Clone BO08144 Report

Search the DGRC for BO08144

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:81
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG8199-RA
Protein status:BO08144.pep: validated full length
Sequenced Size:1351

Clone Sequence Records

BO08144.3prime Sequence

901 bp (853 high quality bases) assembled on 2006-01-06

> BO08144.3prime
ATGGTCTAGAAAGCTTGCTTTCTCAAAGTCCTTCAAGGGATAGTGCTCCT
TGTGGGCCTCGATATGTTTTTCCAGCTCGCTACGCTGCTCAATCAAATGA
TCCGGCATCTCCGCGTAGACGCCTTCGAACATCTCACGCCAGTTGGGCTT
GAGTTTCTTCTCGGACACTGCGATCTGCTTCAAAACCTTTTTCCTTATGT
CCTTGACATATTCGTTTTCGACAGTCTCGTCAAACCAGCCTTTGTGCACC
ATGTAGCGCTTAAGCTTGGATATTGGGTGCTCCACCGAGTTCCAAATCTC
GATCTCCTCCGCTGGTCGGTAGGCTGTACTATCATCTGAGGTGGAATGGT
GACCCACTCGATAGGCCAGTGCCTCGAACACCACCGGCTTGTTCTCCTTG
AGGACATACTCCCTGGCAGCCTTCATCGCATTATAGACGGCGAAGACGTC
TGTGCCATCCACTCGAATGGTAGTAATTCCATAGCCCATAGGTCCGCGAC
CGGCGATTCCATCGCCCTTGTACTGTTCATGCGATGGTGTGGATATGGCA
AAGCCGTTGTTTCGACAGAAGAGGATAGCCGGACAACCCAAAGTGGCAGC
AAAGTTAAAGGCAGCATGTGCATCTCCCTCGGAAGCAGCTCCCTCACCAA
AGTAACAGACCACACAGGCATCGTTGTTTGGCCTCAATTTCATGGCGTAG
GCGGCACCAACGGCCTGGGGCATTTGGGTGGAAAGCGGACTGGAGATGGT
GACAAAGTTAAGTTCCCTTGAGCCGTAGTGGACGGGCATCTGCTTGCCGC
GACCCAAGTCGTCCGTGTTGCCGTAGCACTGATCGATAAACTGGTCGATA
CGGAAAGCACGCCAAACCAGAACACCCCGCTCACGATACTGCCCGTAGAT
G

BO08144.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8199-PA 1320 CG8199-RA 459..1317 877..19 4245 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8199-RA 1750 CG8199-RA 525..1407 901..19 4340 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9556886..9557433 566..19 2740 100 Minus
3R 32079331 3R 9556605..9556770 731..566 830 100 Minus
3R 32079331 3R 9556369..9556538 901..732 775 97.1 Minus
Blast to na_te.dros performed on 2015-02-11 03:06:41 has no hits.

BO08144.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:39:13 Download gff for BO08144.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8199-PA 435..1320 18..901 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:30:08 Download gff for BO08144.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8199-PA 435..1320 18..901 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:34 Download gff for BO08144.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 525..1413 11..901 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:06 Download gff for BO08144.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 525..1413 11..901 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:06 Download gff for BO08144.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9556369..9556538 732..901 97 -> Minus
3R 9556605..9556770 566..731 100 -> Minus
3R 9556887..9557439 11..565 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:34 Download gff for BO08144.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5382091..5382260 732..901 97 -> Minus
arm_3R 5382327..5382492 566..731 100 -> Minus
arm_3R 5382609..5383161 11..565 99   Minus

