Clone Sequence Records
BO08143.3prime Sequence
893 bp (769 high quality bases) assembled on 2006-01-06
> BO08143.3prime
ATGGTCTAGAAAGCTTGCAAAGCGGAAGTTAACGAATTTATTGAACTGCT
CCTGGGCACCTTGCAAGGTCATCCTCCTTGTCTCCGGCAGTGTAAGGACT
CCGAGAATCACTCCCGCCAGGTACATGGCTCCCATGATGTAGAAGTAGTT
GTAGCCTTGTCCAAAATTGAAGTCACAAACATTTATGATGAGGAAGACAA
ATATTTCGGTGATGAAAGTTAAACCGATAAAGTGTTGCTTAACTCCCATG
GGATATGCCTCCGTCAGGTAGGCCGAGTTGGATGAGAAGGCCATACCGGC
AAAGAACTCGAAAATCATTATCAAGACGGTCACTTGGCTCATATACGTAT
ATACATTGTACTGTGAACCCACGGCAAACGACAAGCCGCAGCTTACGAGC
AGGCCAAAGACCGCAGGCTTCTTTCGGCCCAAGGACTCCATGCAAAAGGA
TGGGATTAGGGATCCCAACCAACGGCAAAAGGCTAATCCTATGTACCAGG
AGCTCGCATTTCTTAAATCATTGGAGACTAAGATCGCAACGACATAAGTG
ATGATCACAAAGCTGGAGATGCTCATAGCATTCAGGGCGCGCAGGTATGC
AAGTCGCATGAAGGTGGGCAGCGCTTTGGAAATGCTTTCACTCTTTGACA
TATTCTTGTTGTAGGCCAAGTAGCGTTTGTGCTCCGCCAGAAGCTCGTAA
GTTTCCTCGGTTAGCACCGCAGGCTTTTGTAGCCGACGCAGTGCGTCAAT
GGCCGCCTGTTCTTCGTTATTGGCCAGCATTAGAACCGGCGATTCGATGG
TAAAAAATGAGCCCATAATAAGGGCCAAAACGCCGTAGATTGTGCTCAGC
ACTCTTTTCATATTCTCGGACGTAAAATCATTGTATGTCATAT
BO08143.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6640-PB | 1557 | CG6640-RB | 680..1554 | 893..19 | 4350 | 99.8 | Minus |
CG6640-PA | 2751 | CG6640-RA | 1874..2748 | 893..19 | 4350 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:39:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42825-RA | 1752 | CG42825-RA | 794..1668 | 893..19 | 4360 | 99.9 | Minus |
CG32054-RA | 1775 | CG32054-RA | 854..1174 | 867..550 | 275 | 73.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:39:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10095838..10096712 | 19..893 | 4360 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:39:06 has no hits.
BO08143.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:39:11 Download gff for
BO08143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6640-PB | 680..1557 | 15..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:30:05 Download gff for
BO08143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6640-PA | 1874..2751 | 15..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:38:56 Download gff for
BO08143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42825-RA | 794..1675 | 11..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:26 Download gff for
BO08143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42825-RA | 794..1675 | 11..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:26 Download gff for
BO08143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10095831..10096712 | 11..893 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:38:56 Download gff for
BO08143.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10088931..10089812 | 11..893 | 99 | | Plus |
BO08143.5prime Sequence
874 bp (798 high quality bases) assembled on 2006-01-06
> BO08143.5prime
GAAGTTATCAGTCGACATGCAAAACGACAAGTATCCAGCGCCAATAGGCT
TTTATCCACCACAAGGACAGCCGGGATATCCACAACCAGCGTCACAGCCA
GGATACCCTCAGCCAGGGCAGCCGCAACACATCACACCGGCGGAGACATA
CGGACCACAACCACCGCCAATGCCACCGCGGGATCCACACACCAGAGTGG
ATCCACCAGGAGGATGCTTTCAGCGCAACCAAAAGAACAAACCTCAATCC
AATGCTGTGGGCGCAGCTGGTCTCATCTTTATCTCTGGAGGTATGAACAT
AGCGTGGGCGATTGGCTTCCAAGGACCAATCTATTACCAAACCACCAAGC
ACAATTACATTGCCTGGTTCATAGGCGCCATTATTGGAGCTTTGGTTACG
ATGGCGCTGACCAACAAGGTGGCCAAAAAATATATTCTGCAATTTTCTTC
AGTGTTGGTGACCGTCGGTGGATTGGTTATTGCCTGCACCCACAATAATG
GAGCTGGAACCACGGCAGCTTGTTACCTAGATGGTATTGCCAATGGTCTG
GTATTTGCCCCATTTATGGCGTTGGTCGGAGAGATCTCGGTTCCCTATTT
GAGGGGCAAGGCCAGTGCCACCTTGGAGCAATTGTGCTTTGGAACCGGTA
TACTTCTTCAGATCCTTTATGTGTCAAATTGGACATATTCTTCGTATATG
ACATACAATGATTTTACGTCCGAGAATATGAAAGGAGTGCTGAGCACAAT
CTACGGCGTTTTGGCCCTTATTATGGGCTCATTTTTTACCATCGAATCGC
CGGTTCTAATGCTGGCCAATAACGAAGAACAGGCGGCCATTGACGCACTG
CGTCGGCTACAAAGCCTGCGGTGC
BO08143.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6640-PA | 2751 | CG6640-RA | 1194..2041 | 16..863 | 4240 | 100 | Plus |
CG6640-PB | 1557 | CG6640-RB | 1..847 | 17..863 | 4235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42825-RA | 1752 | CG42825-RA | 114..973 | 16..874 | 4275 | 99.9 | Plus |
CG32054-RA | 1775 | CG32054-RA | 365..985 | 233..850 | 265 | 70.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:06:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10096533..10096969 | 874..439 | 2135 | 99.8 | Minus |
3L | 28110227 | 3L | 10097752..10098002 | 266..16 | 1255 | 100 | Minus |
3L | 28110227 | 3L | 10097030..10097205 | 439..264 | 880 | 100 | Minus |
3L | 28110227 | 3L | 10093558..10093689 | 850..722 | 190 | 78 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:06:16 has no hits.
