Clone BO08141 Report

Search the DGRC for BO08141

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:81
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG3829-RA
Protein status:BO08141.pep: validated full length
Sequenced Size:1825

Clone Sequence Records

BO08141.3prime Sequence

884 bp (790 high quality bases) assembled on 2006-01-06

> BO08141.3prime
ATGGTCTAGAAAGCTTGCCGTTCCCTGATGGATGCCCCCATCTTGGACGG
GCAGTGGAACGGGCATGTCAATGTGGTGCACAACGATGACGTTCTCACCG
CCGTTCAGCGCCTCCAGCTCAGCGGACGTCTTGCTCTCCTGAAGCTGCTG
CTCTCGCCTGCTGTTCAGGTAATAGACGCCGGCTACGATCAGGCTGAACG
ATGTCACCGATATGAGCAGGGTGCCGTATTTAAGAGTTTGCTGAATGGCA
TTCAGGCCAAAGGTGCTTAAGTACAGCGTGTGGAGCACCTCCTCGGAAAA
GTCTCCCGACGTGATCTCGATCCACATAAGTGGAAGGATGGTAGTGTTCT
TTAATCTATCGCCCTGATTTCTCAATATCGGCGTCTTGTCCAGCATTATG
TTTATCTGGACACGGGACGCGCCGCTAATTGGAAAACCGAATCGAGGATG
GATGTCGGCATAGGTTTGATGCACTGCTGCGTCTGGCTCAATACCCTCAA
AGTCTTGGTACAGCACCGGATCGCCCGTGAAGAAATGTGGGAACGAGGGA
AAAATGGGCGCATCCCCGTAGCACTTGGTGGCGTTGATAACTCCGCTGGG
CAAGCACAGTTCTGTGTTCTGACAATAGCACTGGTTCGCAGGATTTTTGG
ACGGATGGCTGAATACGTCCATTGGCGTCCGGTAGCGCAGAACATCAATG
TCGTTGTAGATGGTAACCTCTTTTTCGAAGTGTAGCGGCACCTTGCGGCA
CAGCACCTGGAGGAATACATTAACTGTGCTGCGATCCTGCAGCAAATGTG
GTGAGAACATAGAAGGCTCGGAGCCGTCGATGCGATTGCACTCATCCCCC
TCCCAGTAGTCCAACTGGGGCATGCCGGTAAACT

BO08141.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3829-PA 1794 CG3829-RA 926..1791 884..19 4305 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3829-RB 2059 CG3829-RB 997..1862 884..19 4315 99.9 Minus
CG3829-RA 3159 CG3829-RA 2097..2962 884..19 4315 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24989368..24989883 884..369 2565 99.8 Minus
2R 25286936 2R 24989943..24990292 368..19 1750 100 Minus
Blast to na_te.dros performed on 2015-02-12 15:46:49 has no hits.

BO08141.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:39:07 Download gff for BO08141.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3829-PA 926..1794 15..884 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:29:59 Download gff for BO08141.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3829-PA 926..1794 15..884 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:09:33 Download gff for BO08141.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3829-RA 2097..2965 15..884 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:15 Download gff for BO08141.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3829-RA 2097..2965 15..884 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:15 Download gff for BO08141.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24989943..24990295 15..368 99   Minus
2R 24989368..24989883 369..884 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:09:33 Download gff for BO08141.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20876891..20877406 369..884 99 -> Minus
arm_2R 20877466..20877818 15..368 99   Minus

BO08141.5prime Sequence

865 bp (790 high quality bases) assembled on 2006-01-06

> BO08141.5prime
GAAGTTATCAGTCGACATGTCACATACCAAAGATGCAGAGATGTCCATGC
CCGCTCGGCAGGAATCTGATCGTACATCGGCCCCATCTGTTACTAAATCC
CTCACTCTGAACTCTACTCGGAGCGGGGTGGGCACGGGAAACTTTGGGGG
CTACGGCATGACGAACGGGGCCGAGAAACCTTCTGTGCTGCACATGATAA
TGGAAGCCTTGGGTCTACGCAATCAGGCTCAAAACCGCGAGCCAACATCC
AAGGATATTGGAACTCTGATAATGCTGGGCGTAATGTTTTTGCTCTTTGT
AATCAGCGTGACCGGATTTTTCGTAATGTGGTTTACCGAATATTACAACA
ACACCATTCTGGAGAACCTGATCCTGGCCGAAAACTCGGATACCGCTAAT
AGTTGGCTTAACCCTGATCCTAAGTACGACACTTTGCTAAAGGCTCACAT
TTTTCACTACCCCAACATCGATGACTACTTAGCAGGGCGGGCAGATAAAA
TAAAGGTCGTGGATGTGGGACCTCTCACCTACCAGGAACACACTGTTAAA
GATGAAGTTTCCTTTAACAAAAATTTCACTGTTAGCTTCAGGGACCGCAA
GTCTTATAAGTTTCTCCCGGAAAAGTCGTCTATTGGGGAACACGAAGTGG
TCAGGGTGCCCAATGTGCCGCTTATCTCTGCCGCCGGACCAGTTAAGCGC
ATGAAGGCTTTCGAACGCTTAGCTGTATCCACTTGGATAAAACAATTCAA
GGAGCCTCTCTTTAAGAATCTCACGGTTTCCGAATATCTCTGGGGTTATG
AGGACAGCATTATCAAGTTAAAATCACTGGGCAGAGGCCGGCGACGGTTT
GGTCTTCTGATGAGC

