Clone BO08143 Report

Search the DGRC for BO08143

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:81
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG42825-RA
Protein status:BO08143.pep: validated not full length
Sequenced Size:1588

Clone Sequence Records

BO08143.3prime Sequence

893 bp (769 high quality bases) assembled on 2006-01-06

> BO08143.3prime
ATGGTCTAGAAAGCTTGCAAAGCGGAAGTTAACGAATTTATTGAACTGCT
CCTGGGCACCTTGCAAGGTCATCCTCCTTGTCTCCGGCAGTGTAAGGACT
CCGAGAATCACTCCCGCCAGGTACATGGCTCCCATGATGTAGAAGTAGTT
GTAGCCTTGTCCAAAATTGAAGTCACAAACATTTATGATGAGGAAGACAA
ATATTTCGGTGATGAAAGTTAAACCGATAAAGTGTTGCTTAACTCCCATG
GGATATGCCTCCGTCAGGTAGGCCGAGTTGGATGAGAAGGCCATACCGGC
AAAGAACTCGAAAATCATTATCAAGACGGTCACTTGGCTCATATACGTAT
ATACATTGTACTGTGAACCCACGGCAAACGACAAGCCGCAGCTTACGAGC
AGGCCAAAGACCGCAGGCTTCTTTCGGCCCAAGGACTCCATGCAAAAGGA
TGGGATTAGGGATCCCAACCAACGGCAAAAGGCTAATCCTATGTACCAGG
AGCTCGCATTTCTTAAATCATTGGAGACTAAGATCGCAACGACATAAGTG
ATGATCACAAAGCTGGAGATGCTCATAGCATTCAGGGCGCGCAGGTATGC
AAGTCGCATGAAGGTGGGCAGCGCTTTGGAAATGCTTTCACTCTTTGACA
TATTCTTGTTGTAGGCCAAGTAGCGTTTGTGCTCCGCCAGAAGCTCGTAA
GTTTCCTCGGTTAGCACCGCAGGCTTTTGTAGCCGACGCAGTGCGTCAAT
GGCCGCCTGTTCTTCGTTATTGGCCAGCATTAGAACCGGCGATTCGATGG
TAAAAAATGAGCCCATAATAAGGGCCAAAACGCCGTAGATTGTGCTCAGC
ACTCTTTTCATATTCTCGGACGTAAAATCATTGTATGTCATAT

BO08143.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6640-PB 1557 CG6640-RB 680..1554 893..19 4350 99.8 Minus
CG6640-PA 2751 CG6640-RA 1874..2748 893..19 4350 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG42825-RA 1752 CG42825-RA 794..1668 893..19 4360 99.9 Minus
CG32054-RA 1775 CG32054-RA 854..1174 867..550 275 73.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10095838..10096712 19..893 4360 99.9 Plus
Blast to na_te.dros performed on 2015-02-12 04:39:06 has no hits.

BO08143.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:39:11 Download gff for BO08143.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6640-PB 680..1557 15..893 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:30:05 Download gff for BO08143.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6640-PA 1874..2751 15..893 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:38:56 Download gff for BO08143.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42825-RA 794..1675 11..893 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:26 Download gff for BO08143.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42825-RA 794..1675 11..893 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:26 Download gff for BO08143.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10095831..10096712 11..893 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:38:56 Download gff for BO08143.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10088931..10089812 11..893 99   Plus

BO08143.5prime Sequence

874 bp (798 high quality bases) assembled on 2006-01-06

> BO08143.5prime
GAAGTTATCAGTCGACATGCAAAACGACAAGTATCCAGCGCCAATAGGCT
TTTATCCACCACAAGGACAGCCGGGATATCCACAACCAGCGTCACAGCCA
GGATACCCTCAGCCAGGGCAGCCGCAACACATCACACCGGCGGAGACATA
CGGACCACAACCACCGCCAATGCCACCGCGGGATCCACACACCAGAGTGG
ATCCACCAGGAGGATGCTTTCAGCGCAACCAAAAGAACAAACCTCAATCC
AATGCTGTGGGCGCAGCTGGTCTCATCTTTATCTCTGGAGGTATGAACAT
AGCGTGGGCGATTGGCTTCCAAGGACCAATCTATTACCAAACCACCAAGC
ACAATTACATTGCCTGGTTCATAGGCGCCATTATTGGAGCTTTGGTTACG
ATGGCGCTGACCAACAAGGTGGCCAAAAAATATATTCTGCAATTTTCTTC
AGTGTTGGTGACCGTCGGTGGATTGGTTATTGCCTGCACCCACAATAATG
GAGCTGGAACCACGGCAGCTTGTTACCTAGATGGTATTGCCAATGGTCTG
GTATTTGCCCCATTTATGGCGTTGGTCGGAGAGATCTCGGTTCCCTATTT
GAGGGGCAAGGCCAGTGCCACCTTGGAGCAATTGTGCTTTGGAACCGGTA
TACTTCTTCAGATCCTTTATGTGTCAAATTGGACATATTCTTCGTATATG
ACATACAATGATTTTACGTCCGAGAATATGAAAGGAGTGCTGAGCACAAT
CTACGGCGTTTTGGCCCTTATTATGGGCTCATTTTTTACCATCGAATCGC
CGGTTCTAATGCTGGCCAATAACGAAGAACAGGCGGCCATTGACGCACTG
CGTCGGCTACAAAGCCTGCGGTGC

