Clone Sequence Records
BO08137.3prime Sequence
886 bp (845 high quality bases) assembled on 2006-01-06
> BO08137.3prime
ATGGTCTAGAAAGCTTGCGTCGCAGTCATAGCGGGTGCACTTCTCAAAGG
CTCCAAGACCCTGCGGCTGGGGCTTCTTGCGACGGCGCTCGTACAGCAGC
TTCTTCTCGGCGGCGCACATGAGCCGACGCTTGATGTGATTGTCCATCTC
GAAGTCCAAGTCGGCCGGCTTGGCCAGCTCGTTGGGATCCCTTGTGGCTG
CCGAGTCCAGCGCCTTAATGATCAAACTGAGCAGCGCGTGCGCGAGGCGA
TGGCACACATCGTACTCGATGGCATCCTGGCTGGTGTAGTAGATGGCCGA
CTGTGAGGTGGGCTGCACACCAATGGCCAACAGGATGTTGCAGAAGATGC
CGCGCTGCATGCGCGCATACGGATCCACCAGCTGCGGCGGAATGCGCATC
GTTGTGGCCAGATGGGAAATGAATTTGGCGAACTTCTTGATGAGCACGTT
CAGGTACTGGGTGCGGCACTGGCGCTCCAGCTTGGTCAGCATGTTGTAGT
ACAGTTCCTGCTTGCGCTTCAGGAAATCCTCCTTCTTTCGCTCCTTGGTC
TTGTTGCTCTTAAGGATCTGCTCCAGCTGTTCCGTGGTAATGGCTTTGTA
TTTGCCCAGCATGCGCTTGATCCGCTTGGCCCGCAGCTTCGGATCGTATA
CATCCTTGAACTGCTCGTAGTTGTCGATGAGCGTGTGCAACTTGGGCTTG
GACAGGGCCACGTCGTAGGGCTTTACCTTGGGCGGCAGTGTCGGCTGGTA
GGCCATGCGCCGCACATACAACTCCAGCTTGTCCAGTTCCTCCTCCCGCC
GCTTCTTTACGTTCTCCTCTGCGCACACATCCGGATCCTCCTCCTCGGGC
AGCGACTCCGTCGACGTGGGCATCGGCTCATCCAAT
BO08137.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15892-PA | 894 | CG15892-RA | 27..891 | 883..19 | 4325 | 100 | Minus |
CG15892-PB | 894 | CG15892-RB | 27..891 | 883..19 | 4325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:06:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15892-RA | 1173 | CG15892-RA | 232..1096 | 883..19 | 4325 | 100 | Minus |
CG15896-RB | 2809 | CG15896-RB | 1815..2376 | 19..580 | 2810 | 100 | Plus |
CG15896-RB | 2809 | CG15896-RB | 2442..2744 | 581..883 | 1515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:06:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6293183..6293744 | 19..580 | 2810 | 100 | Plus |
X | 23542271 | X | 6293810..6294112 | 581..883 | 1515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:06:02 has no hits.
BO08137.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:38:59 Download gff for
BO08137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15892-PA | 23..894 | 18..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:49 Download gff for
BO08137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15892-PB | 23..894 | 18..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:10:43 Download gff for
BO08137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15892-RA | 228..1096 | 19..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:22:57 Download gff for
BO08137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15892-RA | 228..1096 | 19..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:22:57 Download gff for
BO08137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6293183..6293744 | 19..580 | 100 | <- | Plus |
X | 6293810..6294116 | 581..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:10:43 Download gff for
BO08137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6187216..6187777 | 19..580 | 100 | <- | Plus |
arm_X | 6187843..6188149 | 581..886 | 99 | | Plus |
BO08137.5prime Sequence
818 bp (750 high quality bases) assembled on 2006-01-06
> BO08137.5prime
GAAGTTATCAGTCGACATGGCCAGCTCCAATGTCTCGGATTGGGATGAGC
CGATGCCCACGTCGACGGAGTCGCTGCCCGAGGAGGAGGATCCGGATGTG
TGCGCAGAGGAGAACGTAAAGAAGCGGCGGGAGGAGGAACTGGACAAGCT
GGAGTTGTATGTGCGGCGCATGGCCTACCAGCCGACACTGCCGCCCAAGG
TAAAGCCCTACGACGTGGCCCTGTCCAAGCCCAAGTTGCACACGCTCATC
GACAACTACGAGCAGTTCAAGGATGTATACGATCCGAAGCTGCGGGCCAA
GCGGATCAAGCGCATGCTGGGCAAATACAAAGCCATTACCACGGAACAGC
TGGAGCAGATCCTTAAGAGCAACAAGACCAAGGAGCGAAAGAAGGAGGAT
TTCCTGAAGCGCAAGCAGGAACTGTACTACAACATGCTGACCAAGCTGGA
GCGCCAGTGCCGCACCCAGTACCTGAACGTGCTCATCAAGAAGTTCGCCA
AATTCATTTCCCATCTGGCCACAACGATGCGCATTCCGCCGCAGCTGGTG
GATCCGTATGCGCGCATGCAGCGCGGCATCTTCTGCAACATCCTGTTGGC
CATTGGTGTGCAGCCCACCTCACAGTCGGCCATCTACTACACCAGCCAGG
ATGCCATCGAGTACGATGTGTGCCATCGCCTCGCGCACGCGCTGCTCAGT
TTGATCATTAAGGCGCTGGACTCGGCAGCCACAAGGGATCCCAACGAGCT
GGCCAAGCCGGCCGACTTGGACTTCGAGATGGACAATCACATCAAGCGTC
GGCTCATGTGCGCCGCCG
BO08137.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15892-PA | 894 | CG15892-RA | 1..802 | 17..818 | 4010 | 100 | Plus |
CG15892-PB | 894 | CG15892-RB | 1..802 | 17..818 | 4010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:38:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15892-RA | 1173 | CG15892-RA | 205..1007 | 16..818 | 4015 | 100 | Plus |
CG15896-RB | 2809 | CG15896-RB | 1904..2376 | 818..346 | 2365 | 100 | Minus |
CG15896-RB | 2809 | CG15896-RB | 2442..2771 | 345..16 | 1650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6293272..6293744 | 818..346 | 2365 | 100 | Minus |
X | 23542271 | X | 6293810..6294139 | 345..16 | 1650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:38:38 has no hits.
