Clone Sequence Records
BO08126.3prime Sequence
976 bp (850 high quality bases) assembled on 2006-01-06
> BO08126.3prime
ATGGTCTAGAAAGCTTGCCTTGTTGCGGCGCGTTGACTCAGATGCTGTGG
GTGGTGGCGGCGGGCCGCGTTTGTTGAGCTCCTCCAAAAAGCCGAGCACA
ATAGTGTTCCTCTCCTCCTCCATGTGATCGAGCACCAAATAGCGCTTGTC
GTTCTTCAAAATGTCCTGAATCTCTTTGAGATGGTTTGGATTTTCCTTGA
TGAGATCGCTGCTCTTGTGAGTAATAAATTTGCACTCTTGCAGGAGTTCC
CGAAGAGAAGTCTTCGCTGTCATCGTTTTATCTTTGATGTAGTCCCGGAA
CTCGCGCTCGCCCTTGTCCGAATTGTATTTTAGGTATCGCGGATCTTCTT
TGATCAGCTTCTTAATCTCTTTCCAAGTGCTAGTAAGCTGAAGAGTGCTA
ATCTCGTCGAGCATTTCGCGGAATCGCTCCCTCTTCTTCTTCATCAGATT
GTCAATGTGCTCGTTGAATTTTCGCTCGCGATCCTCGCGATCAAGGCTTT
CTATTAGTTCCCAGCGATGATCCTTCCGCAATTGTCGCTTGACCTCCTTC
CACGTGAAGTCCGGCGTTCGCACCAGATCTGTCAGCAAAGCGGTAAAGTG
ACCAATGCACTCCTCGCGCATGTGATGCTCGCGCTCCTTGTCCCGATCCC
TCAAATGACCGGCCAGGGTTCGCTGCACCTCCTTCTCTCGTTCCCTTATA
CTCTGCTCTACCCTTAGCTTCTTCTCGCGTTCCTTCTGCTTTTGCTCAGC
CTCGTTCTCCCGTTGGCGAGCCACCTCGCTGTCGTCGCTGCCGGCTCGTT
CTTCCCTTTCTGACTCTTCACGATGTTCACCCTCCTCTGGGGTGGTATCT
CGTTTCTTGCTTTTCTCCGACTTGCTTTTTTCTCCTTGTCTTTATCCTTT
TCTTTGAATGACTTGTGCTCGCGGTCCTTGTCTTTCNAACGGCTGCGTCC
TCGATCCTCCCGACCCTTGTCCTTTT
BO08126.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31367-PA | 1194 | CG31367-RA | 328..1191 | 882..19 | 4320 | 100 | Minus |
CG31367-PA | 1194 | CG31367-RA | 233..333 | 976..876 | 411 | 96 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:30:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42724-RK | 3589 | CG42724-RK | 2515..3473 | 976..19 | 4729 | 99.6 | Minus |
CG42724-RI | 4036 | CG42724-RI | 2962..3920 | 976..19 | 4729 | 99.6 | Minus |
CG42724-RC | 3688 | CG42724-RC | 2614..3572 | 976..19 | 4729 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:30:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6362399..6362763 | 473..837 | 1825 | 100 | Plus |
3R | 32079331 | 3R | 6362005..6362335 | 143..473 | 1655 | 100 | Plus |
3R | 32079331 | 3R | 6361788..6361912 | 19..143 | 625 | 100 | Plus |
3R | 32079331 | 3R | 6362837..6362977 | 837..976 | 614 | 97.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:30:12 has no hits.