BO08143.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:39:12 Download gff for
BO08143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6640-PA | 1194..2053 | 16..874 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:30:06 Download gff for
BO08143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6640-PA | 1194..2053 | 16..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:10:52 Download gff for
BO08143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42825-RA | 114..973 | 16..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:23:33 Download gff for
BO08143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42825-RA | 114..973 | 16..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:23:33 Download gff for
BO08143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10096533..10096968 | 440..874 | 99 | <- | Minus |
3L | 10097030..10097202 | 267..439 | 100 | <- | Minus |
3L | 10097752..10098002 | 16..266 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:10:52 Download gff for
BO08143.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10089633..10090068 | 440..874 | 99 | <- | Minus |
arm_3L | 10090130..10090302 | 267..439 | 100 | <- | Minus |
arm_3L | 10090852..10091102 | 16..266 | 100 | | Minus |
BO08143.complete Sequence
1588 bp (1588 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631075
> BO08143.complete
GAAGTTATCAGTCGACATGCAAAACGACAAGTATCCAGCGCCAATAGGCT
TTTATCCACCACAAGGACAGCCGGGATATCCACAACCAGCGTCACAGCCA
GGATACCCTCAGCCAGGGCAGCCGCAACACATCACACCGGCGGAGACATA
CGGACCACAACCACCGCCAATGCCACCGCGGGATCCACACACCAGAGTGG
ATCCACCAGGAGGATGCTTTCAGCGCAACCAAAAGAACAAACCTCAATCC
AATGCTGTGGGCGCAGCTGGTCTCATCTTTATCTCTGGAGGTATGAACAT
AGCGTGGGCGATTGGCTTCCAAGGACCAATCTATTACCAAACCACCAAGC
ACAATTACATTGCCTGGTTCATAGGCGCCATTATTGGAGCTTTGGTTACG
ATGGCGCTGACCAACAAGGTGGCCAAAAAATATATTCTGCAATTTTCTTC
AGTGTTGGTGACCGTCGGTGGATTGGTTATTGCCTGCACCCACAATAATG
GAGCTGGAACCACGGCAGCTTGTTACCTAGATGGTATTGCCAATGGTCTG
GTATTTGCCCCATTTATGGCGTTGGTCGGAGAGATCTCGGTTCCCTATTT
GAGGGGCAAGGCCAGTGCCACCTTGGAGCAATTGTGCTTTGGAACCGGTA
TACTTCTTCAGATCCTTTATGTGTCAAATTGGACATATTCTTCGTATATG
ACATACAATGATTTTACGTCCGAGAATATGAAAGGAGTGCTGAGCACAAT
CTACGGCGTTTTGGCCCTTATTATGGGCTCATTTTTTACCATCGAATCGC
CGGTTCTAATGCTGGCCAATAACGAAGAACAGGCGGCCATTGACGCACTG
CGTCGGCTACAAAAGCCTGCGGTGCTAACCGAGGAAACTTACGAGCTTCT
GGCGGAGCACAAACGCTACTTGGCCTACAACAAGAATATGTCAAAGAGTG
AAAGCATTTCCAAAGCGCTGCCCACCTTCATGCGACTTGCATACCTGCGC
GCCCTGAATGCTATGAGCATCTCCAGCTTTGTGATCATCACTTATGTCGT
TGCGATCTTAGTCTCCAATGATTTAAGAAATGCGAGCTCCTGGTACATAG
GATTAGCCTTTTGCCGTTGGTTGGGATCCCTAATCCCATCCTTTTGCATG
GAGTCCTTGGGCCGAAAGAAGCCTGCGGTCTTTGGCCTGCTCGTAAGCTG
CGGCTTGTCGTTTGCCGTGGGTTCACAGTACAATGTATATACGTATATGA
GCCAAGTGACCGTCTTGATAATGATTTTCGAGTTCTTTGCCGGTATGGCC
TTCTCATCCAACTCGGCCTACCTGACGGAGGCATATCCCATGGGAGTTAA
GCAACACTTTATCGGTTTAACTTTCATCACCGAAATATTTGTCTTCCTCA
TCATAAATGTTTGTGACTTCAATTTTGGACAAGGCTACAACTACTTCTAC
ATCATGGGAGCCATGTACCTGGCGGGAGTGATTCTCGGAGTCCTTACACT
GCCGGAGACAAGGAGGATGACCTTGCAAGGTGCCCAGGAGCAGTTCAATA
AATTCGTTAACTTCCGCTTTGCAAGCTTTCTAGACCAT
BO08143.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42825-RA | 1557 | CG42825-PA | 1..1554 | 17..1570 | 7770 | 100 | Plus |