BO08141.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3829-PA 1794 CG3829-RA 1..849 17..865 4245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3829-RB 2059 CG3829-RB 72..920 17..865 4245 100 Plus
CG3829-RA 3159 CG3829-RA 1172..2020 17..865 4245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24988961..24989234 592..865 1370 100 Plus
2R 25286936 2R 24988215..24988470 17..272 1280 100 Plus
2R 25286936 2R 24988678..24988908 363..593 1155 100 Plus
2R 25286936 2R 24988531..24988622 273..364 460 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:14:09 has no hits.

BO08141.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:39:08 Download gff for BO08141.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3829-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:30:01 Download gff for BO08141.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3829-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:58:15 Download gff for BO08141.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3829-RA 1160..2020 6..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:57:54 Download gff for BO08141.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3829-RA 1160..2020 6..865 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:57:54 Download gff for BO08141.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24988203..24988470 6..272 98 -> Plus
2R 24988531..24988622 273..364 100 -> Plus
2R 24988680..24988907 365..592 100 -> Plus
2R 24988962..24989234 593..865 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:58:15 Download gff for BO08141.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20875726..20875993 6..272 98 -> Plus
arm_2R 20876054..20876145 273..364 100 -> Plus
arm_2R 20876203..20876430 365..592 100 -> Plus
arm_2R 20876485..20876757 593..865 100   Plus

BO08141.complete Sequence

1825 bp (1825 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631073

> BO08141.complete
GAAGTTATCAGTCGACATGTCACATACCAAAGATGCAGAGATGTCCATGC
CCGCTCGGCAGGAATCTGATCGTACATCGGCCCCATCTGTTACTAAATCC
CTCACTCTGAACTCTACTCGGAGCGGGGTGGGCACGGGAAACTTTGGGGG
CTACGGCATGACGAACGGGGCCGAGAAACCTTCTGTGCTGCACATGATAA
TGGAAGCCTTGGGTCTACGCAATCAGGCTCAAAACCGCGAGCCAACATCC
AAGGATATTGGAACTCTGATAATGCTGGGCGTAATGTTTTTGCTCTTTGT
AATCAGCGTGACCGGATTTTTCGTAATGTGGTTTACCGAATATTACAACA
ACACCATTCTGGAGAACCTGATCCTGGCCGAAAACTCGGATACCGCTAAT
AGTTGGCTTAACCCTGATCCTAAGTACGACACTTTGCTAAAGGCTCACAT
TTTTCACTACCCCAACATCGATGACTACTTAGCAGGGCGGGCAGATAAAA
TAAAGGTCGTGGATGTGGGACCTCTCACCTACCAGGAACACACTGTTAAA
GATGAAGTTTCCTTTAACAAAAATTTCACTGTTAGCTTCAGGGACCGCAA
GTCTTATAAGTTTCTCCCGGAAAAGTCGTCTATTGGGGAACACGAAGTGG
TCAGGGTGCCCAATGTGCCGCTTATCTCTGCCGCCGGACCAGTTAAGCGC
ATGAAGGCTTTCGAACGCTTAGCTGTATCCACTTGGATAAAACAATTCAA
GGAGCCTCTCTTTAAGAATCTCACGGTTTCCGAATATCTCTGGGGTTATG
AGGACAGCATTATCAAGTTAAAATCACTGGGCAGAGGCCGGCGACGGTTT
GGTCTTCTGATGAGCCGCAACGGGACTAGCGTGGATTCGGTCCAGCTTAA
TACAGGCGAGGACGACATCACCAAGTTCAGCATCATTACCCAGTTTAACG
GCATGCCCCAGTTGGACTACTGGGAGGGGGATGAGTGCAATCGCATCGAC
GGCTCCGAGCCTTCTATGTTCTCACCACATTTGCTGCAGGATCGCAGCAC
AGTTAATGTATTCCTCCAGGTGCTGTGCCGCAAGGTGCCGCTACACTTCG
AAAAAGAGGTTACCATCTACAACGACATTGATGTTCTGCGCTACCGGACG
CCAATGGACGTATTCAGCCATCCGTCCAAAAATCCTGCGAACCAGTGCTA
TTGTCAGAACACAGAACTGTGCTTGCCCAGCGGAGTTATCAACGCCACCA
AGTGCTACGGGGATGCGCCCATTTTTCCCTCGTTCCCACATTTCTTCACG
GGCGATCCGGTGCTGTACCAAGACTTTGAGGGTATTGAGCCAGACGCAGC
AGTGCATCAAACCTATGCCGACATCCATCCTCGATTCGGTTTTCCAATTA
GCGGCGCGTCCCGTGTCCAGATAAACATAATGCTGGACAAGACGCCGATA
TTGAGAAATCAGGGCGATAGATTAAAGAACACTACCATCCTTCCACTTAT
GTGGATCGAGATCACGTCGGGAGACTTTTCCGAGGAGGTGCTCCACACGC
TGTACTTAAGCACCTTTGGCCTGAATGCCATTCAGCAAACTCTTAAATAC
GGCACCCTGCTCATATCGGTGACATCGTTCAGCCTGATCGTAGCCGGCGT
CTATTACCTGAACAGCAGGCGAGAGCAGCAGCTTCAGGAGAGCAAGACGT
CCGCTGAGCTGGAGGCGCTGAACGGCGGTGAGAACGTCATCGTTGTGCAC
CACATTGACATGCCCGTTCCACTGCCCGTCCAAGATGGGGGCATCCATCA
GGGAACGGCAAGCTTTCTAGACCAT