BO08126.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:39 Download gff for
BO08126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31367-PA | 233..1194 | 18..976 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:16 Download gff for
BO08126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31367-PA | 233..1194 | 18..976 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:33:00 Download gff for
BO08126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42724-RH | 622..1580 | 19..976 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:44:06 Download gff for
BO08126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42724-RC | 2614..3572 | 19..976 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:44:06 Download gff for
BO08126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6362005..6362334 | 143..472 | 100 | <- | Plus |
3R | 6361788..6361911 | 19..142 | 100 | <- | Plus |
3R | 6362399..6362763 | 473..837 | 100 | <- | Plus |
3R | 6362838..6362977 | 838..976 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:33:00 Download gff for
BO08126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2187510..2187633 | 19..142 | 100 | <- | Plus |
arm_3R | 2187727..2188056 | 143..472 | 100 | <- | Plus |
arm_3R | 2188121..2188485 | 473..837 | 100 | <- | Plus |
arm_3R | 2188560..2188699 | 838..976 | 97 | | Plus |
BO08126.5prime Sequence
928 bp (753 high quality bases) assembled on 2006-01-06
> BO08126.5prime
GAAGTTATCAGTCGACATGCTGCGAGAGCGTCACGACATCGAGCGCCACA
CCAGGTGGTACGACATCAAAAAGAAGTTTGAGTCGGATCCACGCTACCGT
ATGGTGGACTCCATGTACCGGGAGGAGTACTTCGAGGATTACCTGCACAT
TATGAAGGAGGAGAAGCGAAAGGAGCGGGAGATGCGTGAGCAACGGGAAC
GGGAGCGACATCGCGAACTTAAATCTGATCGGAAGGAGAAGGACAAGGAA
AAGGACAAGGGTCGGAAGGATCGAGGACGCAGCCGTTCGAAAGACAAGGA
CCGCGAGCACAAGTCATCCAAAGAAAAGGATAAAGACAAGGAGGAAAAAA
GCAAGTCGGAGAAAAGCAAGAAACGAGATACCACCCCAGAGGAGGGTGAA
CATCGTGAAGAGTCAGAAAGGGAAGAACGAGCCGGCAGCGACGACAGCGA
GGTGGCTCGCCAACGGGAGAACGAGGCTGAGCAAAAGCAGAAGGAACGCG
AGAAGAAGCTAAGGGTAGAGCAGAGTATAAGGGAACGAGAGAAGGAGGTG
CAGCGAACCCTGGCCGGTCATTTGAGGGATCGGGACAAGGAGCGCGAGCA
TCACATGCGCGAGGAGTGCATTGGTCACTTTACCGCTTTGCTGACAGATC
TGGTGCGAACGCCGGACTTCACGTGGAAGGAGGTCAAGCGACAATTGCGG
AAGGATCATCGCTGGGAACTAATAGAAAGCCTTGATCGCGAGGATCGCGA
GCGAAAATTCAACGAGCACATTGACAATCTGATGAAGAAGAAGAGGGAGC
GATTCCGCGAAATGCTCGACGAGATTAGCACTCTTCAGCTTACTAGCACT
TGGAAAGAGATAAAGAAGCTGATCAAAGAAGATCCGCGATACCTAAAATA
CAATTCGGACAAGGGCGAGCGCGAGTTC
BO08126.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31367-PA | 1194 | CG31367-RA | 1..912 | 17..928 | 4535 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42724-RK | 3589 | CG42724-RK | 2283..3194 | 17..928 | 4545 | 99.9 | Plus |
CG42724-RI | 4036 | CG42724-RI | 2730..3641 | 17..928 | 4545 | 99.9 | Plus |
CG42724-RC | 3688 | CG42724-RC | 2382..3293 | 17..928 | 4545 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:33:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6362837..6363209 | 389..17 | 1865 | 100 | Minus |
3R | 32079331 | 3R | 6362399..6362763 | 753..389 | 1825 | 100 | Minus |
3R | 32079331 | 3R | 6362160..6362335 | 928..753 | 865 | 99.4 | Minus |
3R | 32079331 | 3R | 4486966..4487126 | 14..174 | 310 | 79.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:33:57 has no hits.