BO08143.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6640-PA 2751 CG6640-RA 1194..2041 16..863 4240 100 Plus
CG6640-PB 1557 CG6640-RB 1..847 17..863 4235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG42825-RA 1752 CG42825-RA 114..973 16..874 4275 99.9 Plus
CG32054-RA 1775 CG32054-RA 365..985 233..850 265 70.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10096533..10096969 874..439 2135 99.8 Minus
3L 28110227 3L 10097752..10098002 266..16 1255 100 Minus
3L 28110227 3L 10097030..10097205 439..264 880 100 Minus
3L 28110227 3L 10093558..10093689 850..722 190 78 Minus
Blast to na_te.dros performed on 2015-02-13 07:06:16 has no hits.

BO08143.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:39:12 Download gff for BO08143.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6640-PA 1194..2053 16..874 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:30:06 Download gff for BO08143.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6640-PA 1194..2053 16..874 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:10:52 Download gff for BO08143.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42825-RA 114..973 16..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:23:33 Download gff for BO08143.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42825-RA 114..973 16..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:23:33 Download gff for BO08143.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10096533..10096968 440..874 99 <- Minus
3L 10097030..10097202 267..439 100 <- Minus
3L 10097752..10098002 16..266 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:10:52 Download gff for BO08143.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10089633..10090068 440..874 99 <- Minus
arm_3L 10090130..10090302 267..439 100 <- Minus
arm_3L 10090852..10091102 16..266 100   Minus

BO08143.complete Sequence

1588 bp (1588 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631075

> BO08143.complete
GAAGTTATCAGTCGACATGCAAAACGACAAGTATCCAGCGCCAATAGGCT
TTTATCCACCACAAGGACAGCCGGGATATCCACAACCAGCGTCACAGCCA
GGATACCCTCAGCCAGGGCAGCCGCAACACATCACACCGGCGGAGACATA
CGGACCACAACCACCGCCAATGCCACCGCGGGATCCACACACCAGAGTGG
ATCCACCAGGAGGATGCTTTCAGCGCAACCAAAAGAACAAACCTCAATCC
AATGCTGTGGGCGCAGCTGGTCTCATCTTTATCTCTGGAGGTATGAACAT
AGCGTGGGCGATTGGCTTCCAAGGACCAATCTATTACCAAACCACCAAGC
ACAATTACATTGCCTGGTTCATAGGCGCCATTATTGGAGCTTTGGTTACG
ATGGCGCTGACCAACAAGGTGGCCAAAAAATATATTCTGCAATTTTCTTC
AGTGTTGGTGACCGTCGGTGGATTGGTTATTGCCTGCACCCACAATAATG
GAGCTGGAACCACGGCAGCTTGTTACCTAGATGGTATTGCCAATGGTCTG
GTATTTGCCCCATTTATGGCGTTGGTCGGAGAGATCTCGGTTCCCTATTT
GAGGGGCAAGGCCAGTGCCACCTTGGAGCAATTGTGCTTTGGAACCGGTA
TACTTCTTCAGATCCTTTATGTGTCAAATTGGACATATTCTTCGTATATG
ACATACAATGATTTTACGTCCGAGAATATGAAAGGAGTGCTGAGCACAAT
CTACGGCGTTTTGGCCCTTATTATGGGCTCATTTTTTACCATCGAATCGC
CGGTTCTAATGCTGGCCAATAACGAAGAACAGGCGGCCATTGACGCACTG
CGTCGGCTACAAAAGCCTGCGGTGCTAACCGAGGAAACTTACGAGCTTCT
GGCGGAGCACAAACGCTACTTGGCCTACAACAAGAATATGTCAAAGAGTG
AAAGCATTTCCAAAGCGCTGCCCACCTTCATGCGACTTGCATACCTGCGC
GCCCTGAATGCTATGAGCATCTCCAGCTTTGTGATCATCACTTATGTCGT
TGCGATCTTAGTCTCCAATGATTTAAGAAATGCGAGCTCCTGGTACATAG
GATTAGCCTTTTGCCGTTGGTTGGGATCCCTAATCCCATCCTTTTGCATG
GAGTCCTTGGGCCGAAAGAAGCCTGCGGTCTTTGGCCTGCTCGTAAGCTG
CGGCTTGTCGTTTGCCGTGGGTTCACAGTACAATGTATATACGTATATGA
GCCAAGTGACCGTCTTGATAATGATTTTCGAGTTCTTTGCCGGTATGGCC
TTCTCATCCAACTCGGCCTACCTGACGGAGGCATATCCCATGGGAGTTAA
GCAACACTTTATCGGTTTAACTTTCATCACCGAAATATTTGTCTTCCTCA
TCATAAATGTTTGTGACTTCAATTTTGGACAAGGCTACAACTACTTCTAC
ATCATGGGAGCCATGTACCTGGCGGGAGTGATTCTCGGAGTCCTTACACT
GCCGGAGACAAGGAGGATGACCTTGCAAGGTGCCCAGGAGCAGTTCAATA
AATTCGTTAACTTCCGCTTTGCAAGCTTTCTAGACCAT

