Clone Sequence Records
BO08144.3prime Sequence
901 bp (853 high quality bases) assembled on 2006-01-06
> BO08144.3prime
ATGGTCTAGAAAGCTTGCTTTCTCAAAGTCCTTCAAGGGATAGTGCTCCT
TGTGGGCCTCGATATGTTTTTCCAGCTCGCTACGCTGCTCAATCAAATGA
TCCGGCATCTCCGCGTAGACGCCTTCGAACATCTCACGCCAGTTGGGCTT
GAGTTTCTTCTCGGACACTGCGATCTGCTTCAAAACCTTTTTCCTTATGT
CCTTGACATATTCGTTTTCGACAGTCTCGTCAAACCAGCCTTTGTGCACC
ATGTAGCGCTTAAGCTTGGATATTGGGTGCTCCACCGAGTTCCAAATCTC
GATCTCCTCCGCTGGTCGGTAGGCTGTACTATCATCTGAGGTGGAATGGT
GACCCACTCGATAGGCCAGTGCCTCGAACACCACCGGCTTGTTCTCCTTG
AGGACATACTCCCTGGCAGCCTTCATCGCATTATAGACGGCGAAGACGTC
TGTGCCATCCACTCGAATGGTAGTAATTCCATAGCCCATAGGTCCGCGAC
CGGCGATTCCATCGCCCTTGTACTGTTCATGCGATGGTGTGGATATGGCA
AAGCCGTTGTTTCGACAGAAGAGGATAGCCGGACAACCCAAAGTGGCAGC
AAAGTTAAAGGCAGCATGTGCATCTCCCTCGGAAGCAGCTCCCTCACCAA
AGTAACAGACCACACAGGCATCGTTGTTTGGCCTCAATTTCATGGCGTAG
GCGGCACCAACGGCCTGGGGCATTTGGGTGGAAAGCGGACTGGAGATGGT
GACAAAGTTAAGTTCCCTTGAGCCGTAGTGGACGGGCATCTGCTTGCCGC
GACCCAAGTCGTCCGTGTTGCCGTAGCACTGATCGATAAACTGGTCGATA
CGGAAAGCACGCCAAACCAGAACACCCCGCTCACGATACTGCCCGTAGAT
G
BO08144.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8199-PA | 1320 | CG8199-RA | 459..1317 | 877..19 | 4245 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:06:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8199-RA | 1750 | CG8199-RA | 525..1407 | 901..19 | 4340 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9556886..9557433 | 566..19 | 2740 | 100 | Minus |
3R | 32079331 | 3R | 9556605..9556770 | 731..566 | 830 | 100 | Minus |
3R | 32079331 | 3R | 9556369..9556538 | 901..732 | 775 | 97.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:06:41 has no hits.
BO08144.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:39:13 Download gff for
BO08144.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-PA | 435..1320 | 18..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:30:08 Download gff for
BO08144.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-PA | 435..1320 | 18..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:34 Download gff for
BO08144.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-RA | 525..1413 | 11..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:06 Download gff for
BO08144.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-RA | 525..1413 | 11..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:06 Download gff for
BO08144.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9556369..9556538 | 732..901 | 97 | -> | Minus |
3R | 9556605..9556770 | 566..731 | 100 | -> | Minus |
3R | 9556887..9557439 | 11..565 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:34 Download gff for
BO08144.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5382091..5382260 | 732..901 | 97 | -> | Minus |
arm_3R | 5382327..5382492 | 566..731 | 100 | -> | Minus |
arm_3R | 5382609..5383161 | 11..565 | 99 | | Minus |
BO08144.5prime Sequence
988 bp (787 high quality bases) assembled on 2006-01-06
> BO08144.5prime
GAAGTTATCAGTCGACATGTCATTCCTGCGAAAATCGGTGCACCTATTGG
GTTCTGTGGCGAGGCGCCAACGACACCTGAAAGTGATTGAAGGAGCGATC
TCGACAGCTGCGCGGGACTTCAGCTCAAAGCCATCGGAAGATTACGCCAA
TTTCCCCGGTGCCAAGGCTCCATTTGTCAGCAAATTGAACCTCATTCAAC
CGGAAGACTATGCGCCAATACCAATTTACCGGGTGATGGACCAGGATGGC
TATATAGCGGATGAGACCCAGGATCCCCAGCTGGGCCGTGAGGTTGTGGA
GAAAATGTTTCGCGATATGGTGCTGCTGAACACCATGGACAAAATCCTGT
ACGAATCCCAGCGACAGGGCAGAATCTCATTCTACATGACCAATTTCGGC
GAGGAGGCTTCACACATTGGCAGTGCCGCCGCCTTGGAGATGCGGGATCT
CATCTACGGGCAGTATCGTGAAGCGGGTGTTCTGGTTTGGCGTGGCTTCC
