Clone Sequence Records
BO08149.3prime Sequence
942 bp (840 high quality bases) assembled on 2006-01-06
> BO08149.3prime
ATGGTCTAGAAAGCTTGCCACCTCGGTGCTGTGCGTCTGAATTCGGACCT
TCTTCACGCTTCCATTGCGCCGCATAGGTGGCGAGCTTCCGGATCCAGAA
TAGCCGGGATTTTGAATGCCTAACGTTGGATCCGGCCGTGGTCTCGGCTT
CTTCAGACTCGATCGCAGCGGTGAACGAGTCACCGAGTCAAGGGTGGATC
CATTGGACACGCTGGTCACGGTGGTGCTCATGGAGGCCACGCTGCCCGCC
GTTCCCGCTCCATTCCGGATTCCGCTGTAGGGCTTACCGGATGCGTCCGT
CACCGAAACGCCGTTGCGACTGCGAGGCTCCTTGAAACCAGGATTATTGA
ACGTAGTGGCACTGCCCGGAGATGACACATCCAGCGCCATTGTGGGATCT
CCGCCTGGACTGCGCGAGTAGATCACATCGTACAGGGCGGCCACGAACAG
AGCAATTGTCAAAACAATAGCCACAATCTGTATATAGAAGGAAATGCCCC
GCGATATCTTGAAGCCATAGCGCTCCTGCTCATCAATTTGCAGAGCAAAC
AAAACCGTCGCTATGATGGCCAGTACACCTCCCAGCAATGCCAACATTAA
CTTCACTATCACTAGAGTTGTGTAGGGCATAACCACCTTCTCCCTGGATG
AGATCATCGCGTGTTGAATGACCGACAGAATGCAGAAGATGCCCAGCACA
GCTGAGCTGCCAATGGCCAAGAGTCCACTGACAAAAACCGCATTACTTAA
TCTAAACTTGGACACGTCGTTGCCGCATTTCTCGCGATTATAAGTCAATT
GCTTGCAGACCTTAAACGGTCCGAAATAACCTCGATCGAAGTCATAGCCG
CCCGATGGACTATCGTAGTAACCCCCAATGGGTATGCCAATGGCCACAGA
TGCCAAGGCGAAGCAAATAAAGCCAAGACGGGTCACCCCAGC
BO08149.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13698-PB | 951 | CG13698-RB | 25..948 | 942..19 | 4545 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:35:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13698-RC | 1617 | CG13698-RC | 642..1565 | 942..19 | 4575 | 99.7 | Minus |
CG13698-RB | 2418 | CG13698-RB | 728..1651 | 942..19 | 4575 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:35:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18089184..18089646 | 19..481 | 2315 | 100 | Plus |
3L | 28110227 | 3L | 18090009..18090176 | 576..743 | 840 | 100 | Plus |
3L | 28110227 | 3L | 18090279..18090387 | 744..852 | 545 | 100 | Plus |
3L | 28110227 | 3L | 18089846..18089948 | 478..580 | 515 | 100 | Plus |
3L | 28110227 | 3L | 18090447..18090538 | 851..942 | 415 | 96.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:35:51 has no hits.
BO08149.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:39:22 Download gff for
BO08149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-PB | 25..951 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:30:21 Download gff for
BO08149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-PB | 25..951 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:14:03 Download gff for
BO08149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-RB | 728..1655 | 14..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:23:13 Download gff for
BO08149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-RB | 728..1655 | 14..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:23:13 Download gff for
BO08149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18090448..18090538 | 852..942 | 96 | | Plus |
3L | 18089180..18089642 | 14..477 | 99 | <- | Plus |
3L | 18089846..18089946 | 478..578 | 100 | <- | Plus |
3L | 18090012..18090176 | 579..743 | 100 | <- | Plus |
3L | 18090279..18090386 | 744..851 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:14:03 Download gff for
BO08149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18082280..18082742 | 14..477 | 99 | <- | Plus |
arm_3L | 18082946..18083046 | 478..578 | 100 | <- | Plus |
arm_3L | 18083112..18083276 | 579..743 | 100 | <- | Plus |
arm_3L | 18083379..18083486 | 744..851 | 100 | <- | Plus |
arm_3L | 18083548..18083638 | 852..942 | 96 | | Plus |
BO08149.5prime Sequence
838 bp (828 high quality bases) assembled on 2006-01-06
> BO08149.5prime
GAAGTTATCAGTCGACATGGCAAAGTCGACACTTTATGCTGCTGGGGTGA
CCTGTCTGGGCTTTATTTGCTTCGCCTTGGCATCTGTGGCCATTGGCATA
