Clone BO08140 Report

Search the DGRC for BO08140

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:81
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG5287-RA
Protein status:BO08140.pep: validated full length
Sequenced Size:1261

Clone Sequence Records

BO08140.3prime Sequence

929 bp (775 high quality bases) assembled on 2006-01-06

> BO08140.3prime
ATGGTCTAGAAAGCTTGCCGTTTTCGCATAGAAGTAGTTGGCCAGTGGAT
ATCGTATGGTCAGGGCAATCAGTGTACACAGCACCTGGAATCCCATCAGC
ATCTGGGTGACCACTCGCTCGTGGACAGGTCCGAAAACGACTAGGACAAA
GTTAATGAGCGTAAAGTTGTTGGTCCTAACAACTCCGTCCGCTTTGGTAT
GCCAGCTTATTAGTCGCAAGTTCCGCAGTACTGTGACCATCAGGCGACCC
GGAGCGTTGAGATCCTCCAGGCGAAACTCCGTGGTGCTGATGTGGAGCAG
ATCCGTCTTGCTGTCGTACTTGGGCAGCCGGTGACGCGGACATGGCACAA
AGTGGAACAGCTGCGGCGTGGAGTACAGGAAATTCAGGATCTGCGGCAGG
AAGAAGAGCAGCAGCGTCTTGCTGAAGTGGCCCAGGATTCCAACCACGGC
GAAAGTCATGCCGGCAAAGTAGCAGTAGGTGTCCCCAACAAACACCTGCG
ATGGATATTTGTTGAACTTCCATAGCGCTAGGGTGGTGGCCAGGAAAGGC
AGCATGAAGTAAATGGAGAATATATGCGAATCCACCTGGTGACCGAGCAA
CAGTTCAATGGCATTGAAGACCAGAATGGAGCCTGCAATAATAAAGGATT
GTCCCACCTCCAGGCCATTGATGCCCGCCAGGATGTTGATGGCATTTGTG
CAGAATACCGCCAACATGCCCATGAAGACGTAGTACAAGGCACCTATATT
CAAGGAGGTCCCAATCAGATTCCTTGCAAAGTTGGGCATAATGACCGTCG
TGGAGTTATAGTTTACGTAGTACACCATTAGCAGCGGCAACGTGGCGATG
GTGGGCAACAGGAGCTTGTGGCGCCATCGCAGGTCGAGAACGTCATCGGC
GAAGCCCAAGAAGATCATGCAGCAAATGG

BO08140.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5287-PA 1230 CG5287-RA 317..1227 929..19 4555 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5287-RA 1557 CG5287-RA 548..1458 929..19 4555 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13182907..13183396 508..19 2450 100 Minus
2L 23513712 2L 13180159..13180395 745..509 1185 100 Minus
2L 23513712 2L 13179915..13180102 929..742 940 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:49:48 has no hits.

BO08140.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:39:05 Download gff for BO08140.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5287-PA 317..1230 18..929 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:57 Download gff for BO08140.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5287-PA 317..1230 18..929 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:12:18 Download gff for BO08140.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 548..1462 13..929 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:34 Download gff for BO08140.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 548..1462 13..929 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:34 Download gff for BO08140.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13179915..13180100 744..929 100 -> Minus
2L 13180161..13180395 509..743 100 -> Minus
2L 13182907..13183400 13..508 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:12:18 Download gff for BO08140.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13179915..13180100 744..929 100 -> Minus
arm_2L 13180161..13180395 509..743 100 -> Minus
arm_2L 13182907..13183400 13..508 99   Minus

