Clone Sequence Records
BO08127.3prime Sequence
941 bp (882 high quality bases) assembled on 2006-01-06
> BO08127.3prime
ATGGTCTAGAAAGCTTGCTAAGTTCGTCGTCTGCACCAGTCCACGCTCCA
GATGGAAGCACTCCAAGACGGCGGCGCCGACGGAGCTGCGTCGAGCCACC
ATGGCGTTGACCACGCTCCACTTGTTTAGCCGCGTATCGTATCGCTCCAC
GGAGTTGAGCGAAGAGCTGCCATCGTTGCCGCCCAAGGCGAAGAGGGCAC
CCTCCACCTCAACCACTTCATGGGTGGATCTTCGCGAGTGCATTGCTGCG
ATGGGTTCCCAGCTGTTCCTGCGCAAACTGAATCGCTCTCCGCTGGACAT
GCACATGGTGCCATCATTACCACCAATGCAATACAGATGCCCGTCGGTGG
AGGCGACGCCGCAGCTGCTCCTGCGTGCCGACATGCTTGGCACCGGTTGC
CAGCGACCCACTCTGGGATCAAACCGCTCCACGCTCGACTGGTAGTTGGT
TGAATCGAAGCCGCCCAGACTGTAGATGCAATTTTCCAGCACAGCCAGTC
GGCAGTACCTTCTCCTTGTGCTCATCGCCGGACAGGAGCTCCAGATGCCT
GTGAGCGGATCATAGCGCTCCATGCTGCTCAGACAGGAGGCGCCATCGTA
ACCGCCACAAACGTAGATCAAGGCATCGTAGGAGCAGATGCCCAGACAGC
TACGTTTCGTACCCATTGGGGTGATGTTGCTCCACTTGTTGGTCAGAGGA
TTGTAGCTCTCCGCCGTGGCCAGATCACTGACTCCATCGTAGCCGCCGAC
CACATACAACTGCTTGTGCAGGGATGTTACTCCGGATCGAGATCGTCGCC
ACAACATTGGTGCCACTGGACTCCAAGAGTTAGAGCGCGGATTGTACACC
TCGCACTCGTTGTGAATGGCGAAAGACTGCCTCCTCCACCGCAAATACGT
AGGGTTTCATGCCCTCCGGACGACGCTCCTGGGTTCGCTGG
BO08127.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15097-PA | 1542 | CG15097-RA | 685..1539 | 873..19 | 4275 | 100 | Minus |
| CG15097-PB | 1854 | CG15097-RB | 997..1851 | 873..19 | 4275 | 100 | Minus |
| CG15097-PA | 1542 | CG15097-RA | 615..670 | 941..886 | 280 | 100 | Minus |
| CG15097-PB | 1854 | CG15097-RB | 927..982 | 941..886 | 280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:38:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15097-RE | 3029 | CG15097-RE | 1330..2254 | 941..19 | 4575 | 99.8 | Minus |
| CG15097-RD | 3029 | CG15097-RD | 1330..2254 | 941..19 | 4575 | 99.8 | Minus |
| CG15097-RC | 3029 | CG15097-RC | 1330..2254 | 941..19 | 4575 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:38:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18823237..18823950 | 230..941 | 3470 | 99.7 | Plus |
| 2R | 25286936 | 2R | 18822963..18823175 | 19..231 | 1065 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:38:19 has no hits.