BO08126.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:40 Download gff for
BO08126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31367-PA | 1..912 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:17 Download gff for
BO08126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31367-PA | 1..912 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:50:22 Download gff for
BO08126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42724-RH | 383..1301 | 8..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:11:52 Download gff for
BO08126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42724-RC | 2375..3293 | 8..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:11:52 Download gff for
BO08126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6362160..6362334 | 754..928 | 99 | <- | Minus |
3R | 6362399..6362763 | 389..753 | 100 | <- | Minus |
3R | 6362838..6363216 | 8..388 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:50:22 Download gff for
BO08126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2187882..2188056 | 754..928 | 99 | <- | Minus |
arm_3R | 2188121..2188485 | 389..753 | 100 | <- | Minus |
arm_3R | 2188560..2188938 | 8..388 | 98 | | Minus |
BO08126.complete Sequence
1225 bp (1225 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631066
> BO08126.complete
GAAGTTATCAGTCGACATGCTGCGAGAGCGTCACGACATCGAGCGCCACA
CCAGGTGGTACGACATCAAAAAGAAGTTTGAGTCGGATCCACGCTACCGT
ATGGTGGACTCCATGTACCGGGAGGAGTACTTCGAGGATTACCTGCACAT
TATGAAGGAGGAGAAGCGAAAGGAGCGGGAGATGCGTGAGCAACGGGAAC
GGGAGCGACATCGCGAACTTAAATCTGATCGGAAGGAGAAGGACAAGGAA
AAGGACAAGGGTCGGAAGGATCGAGGACGCAGCCGTTCGAAAGACAAGGA
CCGCGAGCACAAGTCATCCAAAGAAAAGGATAAAGACAAGGAGGAAAAAA
GCAAGTCGGAGAAAAGCAAGAAACGAGATACCACCCCAGAGGAGGGTGAA
CATCGTGAAGAGTCAGAAAGGGAAGAACGAGCCGGCAGCGACGACAGCGA
GGTGGCTCGCCAACGGGAGAACGAGGCTGAGCAAAAGCAGAAGGAACGCG
AGAAGAAGCTAAGGGTAGAGCAGAGTATAAGGGAACGAGAGAAGGAGGTG
CAGCGAACCCTGGCCGGTCATTTGAGGGATCGGGACAAGGAGCGCGAGCA
TCACATGCGCGAGGAGTGCATTGGTCACTTTACCGCTTTGCTGACAGATC
TGGTGCGAACGCCGGACTTCACGTGGAAGGAGGTCAAGCGACAATTGCGG
AAGGATCATCGCTGGGAACTAATAGAAAGCCTTGATCGCGAGGATCGCGA
GCGAAAATTCAACGAGCACATTGACAATCTGATGAAGAAGAAGAGGGAGC
GATTCCGCGAAATGCTCGACGAGATTAGCACTCTTCAGCTTACTAGCACT
TGGAAAGAGATTAAGAAGCTGATCAAAGAAGATCCGCGATACCTAAAATA
CAATTCGGACAAGGGCGAGCGCGAGTTCCGGGACTACATCAAAGATAAAA
CGATGACAGCGAAGACTTCTCTTCGGGAACTCCTGCAAGAGTGCAAATTT
ATTACTCACAAGAGCAGCGATCTCATCAAGGAAAATCCAAACCATCTCAA
AGAGATTCAGGACATTTTGAAGAACGACAAGCGCTATTTGGTGCTCGATC
ACATGGAGGAGGAGAGGAACACTATTGTGCTCGGCTTTTTGGAGGAGCTC
AACAAACGCGGCCCGCCGCCACCACCCACAGCATCTGAGTCAACGCGCCG
CAACAAGGCAAGCTTTCTAGACCAT
BO08126.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42724-RK | 3372 | CG42724-PK | 2179..3369 | 17..1207 | 5955 | 100 | Plus |
CG42724-RC | 3372 | CG42724-PC | 2179..3369 | 17..1207 | 5955 | 100 | Plus |
Fip1-RA | 2106 | CG1078-PA | 1609..1769 | 14..174 | 310 | 79.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42724-RK | 3589 | CG42724-RK | 2283..3473 | 17..1207 | 5955 | 100 | Plus |
CG42724-RI | 4036 | CG42724-RI | 2730..3920 | 17..1207 | 5955 | 100 | Plus |
CG42724-RC | 3688 | CG42724-RC | 2382..3572 | 17..1207 | 5955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6362837..6363209 | 389..17 | 1865 | 100 | Minus |
3R | 32079331 | 3R | 6362399..6362763 | 753..389 | 1825 | 100 | Minus |
3R | 32079331 | 3R | 6362005..6362335 | 1083..753 | 1655 | 100 | Minus |
3R | 32079331 | 3R | 6361788..6361912 | 1207..1083 | 625 | 100 | Minus |
3R | 32079331 | 3R | 4486966..4487126 | 14..174 | 310 | 79.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:08:05 has no hits.