BO08141.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3829-RB 1794 CG3829-PB 1..1791 17..1807 8955 100 Plus
CG3829-RA 1794 CG3829-PA 1..1791 17..1807 8955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3829-RB 2059 CG3829-RB 72..1862 17..1807 8955 100 Plus
CG3829-RA 3159 CG3829-RA 1172..2962 17..1807 8955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24989292..24989883 866..1457 2960 100 Plus
2R 25286936 2R 24989943..24990292 1458..1807 1750 100 Plus
2R 25286936 2R 24988961..24989234 592..865 1370 100 Plus
2R 25286936 2R 24988215..24988470 17..272 1280 100 Plus
2R 25286936 2R 24988678..24988908 363..593 1155 100 Plus
2R 25286936 2R 24988531..24988622 273..364 460 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:59:33 has no hits.

BO08141.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:18 Download gff for BO08141.complete
Subject Subject Range Query Range Percent Splice Strand
CG3829-RA 1..1794 17..1811 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:50 Download gff for BO08141.complete
Subject Subject Range Query Range Percent Splice Strand
CG3829-RA 1249..3054 6..1811 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:49 Download gff for BO08141.complete
Subject Subject Range Query Range Percent Splice Strand
CG3829-RA 1172..2962 17..1809 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:18 Download gff for BO08141.complete
Subject Subject Range Query Range Percent Splice Strand
CG3829-RA 1249..3054 6..1811 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:19 Download gff for BO08141.complete
Subject Subject Range Query Range Percent Splice Strand
CG3829-RA 1172..2962 17..1809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:19 Download gff for BO08141.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24988215..24988470 17..272 100 -> Plus
2R 24988531..24988622 273..364 100 -> Plus
2R 24988680..24988907 365..592 100 -> Plus
2R 24988962..24989234 593..865 100 -> Plus
2R 24989292..24989883 866..1457 100 -> Plus
2R 24989943..24990292 1458..1809 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:49 Download gff for BO08141.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20875738..20875993 17..272 100 -> Plus
arm_2R 20876054..20876145 273..364 100 -> Plus
arm_2R 20876203..20876430 365..592 100 -> Plus
arm_2R 20876485..20876757 593..865 100 -> Plus
arm_2R 20876815..20877406 866..1457 100 -> Plus
arm_2R 20877466..20877815 1458..1809 99   Plus

BO08141.pep Sequence

Translation from 16 to 1825

> BO08141.pep
MSHTKDAEMSMPARQESDRTSAPSVTKSLTLNSTRSGVGTGNFGGYGMTN
GAEKPSVLHMIMEALGLRNQAQNREPTSKDIGTLIMLGVMFLLFVISVTG
FFVMWFTEYYNNTILENLILAENSDTANSWLNPDPKYDTLLKAHIFHYPN
IDDYLAGRADKIKVVDVGPLTYQEHTVKDEVSFNKNFTVSFRDRKSYKFL
PEKSSIGEHEVVRVPNVPLISAAGPVKRMKAFERLAVSTWIKQFKEPLFK
NLTVSEYLWGYEDSIIKLKSLGRGRRRFGLLMSRNGTSVDSVQLNTGEDD
ITKFSIITQFNGMPQLDYWEGDECNRIDGSEPSMFSPHLLQDRSTVNVFL
QVLCRKVPLHFEKEVTIYNDIDVLRYRTPMDVFSHPSKNPANQCYCQNTE
LCLPSGVINATKCYGDAPIFPSFPHFFTGDPVLYQDFEGIEPDAAVHQTY
ADIHPRFGFPISGASRVQINIMLDKTPILRNQGDRLKNTTILPLMWIEIT
SGDFSEEVLHTLYLSTFGLNAIQQTLKYGTLLISVTSFSLIVAGVYYLNS
RREQQLQESKTSAELEALNGGENVIVVHHIDMPVPLPVQDGGIHQGTASF
LDH

BO08141.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3829-PB 597 CG3829-PB 1..597 1..597 3131 100 Plus
CG3829-PA 597 CG3829-PA 1..597 1..597 3131 100 Plus
emp-PE 508 CG2727-PE 29..495 106..582 597 32.2 Plus
emp-PD 520 CG2727-PD 41..507 106..582 597 32.2 Plus
emp-PA 520 CG2727-PA 41..507 106..582 597 32.2 Plus