BO08137.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:39:00 Download gff for
BO08137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15892-PA | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:50 Download gff for
BO08137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15892-PB | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:38:47 Download gff for
BO08137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15892-RA | 200..1007 | 8..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:52 Download gff for
BO08137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15892-RA | 200..1007 | 8..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:52 Download gff for
BO08137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6293272..6293744 | 346..818 | 100 | <- | Minus |
X | 6293810..6294144 | 8..345 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:38:47 Download gff for
BO08137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6187305..6187777 | 346..818 | 100 | <- | Minus |
arm_X | 6187843..6188177 | 8..345 | 99 | | Minus |
BO08137.complete Sequence
925 bp (925 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631070
> BO08137.complete
GAAGTTATCAGTCGACATGGCCAGCTCCAATGTCTCGGATTGGGATGAGC
CGATGCCCACGTCGACGGAGTCGCTGCCCGAGGAGGAGGATCCGGATGTG
TGCGCAGAGGAGAACGTAAAGAAGCGGCGGGAGGAGGAACTGGACAAGCT
GGAGTTGTATGTGCGGCGCATGGCCTACCAGCCGACACTGCCGCCCAAGG
TAAAGCCCTACGACGTGGCCCTGTCCAAGCCCAAGTTGCACACGCTCATC
GACAACTACGAGCAGTTCAAGGATGTATACGATCCGAAGCTGCGGGCCAA
GCGGATCAAGCGCATGCTGGGCAAATACAAAGCCATTACCACGGAACAGC
TGGAGCAGATCCTTAAGAGCAACAAGACCAAGGAGCGAAAGAAGGAGGAT
TTCCTGAAGCGCAAGCAGGAACTGTACTACAACATGCTGACCAAGCTGGA
GCGCCAGTGCCGCACCCAGTACCTGAACGTGCTCATCAAGAAGTTCGCCA
AATTCATTTCCCATCTGGCCACAACGATGCGCATTCCGCCGCAGCTGGTG
GATCCGTATGCGCGCATGCAGCGCGGCATCTTCTGCAACATCCTGTTGGC
CATTGGTGTGCAGCCCACCTCACAGTCGGCCATCTACTACACCAGCCAGG
ATGCCATCGAGTACGATGTGTGCCATCGCCTCGCGCACGCGCTGCTCAGT
TTGATCATTAAGGCGCTGGACTCGGCAGCCACAAGGGATCCCAACGAGCT
GGCCAAGCCGGCCGACTTGGACTTCGAGATGGACAATCACATCAAGCGTC
GGCTCATGTGCGCCGCCGAGAAGAAGCTGCTGTACGAGCGCCGTCGCAAG
AAGCCCCAGCCGCAGGGTCTTGGAGCCTTTGAGAAGTGCACCCGCTATGA
CTGCGACGCAAGCTTTCTAGACCAT
BO08137.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:04:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15892-RA | 894 | CG15892-PA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15892-RA | 1173 | CG15892-RA | 205..1096 | 16..907 | 4460 | 100 | Plus |
CG15896-RB | 2809 | CG15896-RB | 1815..2376 | 907..346 | 2810 | 100 | Minus |
CG15896-RB | 2809 | CG15896-RB | 2442..2771 | 345..16 | 1650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6293183..6293744 | 907..346 | 2810 | 100 | Minus |
X | 23542271 | X | 6293810..6294139 | 345..16 | 1650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:04:07 has no hits.
BO08137.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:53 Download gff for
BO08137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15892-RB | 1..894 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:55 Download gff for
BO08137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15891-RA | 972..1868 | 8..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:52 Download gff for
BO08137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15892-RA | 206..1096 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:53 Download gff for
BO08137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15891-RA | 972..1868 | 8..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:15 Download gff for
BO08137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15892-RA | 206..1096 | 17..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:15 Download gff for
BO08137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6293810..6294138 | 17..345 | 100 | | Minus |
X | 6293181..6293744 | 346..909 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:52 Download gff for
BO08137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6187843..6188171 | 17..345 | 100 | | Minus |
arm_X | 6187214..6187777 | 346..909 | 99 | <- | Minus |
BO08137.pep Sequence
Translation from 16 to 925
> BO08137.pep
MASSNVSDWDEPMPTSTESLPEEEDPDVCAEENVKKRREEELDKLELYVR
RMAYQPTLPPKVKPYDVALSKPKLHTLIDNYEQFKDVYDPKLRAKRIKRM
LGKYKAITTEQLEQILKSNKTKERKKEDFLKRKQELYYNMLTKLERQCRT
QYLNVLIKKFAKFISHLATTMRIPPQLVDPYARMQRGIFCNILLAIGVQP
TSQSAIYYTSQDAIEYDVCHRLAHALLSLIIKALDSAATRDPNELAKPAD
LDFEMDNHIKRRLMCAAEKKLLYERRRKKPQPQGLGAFEKCTRYDCDASF
LDH
BO08137.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15892-PA | 297 | CG15892-PA | 1..297 | 1..297 | 1547 | 100 | Plus |