BO08127.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:41 Download gff for
BO08127.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-PA | 615..1542 | 16..941 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:19 Download gff for
BO08127.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-PB | 927..1854 | 16..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:38:41 Download gff for
BO08127.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RC | 1330..2262 | 11..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:05 Download gff for
BO08127.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RC | 1330..2262 | 11..941 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:05 Download gff for
BO08127.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18822958..18823173 | 17..229 | 98 | <- | Plus |
| 2R | 18823237..18823950 | 230..941 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:38:41 Download gff for
BO08127.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14710463..14710678 | 17..229 | 98 | <- | Plus |
| arm_2R | 14710742..14711455 | 230..941 | 99 | | Plus |
BO08127.5prime Sequence
964 bp (880 high quality bases) assembled on 2006-01-06
> BO08127.5prime
GAAGTTATCAGTCGACATGCTGGAGCGCACTCAGGGATTAGTCCGGCTGC
ACGACGTGGACAGCTCAGCGCTGCGGCAGCTGATCGATTACACCTACACC
GGCGAGATCACGATCACCGAGCAGAACGTACAGGTGCTGCTGCCCGCGTC
CGGACTGCTGCAGATGCACTCGGTGCGGGATGCCTGCTGTAAGTTCTTGC
TGCGCCAGCTGCATCCTTCCAACTGCTTGGGCATACGCAGCTTCGCAGAT
GCCCACTCCTGCAAGGAGCTGCACACGCGGTCGCATAAGTACGCCCTGCA
GAACTTCCAGCAGGTTGTGGGTACCGAGGAGTTCCTGCTGCTGCCGTTCG
AGGAGGTTCGCGAGCTGATCTCCAACAGCCAGCTGAACATCAGCTCCGAG
GAGCGAGTCTTTGCCGCCGTCATCAATTGGGTGAAACATGACCTGCCCAC
ACGAAGACTCCACATTGCCGAGTTGATGTCAAACGTCAGACTGCCGCTGG
TGAGCAGGGATTTCCTCATGAGCTGCGTGGAAACGGAGACCCTCATGCGC
GATGACTCCGAGTGCAAGGAGCTGCTGCTGGAAGCCATGAAGTACCATTT
GCTTCCGGAGCAGCGCAGCATAATGGGCAGCCAGCGAACCCAGGAGCGTC
GTCCGGAGGGCATGAAACCCTACGTATTTGCGGTGGGAGGAGGCAGTCTC
TTCGCCATTCACAACGAGTGCGAGGTGTACAATCCGCGCTCTAACTCTTG
GAGTCCAGTGGCACCAATGTTGTGGCGACGATCTCGATCCGGAGTAACAT
CCCTGCACAAGCAGTTGTATGTGGTCGGCGGCTACGATGGAGTCAGTGAT
CTGGCCACGGCGGAGAGCTACAATCCTCTGACCNACAAGTGGAGCAACAT
CACCCCAATGGGTACGAAACGTAGCTGTCTGGGCATCTGCTCCTACGATG
CCTTGATCTACGTT
BO08127.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:17:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15097-PB | 1854 | CG15097-RB | 309..1260 | 13..964 | 4741 | 99.8 | Plus |
| CG15097-PA | 1542 | CG15097-RA | 1..948 | 17..964 | 4721 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:30:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15097-RA | 2792 | CG15097-RA | 467..1426 | 5..964 | 4759 | 99.7 | Plus |
| CG15097-RE | 3029 | CG15097-RE | 712..1663 | 13..964 | 4749 | 99.9 | Plus |
| CG15097-RD | 3029 | CG15097-RD | 712..1663 | 13..964 | 4749 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:30:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18823617..18824576 | 964..5 | 4759 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:30:54 has no hits.