BO08126.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:59 Download gff for
BO08126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31367-RA | 1..1194 | 17..1208 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:04 Download gff for
BO08126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31367-RA | 912..2109 | 8..1207 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:05 Download gff for
BO08126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42724-RH | 390..1580 | 17..1209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:59 Download gff for
BO08126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31367-RA | 912..2109 | 8..1207 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:34 Download gff for
BO08126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42724-RC | 2382..3572 | 17..1209 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:34 Download gff for
BO08126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6361786..6361911 | 1084..1209 | 98 | <- | Minus |
3R | 6362005..6362334 | 754..1083 | 100 | <- | Minus |
3R | 6362399..6362763 | 389..753 | 100 | <- | Minus |
3R | 6362838..6363209 | 17..388 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:05 Download gff for
BO08126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2188121..2188485 | 389..753 | 100 | <- | Minus |
arm_3R | 2187508..2187633 | 1084..1209 | 98 | <- | Minus |
arm_3R | 2187727..2188056 | 754..1083 | 100 | <- | Minus |
arm_3R | 2188560..2188931 | 17..388 | 100 | | Minus |
BO08126.pep Sequence
Translation from 16 to 1225
> BO08126.pep
MLRERHDIERHTRWYDIKKKFESDPRYRMVDSMYREEYFEDYLHIMKEEK
RKEREMREQRERERHRELKSDRKEKDKEKDKGRKDRGRSRSKDKDREHKS
SKEKDKDKEEKSKSEKSKKRDTTPEEGEHREESEREERAGSDDSEVARQR
ENEAEQKQKEREKKLRVEQSIREREKEVQRTLAGHLRDRDKEREHHMREE
CIGHFTALLTDLVRTPDFTWKEVKRQLRKDHRWELIESLDREDRERKFNE
HIDNLMKKKRERFREMLDEISTLQLTSTWKEIKKLIKEDPRYLKYNSDKG
EREFRDYIKDKTMTAKTSLRELLQECKFITHKSSDLIKENPNHLKEIQDI
LKNDKRYLVLDHMEEERNTIVLGFLEELNKRGPPPPPTASESTRRNKASF
LDH
BO08126.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42724-PK | 1123 | CG42724-PK | 727..1123 | 1..397 | 2078 | 100 | Plus |
CG42724-PC | 1123 | CG42724-PC | 727..1123 | 1..397 | 2078 | 100 | Plus |
Fip1-PA | 701 | CG1078-PA | 538..697 | 1..164 | 441 | 52.7 | Plus |
rudhira-PE | 2075 | CG43154-PE | 1365..1653 | 47..345 | 262 | 28.3 | Plus |
rudhira-PC | 2075 | CG43154-PC | 1365..1653 | 47..345 | 262 | 28.3 | Plus |
rudhira-PE | 2075 | CG43154-PE | 1349..1683 | 18..349 | 254 | 24.9 | Plus |
rudhira-PE | 2075 | CG43154-PE | 1396..1670 | 2..282 | 217 | 26 | Plus |
rudhira-PE | 2075 | CG43154-PE | 1315..1635 | 43..352 | 206 | 26.3 | Plus |