BO08140.5prime Sequence

910 bp (814 high quality bases) assembled on 2006-01-06

> BO08140.5prime
GAAGTTATCAGTCGACATGTCGGGAGTCGCCATAGCCATCAATGCGGCCA
TTTCGGGCGCCGCCTACTGCATGACAGTCCGGATGATACCCCGCTTCCGC
GAGATGTTCATCAAGGCCAATCTCTTTGGCAACGATCTGTGCAAGAAGGA
CAAGCCGCAGGTACCTGAATCCTTTGGTGTGCTTATTGGCTGTGTGTTCC
TGGTGTCCTTGTTTCTGTTCATACCGATTCCCTTCGCCTTCGACGAGGCA
GCTGCCACGGATGCGATTACTGGAGGCAAACCAGATACCTTTCCACATGA
TAAGTTCGTGGAATTGATTGCCGCCCTTCTTTCCATTTGCTGCATGATCT
TCTTGGGCTTCGCCGATGACGTTCTCGACCTGCGATGGCGCCACAAGCTC
CTGTTGCCCACCATCGCCACGTTGCCGCTGCTAATGGTGTACTACGTAAA
CTATAACTCCACGACGGTCATTATGCCCAACTTTGCAAGGAATCTGATTG
GGACCTCCTTGAATATAGGTGCCTTGTACTACGTCTTCATGGGCATGTTG
GCGGTATTCTGCACAAATGCCATCAACATCCTGGCGGGCATCAATGGCCT
GGAGGTGGGACAATCCTTTATTATTGCAGGCTCCATTCTGGTCTTCAATG
CCATTGAACTGTTGCTCGGTCACCAGGTGGATTCGCATATATTCTCCATT
TACTTCATGCTGCCTTTCCTGGCCACCACCCTAGCGCTATGGAAGTTCAA
CAAATATCCATCGCAGGTGTTTGTTGGGGACACCTACTGCTACTTTGCCG
GCATGACTTTCGCCGTGGTTGGAATCCCTGGGCACTTCAGCAAGACGCTG
CTGCTCTTCTTCCCTGCGCAGATCCTGAATTTCCTGTACTCCACGCCGCA
GCTGTTCCAC

BO08140.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5287-PA 1230 CG5287-RA 1..847 17..863 4160 99.6 Plus
CG5287-PA 1230 CG5287-RA 851..894 867..910 220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5287-RA 1557 CG5287-RA 231..1125 16..910 4385 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13180159..13180395 517..753 1185 100 Plus
2L 23513712 2L 13179885..13180102 303..520 1090 100 Plus
2L 23513712 2L 13179477..13179623 16..162 735 100 Plus
2L 23513712 2L 13179683..13179824 163..304 710 100 Plus
2L 23513712 2L 13182907..13183063 754..910 695 96.2 Plus
Blast to na_te.dros performed on 2015-02-12 04:38:46 has no hits.

BO08140.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:39:06 Download gff for BO08140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5287-PA 1..894 17..910 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:58 Download gff for BO08140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5287-PA 1..894 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:38:50 Download gff for BO08140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 227..1125 13..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:14 Download gff for BO08140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 227..1125 13..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:14 Download gff for BO08140.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13179473..13179623 13..162 99 -> Plus
2L 13179683..13179824 163..304 100 -> Plus
2L 13179887..13180100 305..518 100 -> Plus
2L 13180161..13180395 519..753 100 -> Plus
2L 13182907..13183063 754..910 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:38:50 Download gff for BO08140.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13179473..13179623 13..162 99 -> Plus
arm_2L 13179683..13179824 163..304 100 -> Plus
arm_2L 13179887..13180100 305..518 100 -> Plus
arm_2L 13180161..13180395 519..753 100 -> Plus
arm_2L 13182907..13183063 754..910 97   Plus