BO08144.5prime Sequence

988 bp (787 high quality bases) assembled on 2006-01-06

> BO08144.5prime
GAAGTTATCAGTCGACATGTCATTCCTGCGAAAATCGGTGCACCTATTGG
GTTCTGTGGCGAGGCGCCAACGACACCTGAAAGTGATTGAAGGAGCGATC
TCGACAGCTGCGCGGGACTTCAGCTCAAAGCCATCGGAAGATTACGCCAA
TTTCCCCGGTGCCAAGGCTCCATTTGTCAGCAAATTGAACCTCATTCAAC
CGGAAGACTATGCGCCAATACCAATTTACCGGGTGATGGACCAGGATGGC
TATATAGCGGATGAGACCCAGGATCCCCAGCTGGGCCGTGAGGTTGTGGA
GAAAATGTTTCGCGATATGGTGCTGCTGAACACCATGGACAAAATCCTGT
ACGAATCCCAGCGACAGGGCAGAATCTCATTCTACATGACCAATTTCGGC
GAGGAGGCTTCACACATTGGCAGTGCCGCCGCCTTGGAGATGCGGGATCT
CATCTACGGGCAGTATCGTGAAGCGGGTGTTCTGGTTTGGCGTGGCTTCC
GTATCGACCAGTTTATCGATCAGTGCTACGGCAACACGGACGACTTGGGT
CGCGGCAAGCAGATGCCCGTCCACTACGGCTCAAGGGAACTTAACTTTGT
CACCATCTCCAGTCCGCTTTCCACCCAAATGCCCCAGGCCGTTGGTGCCG
CCTACGCCATGAAATTGAGGCCAAACAACGATGCCTGTGTGGTCTGTTAC
TTTGGTGAGGGAGCTGCTTCCGAGGGAGATGCACATGCTGCCTTTAACTT
TGCTGCCACTTTGGGTTGTCCGGCTATCCTCTTCTGTCGAAACAACGGCT
TTGCCATATCCACACCATCGCATGAACAGTACAAGGGCGATGGAATCGCC
GGTCGCGGACCTATGGGCTATGGAATTACTACCATTCGAGTGGATGGCAC
AGACGTCTTCGCCGTCTATAATGCGATGAAGGCTGCCAGGGAGTATGTCC
TCAAGGAGAACAAGCCGGTGGTGTTCGAGGCACTGGGC

BO08144.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8199-PA 1320 CG8199-RA 1..970 17..986 4850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8199-RA 1750 CG8199-RA 90..1060 16..986 4855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9556003..9556538 85..620 2680 100 Plus
3R 32079331 3R 9556886..9557086 786..986 1005 100 Plus
3R 32079331 3R 9556605..9556770 621..786 830 100 Plus
3R 32079331 3R 9555874..9555943 16..85 350 100 Plus
Blast to na_te.dros performed on 2015-02-12 15:47:15 has no hits.

BO08144.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:39:14 Download gff for BO08144.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8199-PA 1..971 17..988 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:30:09 Download gff for BO08144.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8199-PA 1..971 17..988 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:09:38 Download gff for BO08144.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 90..1061 16..988 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:30 Download gff for BO08144.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 90..1061 16..988 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:30 Download gff for BO08144.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9556887..9557087 787..988 99   Plus
3R 9555874..9555943 16..85 100 -> Plus
3R 9556004..9556538 86..620 100 -> Plus
3R 9556605..9556770 621..786 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:09:38 Download gff for BO08144.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5381596..5381665 16..85 100 -> Plus
arm_3R 5381726..5382260 86..620 100 -> Plus
arm_3R 5382327..5382492 621..786 100 -> Plus
arm_3R 5382609..5382809 787..988 99   Plus

BO08144.complete Sequence

1351 bp (1351 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631076

> BO08144.complete
GAAGTTATCAGTCGACATGTCATTCCTGCGAAAATCGGTGCACCTATTGG
GTTCTGTGGCGAGGCGCCAACGACACCTGAAAGTGATTGAAGGAGCGATC
TCGACAGCTGCGCGGGACTTCAGCTCAAAGCCATCGGAAGATTACGCCAA
TTTCCCCGGTGCCAAGGCTCCATTTGTCAGCAAATTGAACCTCATTCAAC
CGGAAGACTATGCGCCAATACCAATTTACCGGGTGATGGACCAGGATGGC
TATATAGCGGATGAGACCCAGGATCCCCAGCTGGGCCGTGAGGTTGTGGA
GAAAATGTTTCGCGATATGGTGCTGCTGAACACCATGGACAAAATCCTGT
ACGAATCCCAGCGACAGGGCAGAATCTCATTCTACATGACCAATTTCGGC
GAGGAGGCTTCACACATTGGCAGTGCCGCCGCCTTGGAGATGCGGGATCT
CATCTACGGGCAGTATCGTGAAGCGGGTGTTCTGGTTTGGCGTGGCTTCC
GTATCGACCAGTTTATCGATCAGTGCTACGGCAACACGGACGACTTGGGT
CGCGGCAAGCAGATGCCCGTCCACTACGGCTCAAGGGAACTTAACTTTGT
CACCATCTCCAGTCCGCTTTCCACCCAAATGCCCCAGGCCGTTGGTGCCG
CCTACGCCATGAAATTGAGGCCAAACAACGATGCCTGTGTGGTCTGTTAC
TTTGGTGAGGGAGCTGCTTCCGAGGGAGATGCACATGCTGCCTTTAACTT
TGCTGCCACTTTGGGTTGTCCGGCTATCCTCTTCTGTCGAAACAACGGCT
TTGCCATATCCACACCATCGCATGAACAGTACAAGGGCGATGGAATCGCC
GGTCGCGGACCTATGGGCTATGGAATTACTACCATTCGAGTGGATGGCAC
AGACGTCTTCGCCGTCTATAATGCGATGAAGGCTGCCAGGGAGTATGTCC
TCAAGGAGAACAAGCCGGTGGTGTTCGAGGCACTGGCCTATCGAGTGGGT
CACCATTCCACCTCAGATGATAGTACAGCCTACCGACCAGCGGAGGAGAT
CGAGATTTGGAACTCGGTGGAGCACCCAATATCCAAGCTTAAGCGCTACA
TGGTGCACAAAGGCTGGTTTGACGAGACTGTCGAAAACGAATATGTCAAG
GACATAAGGAAAAAGGTTTTGAAGCAGATCGCAGTGTCCGAGAAGAAACT
CAAGCCCAACTGGCGTGAGATGTTCGAAGGCGTCTACGCGGAGATGCCGG
ATCATTTGATTGAGCAGCGTAGCGAGCTGGAAAAACATATCGAGGCCCAC
AAGGAGCACTATCCCTTGAAGGACTTTGAGAAAGCAAGCTTTCTAGACCA
T