BO08127.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:42 Download gff for
BO08127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-PB | 300..1260 | 4..964 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:20 Download gff for
BO08127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-PB | 300..1260 | 4..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:33:04 Download gff for
BO08127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RA | 463..1426 | 1..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:44:12 Download gff for
BO08127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RA | 463..1426 | 1..964 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:44:12 Download gff for
BO08127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18823617..18824578 | 1..964 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:33:04 Download gff for
BO08127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14711122..14712083 | 1..964 | 99 | | Minus |
BO08127.complete Sequence
1573 bp (1573 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631067
> BO08127.complete
GAAGTTATCAGTCGACATGCTGGAGCGCACTCAGGGATTAGTCCGGCTGC
ACGACGTGGACAGCTCAGCGCTGCGGCAGCTGATCGATTACACCTACACC
GGCGAGATCACGATCACCGAGCAGAACGTACAGGTGCTGCTGCCCGCGTC
CGGACTGCTGCAGATGCACTCGGTGCGGGATGCCTGCTGTAAGTTCTTGC
TGCGCCAGCTGCATCCTTCCAACTGCTTGGGCATACGCAGCTTCGCAGAT
GCCCACTCCTGCAAGGAGCTGCACACGCGGTCGCATAAGTACGCCCTGCA
GAACTTCCAGCAGGTTGTGGGTACCGAGGAGTTCCTGCTGCTGCCGTTCG
AGGAGGTTCGCGAGCTGATCTCCAACAGCCAGCTGAACATCAGCTCCGAG
GAGCGAGTCTTTGCCGCCGTCATCAATTGGGTGAAACATGACCTGCCCAC
ACGAAGACTCCACATTGCCGAGTTGATGTCAAACGTCAGACTGCCGCTGG
TGAGCAGGGATTTCCTCATGAGCTGCGTGGAAACGGAGACCCTCATGCGC
GATGACTCCGAGTGCAAGGAGCTGCTGCTGGAAGCCATGAAGTACCATTT
GCTTCCGGAGCAGCGCAGCATAATGGGCAGCCAGCGAACCCAGGAGCGTC
GTCCGGAGGGCATGAAACCCTACGTATTTGCGGTGGGAGGAGGCAGTCTC
TTCGCCATTCACAACGAGTGCGAGGTGTACAATCCGCGCTCTAACTCTTG
GAGTCCAGTGGCACCAATGTTGTGGCGACGATCTCGATCCGGAGTAACAT
CCCTGCACAAGCAGTTGTATGTGGTCGGCGGCTACGATGGAGTCAGTGAT
CTGGCCACGGCGGAGAGCTACAATCCTCTGACCAACAAGTGGAGCAACAT
CACCCCAATGGGTACGAAACGTAGCTGTCTGGGCATCTGCTCCTACGATG
CCTTGATCTACGTTTGTGGCGGTTACGATGGCGCCTCCTGTCTGAGCAGC
ATGGAGCGCTATGATCCGCTCACAGGCATCTGGAGCTCCTGTCCGGCGAT
GAGCACAAGGAGAAGGTACTGCCGACTGGCTGTGCTGGAAAATTGCATCT
ACAGTCTGGGCGGCTTCGATTCAACCAACTACCAGTCGAGCGTGGAGCGG
TTTGATCCCAGAGTGGGTCGCTGGCAACCGGTGCCAAGCATGTCGGCACG
CAGGAGCAGCTGCGGCGTCGCCTCCACCGACGGGCATCTGTATTGCATTG
GTGGTAATGATGGCACCATGTGCATGTCCAGCGGAGAGCGATTCAGTTTG
CGCAGGAACAGCTGGGAACCCATCGCAGCAATGCACTCGCGAAGATCCAC
CCATGAAGTGGTTGAGGTGGAGGGTGCCCTCTTCGCCTTGGGCGGCAACG
ATGGCAGCTCTTCGCTCAACTCCGTGGAGCGATACGATACGCGGCTAAAC
AAGTGGAGCGTGGTCAACGCCATGGTGGCTCGACGCAGCTCCGTCGGCGC
CGCCGTCTTGGAGTGCTTCCATCTGGAGCGTGGACTGGTGCAGACGACGA
ACTTAGCAAGCTTTCTAGACCAT
BO08127.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:54:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15097-RE | 2232 | CG15097-PE | 309..1851 | 13..1555 | 7715 | 100 | Plus |
| CG15097-RD | 2205 | CG15097-PD | 309..1851 | 13..1555 | 7715 | 100 | Plus |
| CG15097-RC | 1854 | CG15097-PC | 309..1851 | 13..1555 | 7715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:54:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15097-RA | 2792 | CG15097-RA | 467..2017 | 5..1555 | 7725 | 99.9 | Plus |
| CG15097-RE | 3029 | CG15097-RE | 712..2254 | 13..1555 | 7715 | 100 | Plus |
| CG15097-RD | 3029 | CG15097-RD | 712..2254 | 13..1555 | 7715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:54:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18823237..18824576 | 1344..5 | 6670 | 99.9 | Minus |
| 2R | 25286936 | 2R | 18822963..18823175 | 1555..1343 | 1065 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:54:54 has no hits.