BO08140.complete Sequence

1261 bp (1261 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631072

> BO08140.complete
GAAGTTATCAGTCGACATGTCGGGAGTCGCCATAGCCATCAATGCGGCCA
TTTCGGGCGCCGCCTACTGCATGACAGTCCGGATGATACCCCGCTTCCGC
GAGATGTTCATCAAGGCCAATCTCTTTGGCAACGATCTGTGCAAGAAGGA
CAAGCCGCAGGTACCTGAATCCTTTGGTGTGCTTATTGGCTGTGTGTTCC
TGGTGTCCTTGTTTCTGTTCATACCGATTCCCTTCGCCTTCGACGAGGCA
GCTGCCACGGATGCGATTACTGGAGGCAAACCAGATACCTTTCCACATGA
TAAGTTCGTGGAATTGATTGCCGCCCTTCTTTCCATTTGCTGCATGATCT
TCTTGGGCTTCGCCGATGACGTTCTCGACCTGCGATGGCGCCACAAGCTC
CTGTTGCCCACCATCGCCACGTTGCCGCTGCTAATGGTGTACTACGTAAA
CTATAACTCCACGACGGTCATTATGCCCAACTTTGCAAGGAATCTGATTG
GGACCTCCTTGAATATAGGTGCCTTGTACTACGTCTTCATGGGCATGTTG
GCGGTATTCTGCACAAATGCCATCAACATCCTGGCGGGCATCAATGGCCT
GGAGGTGGGACAATCCTTTATTATTGCAGGCTCCATTCTGGTCTTCAATG
CCATTGAACTGTTGCTCGGTCACCAGGTGGATTCGCATATATTCTCCATT
TACTTCATGCTGCCTTTCCTGGCCACCACCCTAGCGCTATGGAAGTTCAA
CAAATATCCATCGCAGGTGTTTGTTGGGGACACCTACTGCTACTTTGCCG
GCATGACTTTCGCCGTGGTTGGAATCCTGGGCCACTTCAGCAAGACGCTG
CTGCTCTTCTTCCTGCCGCAGATCCTGAATTTCCTGTACTCCACGCCGCA
GCTGTTCCACTTTGTGCCATGTCCGCGTCACCGGCTGCCCAAGTACGACA
GCAAGACGGATCTGCTCCACATCAGCACCACGGAGTTTCGCCTGGAGGAT
CTCAACGCTCCGGGTCGCCTGATGGTCACAGTACTGCGGAACTTGCGACT
AATAAGCTGGCATACCAAAGCGGACGGAGTTGTTAGGACCAACAACTTTA
CGCTCATTAACTTTGTCCTAGTCGTTTTCGGACCTGTCCACGAGCGAGTG
GTCACCCAGATGCTGATGGGATTCCAGGTGCTGTGTACACTGATTGCCCT
GACCATACGATATCCACTGGCCAACTACTTCTATGCGAAAACGGCAAGCT
TTCTAGACCAT

BO08140.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5287-RA 1230 CG5287-PA 1..1227 17..1243 6135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5287-RA 1557 CG5287-RA 231..1458 16..1243 6140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13182907..13183396 754..1243 2450 100 Plus
2L 23513712 2L 13180159..13180395 517..753 1185 100 Plus
2L 23513712 2L 13179885..13180102 303..520 1090 100 Plus
2L 23513712 2L 13179477..13179623 16..162 735 100 Plus
2L 23513712 2L 13179683..13179824 163..304 710 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:16:26 has no hits.

BO08140.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:47 Download gff for BO08140.complete
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 1..1230 17..1244 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:50 Download gff for BO08140.complete
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 229..1464 13..1249 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:54 Download gff for BO08140.complete
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 232..1458 17..1245 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:47 Download gff for BO08140.complete
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 229..1464 13..1249 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:30 Download gff for BO08140.complete
Subject Subject Range Query Range Percent Splice Strand
CG5287-RA 232..1458 17..1245 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:30 Download gff for BO08140.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13179478..13179623 17..162 100 -> Plus
2L 13179683..13179824 163..304 100 -> Plus
2L 13179887..13180100 305..518 100 -> Plus
2L 13180161..13180395 519..753 100 -> Plus
2L 13182907..13183396 754..1245 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:54 Download gff for BO08140.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13179478..13179623 17..162 100 -> Plus
arm_2L 13179683..13179824 163..304 100 -> Plus
arm_2L 13179887..13180100 305..518 100 -> Plus
arm_2L 13180161..13180395 519..753 100 -> Plus
arm_2L 13182907..13183396 754..1245 99   Plus

BO08140.pep Sequence

Translation from 16 to 1261

> BO08140.pep
MSGVAIAINAAISGAAYCMTVRMIPRFREMFIKANLFGNDLCKKDKPQVP
ESFGVLIGCVFLVSLFLFIPIPFAFDEAAATDAITGGKPDTFPHDKFVEL
IAALLSICCMIFLGFADDVLDLRWRHKLLLPTIATLPLLMVYYVNYNSTT
VIMPNFARNLIGTSLNIGALYYVFMGMLAVFCTNAINILAGINGLEVGQS
FIIAGSILVFNAIELLLGHQVDSHIFSIYFMLPFLATTLALWKFNKYPSQ
VFVGDTYCYFAGMTFAVVGILGHFSKTLLLFFLPQILNFLYSTPQLFHFV
PCPRHRLPKYDSKTDLLHISTTEFRLEDLNAPGRLMVTVLRNLRLISWHT
KADGVVRTNNFTLINFVLVVFGPVHERVVTQMLMGFQVLCTLIALTIRYP
LANYFYAKTASFLDH

BO08140.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5287-PA 409 CG5287-PA 1..409 1..409 2126 100 Plus