GTATCGACCAGTTTATCGATCAGTGCTACGGCAACACGGACGACTTGGGT
CGCGGCAAGCAGATGCCCGTCCACTACGGCTCAAGGGAACTTAACTTTGT
CACCATCTCCAGTCCGCTTTCCACCCAAATGCCCCAGGCCGTTGGTGCCG
CCTACGCCATGAAATTGAGGCCAAACAACGATGCCTGTGTGGTCTGTTAC
TTTGGTGAGGGAGCTGCTTCCGAGGGAGATGCACATGCTGCCTTTAACTT
TGCTGCCACTTTGGGTTGTCCGGCTATCCTCTTCTGTCGAAACAACGGCT
TTGCCATATCCACACCATCGCATGAACAGTACAAGGGCGATGGAATCGCC
GGTCGCGGACCTATGGGCTATGGAATTACTACCATTCGAGTGGATGGCAC
AGACGTCTTCGCCGTCTATAATGCGATGAAGGCTGCCAGGGAGTATGTCC
TCAAGGAGAACAAGCCGGTGGTGTTCGAGGCACTGGGC
BO08144.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8199-PA | 1320 | CG8199-RA | 1..970 | 17..986 | 4850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8199-RA | 1750 | CG8199-RA | 90..1060 | 16..986 | 4855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:47:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9556003..9556538 | 85..620 | 2680 | 100 | Plus |
3R | 32079331 | 3R | 9556886..9557086 | 786..986 | 1005 | 100 | Plus |
3R | 32079331 | 3R | 9556605..9556770 | 621..786 | 830 | 100 | Plus |
3R | 32079331 | 3R | 9555874..9555943 | 16..85 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:47:15 has no hits.
BO08144.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:39:14 Download gff for
BO08144.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-PA | 1..971 | 17..988 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:30:09 Download gff for
BO08144.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-PA | 1..971 | 17..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:09:38 Download gff for
BO08144.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-RA | 90..1061 | 16..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:30 Download gff for
BO08144.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-RA | 90..1061 | 16..988 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:30 Download gff for
BO08144.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9556887..9557087 | 787..988 | 99 | | Plus |
3R | 9555874..9555943 | 16..85 | 100 | -> | Plus |
3R | 9556004..9556538 | 86..620 | 100 | -> | Plus |
3R | 9556605..9556770 | 621..786 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:09:38 Download gff for
BO08144.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5381596..5381665 | 16..85 | 100 | -> | Plus |
arm_3R | 5381726..5382260 | 86..620 | 100 | -> | Plus |
arm_3R | 5382327..5382492 | 621..786 | 100 | -> | Plus |
arm_3R | 5382609..5382809 | 787..988 | 99 | | Plus |
BO08144.complete Sequence
1351 bp (1351 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631076
> BO08144.complete
GAAGTTATCAGTCGACATGTCATTCCTGCGAAAATCGGTGCACCTATTGG
GTTCTGTGGCGAGGCGCCAACGACACCTGAAAGTGATTGAAGGAGCGATC
TCGACAGCTGCGCGGGACTTCAGCTCAAAGCCATCGGAAGATTACGCCAA
TTTCCCCGGTGCCAAGGCTCCATTTGTCAGCAAATTGAACCTCATTCAAC
CGGAAGACTATGCGCCAATACCAATTTACCGGGTGATGGACCAGGATGGC
TATATAGCGGATGAGACCCAGGATCCCCAGCTGGGCCGTGAGGTTGTGGA
GAAAATGTTTCGCGATATGGTGCTGCTGAACACCATGGACAAAATCCTGT
ACGAATCCCAGCGACAGGGCAGAATCTCATTCTACATGACCAATTTCGGC
GAGGAGGCTTCACACATTGGCAGTGCCGCCGCCTTGGAGATGCGGGATCT
CATCTACGGGCAGTATCGTGAAGCGGGTGTTCTGGTTTGGCGTGGCTTCC
GTATCGACCAGTTTATCGATCAGTGCTACGGCAACACGGACGACTTGGGT
CGCGGCAAGCAGATGCCCGTCCACTACGGCTCAAGGGAACTTAACTTTGT
CACCATCTCCAGTCCGCTTTCCACCCAAATGCCCCAGGCCGTTGGTGCCG
CCTACGCCATGAAATTGAGGCCAAACAACGATGCCTGTGTGGTCTGTTAC
TTTGGTGAGGGAGCTGCTTCCGAGGGAGATGCACATGCTGCCTTTAACTT
TGCTGCCACTTTGGGTTGTCCGGCTATCCTCTTCTGTCGAAACAACGGCT
TTGCCATATCCACACCATCGCATGAACAGTACAAGGGCGATGGAATCGCC
GGTCGCGGACCTATGGGCTATGGAATTACTACCATTCGAGTGGATGGCAC