CG32054-RA | 1692 | CG32054-PA | 346..1155 | 233..1039 | 295 | 69.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42825-RA | 1752 | CG42825-RA | 114..1668 | 16..1570 | 7775 | 100 | Plus |
CG32054-RA | 1775 | CG32054-RA | 365..1174 | 233..1039 | 295 | 69.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10095838..10096969 | 1570..439 | 5660 | 100 | Minus |
3L | 28110227 | 3L | 10097752..10098002 | 266..16 | 1255 | 100 | Minus |
3L | 28110227 | 3L | 10097030..10097205 | 439..264 | 880 | 100 | Minus |
3L | 28110227 | 3L | 10093369..10093689 | 1039..722 | 265 | 72.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:29:25 has no hits.
BO08143.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:40 Download gff for
BO08143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6640-RA | 1194..2751 | 16..1574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:43 Download gff for
BO08143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6640-RA | 1194..2755 | 16..1578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:16 Download gff for
BO08143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42825-RA | 115..1668 | 17..1572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:40 Download gff for
BO08143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6640-RB | 79..1640 | 16..1578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:22 Download gff for
BO08143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42825-RA | 115..1668 | 17..1572 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:22 Download gff for
BO08143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10095836..10096968 | 440..1572 | 99 | <- | Minus |
3L | 10097030..10097202 | 267..439 | 100 | <- | Minus |
3L | 10097752..10098001 | 17..266 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:16 Download gff for
BO08143.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10088936..10090068 | 440..1572 | 99 | <- | Minus |
arm_3L | 10090130..10090302 | 267..439 | 100 | <- | Minus |
arm_3L | 10090852..10091101 | 17..266 | 100 | | Minus |
BO08143.pep Sequence
Translation from 16 to 1588
> BO08143.pep
MQNDKYPAPIGFYPPQGQPGYPQPASQPGYPQPGQPQHITPAETYGPQPP
PMPPRDPHTRVDPPGGCFQRNQKNKPQSNAVGAAGLIFISGGMNIAWAIG
FQGPIYYQTTKHNYIAWFIGAIIGALVTMALTNKVAKKYILQFSSVLVTV
GGLVIACTHNNGAGTTAACYLDGIANGLVFAPFMALVGEISVPYLRGKAS
ATLEQLCFGTGILLQILYVSNWTYSSYMTYNDFTSENMKGVLSTIYGVLA
LIMGSFFTIESPVLMLANNEEQAAIDALRRLQKPAVLTEETYELLAEHKR
YLAYNKNMSKSESISKALPTFMRLAYLRALNAMSISSFVIITYVVAILVS
NDLRNASSWYIGLAFCRWLGSLIPSFCMESLGRKKPAVFGLLVSCGLSFA
VGSQYNVYTYMSQVTVLIMIFEFFAGMAFSSNSAYLTEAYPMGVKQHFIG
LTFITEIFVFLIINVCDFNFGQGYNYFYIMGAMYLAGVILGVLTLPETRR
MTLQGAQEQFNKFVNFRFASFLDH
BO08143.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42825-PA | 518 | CG6640-PB | 1..518 | 1..518 | 2711 | 100 | Plus |
CG32054-PA | 563 | CG32054-PA | 1..563 | 1..518 | 1514 | 53.3 | Plus |
CG32053-PA | 496 | CG32053-PA | 45..492 | 67..514 | 783 | 39 | Plus |
CG42826-PA | 473 | CG42826-PA | 8..473 | 53..518 | 699 | 34.4 | Plus |
CG17930-PA | 502 | CG17930-PA | 10..495 | 22..512 | 461 | 29.2 | Plus |