAAATA
CAATTCGGACAAGGGCGAGCGCGAGTTCCGGGACTACATCAAAGATAAAA
CGATGACAGCGAAGACTTCTCTTCGGGAACTCCTGCAAGAGTGCAAATTT
ATTACTCACAAGAGCAGCGATCTCATCAAGGAAAATCCAAACCATCTCAA
AGAGATTCAGGACATTTTGAAGAACGACAAGCGCTATTTGGTGCTCGATC
ACATGGAGGAGGAGAGGAACACTATTGTGCTCGGCTTTTTGGAGGAGCTC
AACAAACGCGGCCCGCCGCCACCACCCACAGCATCTGAGTCAACGCGCCG
CAACAAGGCAAGCTTTCTAGACCAT

BO08126.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG42724-RK 3372 CG42724-PK 2179..3369 17..1207 5955 100 Plus
CG42724-RC 3372 CG42724-PC 2179..3369 17..1207 5955 100 Plus
Fip1-RA 2106 CG1078-PA 1609..1769 14..174 310 79.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG42724-RK 3589 CG42724-RK 2283..3473 17..1207 5955 100 Plus
CG42724-RI 4036 CG42724-RI 2730..3920 17..1207 5955 100 Plus
CG42724-RC 3688 CG42724-RC 2382..3572 17..1207 5955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6362837..6363209 389..17 1865 100 Minus
3R 32079331 3R 6362399..6362763 753..389 1825 100 Minus
3R 32079331 3R 6362005..6362335 1083..753 1655 100 Minus
3R 32079331 3R 6361788..6361912 1207..1083 625 100 Minus
3R 32079331 3R 4486966..4487126 14..174 310 79.5 Plus
Blast to na_te.dros performed on 2014-11-27 16:08:05 has no hits.

BO08126.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:59 Download gff for BO08126.complete
Subject Subject Range Query Range Percent Splice Strand
CG31367-RA 1..1194 17..1208 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:04 Download gff for BO08126.complete
Subject Subject Range Query Range Percent Splice Strand
CG31367-RA 912..2109 8..1207 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:05 Download gff for BO08126.complete
Subject Subject Range Query Range Percent Splice Strand
CG42724-RH 390..1580 17..1209 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:59 Download gff for BO08126.complete
Subject Subject Range Query Range Percent Splice Strand
CG31367-RA 912..2109 8..1207 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:34 Download gff for BO08126.complete
Subject Subject Range Query Range Percent Splice Strand
CG42724-RC 2382..3572 17..1209 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:34 Download gff for BO08126.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6361786..6361911 1084..1209 98 <- Minus
3R 6362005..6362334 754..1083 100 <- Minus
3R 6362399..6362763 389..753 100 <- Minus
3R 6362838..6363209 17..388 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:05 Download gff for BO08126.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2188121..2188485 389..753 100 <- Minus
arm_3R 2187508..2187633 1084..1209 98 <- Minus
arm_3R 2187727..2188056 754..1083 100 <- Minus
arm_3R 2188560..2188931 17..388 100   Minus

BO08126.pep Sequence

Translation from 16 to 1225

> BO08126.pep
MLRERHDIERHTRWYDIKKKFESDPRYRMVDSMYREEYFEDYLHIMKEEK
RKEREMREQRERERHRELKSDRKEKDKEKDKGRKDRGRSRSKDKDREHKS
SKEKDKDKEEKSKSEKSKKRDTTPEEGEHREESEREERAGSDDSEVARQR
ENEAEQKQKEREKKLRVEQSIREREKEVQRTLAGHLRDRDKEREHHMREE
CIGHFTALLTDLVRTPDFTWKEVKRQLRKDHRWELIESLDREDRERKFNE
HIDNLMKKKRERFREMLDEISTLQLTSTWKEIKKLIKEDPRYLKYNSDKG
EREFRDYIKDKTMTAKTSLRELLQECKFITHKSSDLIKENPNHLKEIQDI
LKNDKRYLVLDHMEEERNTIVLGFLEELNKRGPPPPPTASESTRRNKASF
LDH

BO08126.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG42724-PK 1123 CG42724-PK 727..1123 1..397 2078 100 Plus
CG42724-PC 1123 CG42724-PC 727..1123 1..397 2078 100 Plus
Fip1-PA 701 CG1078-PA 538..697 1..164 441 52.7 Plus
rudhira-PE 2075 CG43154-PE 1365..1653 47..345 262 28.3 Plus
rudhira-PC 2075 CG43154-PC 1365..1653 47..345 262 28.3 Plus
rudhira-PE 2075 CG43154-PE 1349..1683 18..349 254 24.9 Plus
rudhira-PE 2075 CG43154-PE 1396..1670 2..282 217 26 Plus
rudhira-PE 2075 CG43154-PE 1315..1635 43..352 206 26.3 Plus