BO08143.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG42825-RA 1557 CG42825-PA 1..1554 17..1570 7770 100 Plus
CG32054-RA 1692 CG32054-PA 346..1155 233..1039 295 69.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG42825-RA 1752 CG42825-RA 114..1668 16..1570 7775 100 Plus
CG32054-RA 1775 CG32054-RA 365..1174 233..1039 295 69.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10095838..10096969 1570..439 5660 100 Minus
3L 28110227 3L 10097752..10098002 266..16 1255 100 Minus
3L 28110227 3L 10097030..10097205 439..264 880 100 Minus
3L 28110227 3L 10093369..10093689 1039..722 265 72.9 Minus
Blast to na_te.dros performed on 2014-11-28 00:29:25 has no hits.

BO08143.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:40 Download gff for BO08143.complete
Subject Subject Range Query Range Percent Splice Strand
CG6640-RA 1194..2751 16..1574 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:43 Download gff for BO08143.complete
Subject Subject Range Query Range Percent Splice Strand
CG6640-RA 1194..2755 16..1578 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:16 Download gff for BO08143.complete
Subject Subject Range Query Range Percent Splice Strand
CG42825-RA 115..1668 17..1572 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:40 Download gff for BO08143.complete
Subject Subject Range Query Range Percent Splice Strand
CG6640-RB 79..1640 16..1578 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:22 Download gff for BO08143.complete
Subject Subject Range Query Range Percent Splice Strand
CG42825-RA 115..1668 17..1572 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:22 Download gff for BO08143.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10095836..10096968 440..1572 99 <- Minus
3L 10097030..10097202 267..439 100 <- Minus
3L 10097752..10098001 17..266 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:16 Download gff for BO08143.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10088936..10090068 440..1572 99 <- Minus
arm_3L 10090130..10090302 267..439 100 <- Minus
arm_3L 10090852..10091101 17..266 100   Minus

BO08143.pep Sequence

Translation from 16 to 1588

> BO08143.pep
MQNDKYPAPIGFYPPQGQPGYPQPASQPGYPQPGQPQHITPAETYGPQPP
PMPPRDPHTRVDPPGGCFQRNQKNKPQSNAVGAAGLIFISGGMNIAWAIG
FQGPIYYQTTKHNYIAWFIGAIIGALVTMALTNKVAKKYILQFSSVLVTV
GGLVIACTHNNGAGTTAACYLDGIANGLVFAPFMALVGEISVPYLRGKAS
ATLEQLCFGTGILLQILYVSNWTYSSYMTYNDFTSENMKGVLSTIYGVLA
LIMGSFFTIESPVLMLANNEEQAAIDALRRLQKPAVLTEETYELLAEHKR
YLAYNKNMSKSESISKALPTFMRLAYLRALNAMSISSFVIITYVVAILVS
NDLRNASSWYIGLAFCRWLGSLIPSFCMESLGRKKPAVFGLLVSCGLSFA
VGSQYNVYTYMSQVTVLIMIFEFFAGMAFSSNSAYLTEAYPMGVKQHFIG
LTFITEIFVFLIINVCDFNFGQGYNYFYIMGAMYLAGVILGVLTLPETRR
MTLQGAQEQFNKFVNFRFASFLDH

BO08143.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG42825-PA 518 CG6640-PB 1..518 1..518 2711 100 Plus
CG32054-PA 563 CG32054-PA 1..563 1..518 1514 53.3 Plus
CG32053-PA 496 CG32053-PA 45..492 67..514 783 39 Plus
CG42826-PA 473 CG42826-PA 8..473 53..518 699 34.4 Plus
CG17930-PA 502 CG17930-PA 10..495 22..512 461 29.2 Plus