AGACGTCTTCGCCGTCTATAATGCGATGAAGGCTGCCAGGGAGTATGTCC
TCAAGGAGAACAAGCCGGTGGTGTTCGAGGCACTGGCCTATCGAGTGGGT
CACCATTCCACCTCAGATGATAGTACAGCCTACCGACCAGCGGAGGAGAT
CGAGATTTGGAACTCGGTGGAGCACCCAATATCCAAGCTTAAGCGCTACA
TGGTGCACAAAGGCTGGTTTGACGAGACTGTCGAAAACGAATATGTCAAG
GACATAAGGAAAAAGGTTTTGAAGCAGATCGCAGTGTCCGAGAAGAAACT
CAAGCCCAACTGGCGTGAGATGTTCGAAGGCGTCTACGCGGAGATGCCGG
ATCATTTGATTGAGCAGCGTAGCGAGCTGGAAAAACATATCGAGGCCCAC
AAGGAGCACTATCCCTTGAAGGACTTTGAGAAAGCAAGCTTTCTAGACCA
T
BO08144.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8199-RA | 1320 | CG8199-PA | 1..1317 | 17..1333 | 6585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8199-RA | 1750 | CG8199-RA | 90..1407 | 16..1333 | 6590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9556886..9557433 | 786..1333 | 2740 | 100 | Plus |
3R | 32079331 | 3R | 9556003..9556538 | 85..620 | 2680 | 100 | Plus |
3R | 32079331 | 3R | 9556605..9556770 | 621..786 | 830 | 100 | Plus |
3R | 32079331 | 3R | 9555874..9555943 | 16..85 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:30:24 has no hits.
BO08144.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:41 Download gff for
BO08144.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-RA | 1..1320 | 17..1334 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:45 Download gff for
BO08144.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-RA | 80..1403 | 16..1341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:56 Download gff for
BO08144.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-RA | 91..1407 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:41 Download gff for
BO08144.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-RA | 80..1403 | 16..1341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:05 Download gff for
BO08144.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8199-RA | 91..1407 | 17..1335 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:05 Download gff for
BO08144.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9556605..9556770 | 621..786 | 100 | -> | Plus |
3R | 9555875..9555943 | 17..85 | 100 | -> | Plus |
3R | 9556004..9556538 | 86..620 | 100 | -> | Plus |
3R | 9556887..9557433 | 787..1335 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:56 Download gff for
BO08144.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5381597..5381665 | 17..85 | 100 | -> | Plus |
arm_3R | 5381726..5382260 | 86..620 | 100 | -> | Plus |
arm_3R | 5382327..5382492 | 621..786 | 100 | -> | Plus |
arm_3R | 5382609..5383155 | 787..1335 | 99 | | Plus |
BO08144.pep Sequence
Translation from 16 to 1351
> BO08144.pep
MSFLRKSVHLLGSVARRQRHLKVIEGAISTAARDFSSKPSEDYANFPGAK
APFVSKLNLIQPEDYAPIPIYRVMDQDGYIADETQDPQLGREVVEKMFRD
MVLLNTMDKILYESQRQGRISFYMTNFGEEASHIGSAAALEMRDLIYGQY
REAGVLVWRGFRIDQFIDQCYGNTDDLGRGKQMPVHYGSRELNFVTISSP
LSTQMPQAVGAAYAMKLRPNNDACVVCYFGEGAASEGDAHAAFNFAATLG
CPAILFCRNNGFAISTPSHEQYKGDGIAGRGPMGYGITTIRVDGTDVFAV
YNAMKAAREYVLKENKPVVFEALAYRVGHHSTSDDSTAYRPAEEIEIWNS
VEHPISKLKRYMVHKGWFDETVENEYVKDIRKKVLKQIAVSEKKLKPNWR
EMFEGVYAEMPDHLIEQRSELEKHIEAHKEHYPLKDFEKASFLDH
BO08144.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8199-PA | 439 | CG8199-PA | 1..439 | 1..439 | 2310 | 100 | Plus |
l(1)G0334-PB | 328 | CG7010-PB | 29..278 | 128..388 | 262 | 31.4 | Plus |
l(1)G0334-PD | 399 | CG7010-PD | 100..349 | 128..388 | 262 | 31.4 | Plus |
l(1)G0334-PA | 399 | CG7010-PA | 100..349 | 128..388 | 262 | 31.4 | Plus |
l(1)G0334-PC | 443 | CG7010-PC | 144..393 | 128..388 | 262 | 31.4 | Plus |