BO08144.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8199-RA 1320 CG8199-PA 1..1317 17..1333 6585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8199-RA 1750 CG8199-RA 90..1407 16..1333 6590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9556886..9557433 786..1333 2740 100 Plus
3R 32079331 3R 9556003..9556538 85..620 2680 100 Plus
3R 32079331 3R 9556605..9556770 621..786 830 100 Plus
3R 32079331 3R 9555874..9555943 16..85 350 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:30:24 has no hits.

BO08144.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:41 Download gff for BO08144.complete
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 1..1320 17..1334 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:45 Download gff for BO08144.complete
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 80..1403 16..1341 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:56 Download gff for BO08144.complete
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 91..1407 17..1335 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:41 Download gff for BO08144.complete
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 80..1403 16..1341 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:05 Download gff for BO08144.complete
Subject Subject Range Query Range Percent Splice Strand
CG8199-RA 91..1407 17..1335 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:05 Download gff for BO08144.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9556605..9556770 621..786 100 -> Plus
3R 9555875..9555943 17..85 100 -> Plus
3R 9556004..9556538 86..620 100 -> Plus
3R 9556887..9557433 787..1335 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:56 Download gff for BO08144.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5381597..5381665 17..85 100 -> Plus
arm_3R 5381726..5382260 86..620 100 -> Plus
arm_3R 5382327..5382492 621..786 100 -> Plus
arm_3R 5382609..5383155 787..1335 99   Plus

BO08144.pep Sequence

Translation from 16 to 1351

> BO08144.pep
MSFLRKSVHLLGSVARRQRHLKVIEGAISTAARDFSSKPSEDYANFPGAK
APFVSKLNLIQPEDYAPIPIYRVMDQDGYIADETQDPQLGREVVEKMFRD
MVLLNTMDKILYESQRQGRISFYMTNFGEEASHIGSAAALEMRDLIYGQY
REAGVLVWRGFRIDQFIDQCYGNTDDLGRGKQMPVHYGSRELNFVTISSP
LSTQMPQAVGAAYAMKLRPNNDACVVCYFGEGAASEGDAHAAFNFAATLG
CPAILFCRNNGFAISTPSHEQYKGDGIAGRGPMGYGITTIRVDGTDVFAV
YNAMKAAREYVLKENKPVVFEALAYRVGHHSTSDDSTAYRPAEEIEIWNS
VEHPISKLKRYMVHKGWFDETVENEYVKDIRKKVLKQIAVSEKKLKPNWR
EMFEGVYAEMPDHLIEQRSELEKHIEAHKEHYPLKDFEKASFLDH

BO08144.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8199-PA 439 CG8199-PA 1..439 1..439 2310 100 Plus
l(1)G0334-PB 328 CG7010-PB 29..278 128..388 262 31.4 Plus
l(1)G0334-PD 399 CG7010-PD 100..349 128..388 262 31.4 Plus
l(1)G0334-PA 399 CG7010-PA 100..349 128..388 262 31.4 Plus
l(1)G0334-PC 443 CG7010-PC 144..393 128..388 262 31.4 Plus