BO08127.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:00 Download gff for
BO08127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RB | 300..1854 | 4..1558 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:34:06 Download gff for
BO08127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RA | 463..2025 | 1..1563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:42 Download gff for
BO08127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RA | 479..2017 | 17..1557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:00 Download gff for
BO08127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RA | 463..2025 | 1..1563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:16 Download gff for
BO08127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RA | 479..2017 | 17..1557 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:16 Download gff for
BO08127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18822959..18823173 | 1345..1557 | 99 | <- | Minus |
| 2R | 18823237..18824564 | 17..1344 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:42 Download gff for
BO08127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14710464..14710678 | 1345..1557 | 99 | <- | Minus |
| arm_2R | 14710742..14712069 | 17..1344 | 100 | | Minus |
BO08127.pep Sequence
Translation from 16 to 1573
> BO08127.pep
MLERTQGLVRLHDVDSSALRQLIDYTYTGEITITEQNVQVLLPASGLLQM
HSVRDACCKFLLRQLHPSNCLGIRSFADAHSCKELHTRSHKYALQNFQQV
VGTEEFLLLPFEEVRELISNSQLNISSEERVFAAVINWVKHDLPTRRLHI
AELMSNVRLPLVSRDFLMSCVETETLMRDDSECKELLLEAMKYHLLPEQR
SIMGSQRTQERRPEGMKPYVFAVGGGSLFAIHNECEVYNPRSNSWSPVAP
MLWRRSRSGVTSLHKQLYVVGGYDGVSDLATAESYNPLTNKWSNITPMGT
KRSCLGICSYDALIYVCGGYDGASCLSSMERYDPLTGIWSSCPAMSTRRR
YCRLAVLENCIYSLGGFDSTNYQSSVERFDPRVGRWQPVPSMSARRSSCG
VASTDGHLYCIGGNDGTMCMSSGERFSLRRNSWEPIAAMHSRRSTHEVVE
VEGALFALGGNDGSSSLNSVERYDTRLNKWSVVNAMVARRSSVGAAVLEC
FHLERGLVQTTNLASFLDH
BO08127.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:44:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15097-PE | 743 | CG15097-PE | 105..617 | 1..513 | 2698 | 100 | Plus |
| CG15097-PD | 734 | CG15097-PD | 105..617 | 1..513 | 2698 | 100 | Plus |
| CG15097-PC | 617 | CG15097-PC | 105..617 | 1..513 | 2698 | 100 | Plus |
| CG15097-PA | 513 | CG15097-PA | 1..513 | 1..513 | 2698 | 100 | Plus |
| dbo-PB | 620 | CG6224-PB | 107..603 | 3..498 | 1085 | 43.5 | Plus |
| CG15097-PE | 743 | CG15097-PE | 324..481 | 361..518 | 231 | 33.5 | Plus |
| CG15097-PD | 734 | CG15097-PD | 324..481 | 361..518 | 231 | 33.5 | Plus |
| CG15097-PC | 617 | CG15097-PC | 324..481 | 361..518 | 231 | 33.5 | Plus |
| CG15097-PA | 513 | CG15097-PA | 220..377 | 361..518 | 231 | 33.5 | Plus |