CCCATTTGGGGTTACTACGATAGTCCATCGGGCGGCTATGACTTCGATCG
AGGTTATTTCGGACCGTTTAAGGTCTGCAAGCAATTGACTTATAATCGCG
AGAAATGCGGCAACGACGTGTCCAAGTTTAGATTAAGTAATGCGGTTTTT
GTCAGTGGACTCTTGGCCATTGGCAGCTCAGCTGTGCTGGGCATCTTCTG
CATTCTGTCGGTCATTCAACACGCGATGATCTCATCCAGGGAGAAGGTGG
TTATGCCCTACACAACTCTAGTGATAGTGAAGTTAATGTTGGCATTGCTG
GGAGGTGTACTGGCCATCATAGCGACGGTTTTGTTTGCTCTGCAAATTGA
TGAGCAGGAGCGCTATGGCTTCAAGATATCGCGGGGCATTTCCTTCTATA
TACAGATTGTGGCTATTGTTTTGACAATTGCTCTGTTCGTGGCCGCCCTG
TACGATGTGATCTACTCGCGCAGTCCAGGCGGAGATCCCACAATGGCGCT
GGATGTGTCATCTCCGGGCAGTGCCACTACGTTCAATAATCCTGGTTTCA
AGGAGCCTCGCAGTCGCAACGGCGTTTCGGTGACGGACGCATCCGGTAAG
CCCTACAGCGGAATCCGGAATGGAGCGGGAACGGCGGGCAGCGTGGCCTC
CATGAGCACCACCGTGACCAGCGTGTCCAATGGATCCACCCTTGACTCGG
TGACTCGTTCACCGCTGCGATCGAGTCTGAAGAAGCCG
BO08149.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13698-PB | 951 | CG13698-RB | 1..822 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:14:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13698-RC | 1617 | CG13698-RC | 616..1439 | 15..838 | 4120 | 100 | Plus |
CG13698-RB | 2418 | CG13698-RB | 702..1525 | 15..838 | 4120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:14:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18089310..18089646 | 838..502 | 1685 | 100 | Minus |
3L | 28110227 | 3L | 18090009..18090176 | 407..240 | 840 | 100 | Minus |
3L | 28110227 | 3L | 18090447..18090564 | 132..15 | 590 | 100 | Minus |
3L | 28110227 | 3L | 18090279..18090387 | 239..131 | 545 | 100 | Minus |
3L | 28110227 | 3L | 18089846..18089948 | 505..403 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:14:49 has no hits.
BO08149.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:39:24 Download gff for
BO08149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-PB | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:30:22 Download gff for
BO08149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-PB | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:58:20 Download gff for
BO08149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-RB | 693..1525 | 6..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:02:40 Download gff for
BO08149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-RB | 693..1525 | 6..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:02:40 Download gff for
BO08149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18089310..18089642 | 506..838 | 100 | <- | Minus |
3L | 18089846..18089946 | 405..505 | 100 | <- | Minus |
3L | 18090012..18090176 | 240..404 | 100 | <- | Minus |
3L | 18090279..18090386 | 132..239 | 100 | <- | Minus |
3L | 18090448..18090573 | 6..131 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:58:20 Download gff for
BO08149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18082410..18082742 | 506..838 | 100 | <- | Minus |
arm_3L | 18082946..18083046 | 405..505 | 100 | <- | Minus |
arm_3L | 18083112..18083276 | 240..404 | 100 | <- | Minus |
arm_3L | 18083379..18083486 | 132..239 | 100 | <- | Minus |
arm_3L | 18083548..18083673 | 6..131 | 96 | | Minus |
BO08149.complete Sequence
982 bp (982 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631077
> BO08149.complete
GAAGTTATCAGTCGACATGGCAAAGTCGACACTTTATGCTGCTGGGGTGA
CCTGTCTGGGCTTTATTTGCTTCGCCTTGGCATCTGTGGCCATTGGCATA
CCCATTTGGGGTTACTACGATAGTCCATCGGGCGGCTATGACTTCGATCG
AGGTTATTTCGGACCGTTTAAGGTCTGCAAGCAATTGACTTATAATCGCG
AGAAATGCGGCAACGACGTGTCCAAGTTTAGATTAAGTAATGCGGTTTTT
GTCAGTGGACTCTTGGCCATTGGCAGCTCAGCTGTGCTGGGCATCTTCTG
CATTCTGTCGGTCATTCAACACGCGATGATCTCATCCAGGGAGAAGGTGG
TTATGCCCTACACAACTCTAGTGATAGTGAAGTTAATGTTGGCATTGCTG
GGAGGTGTACTGGCCATCATAGCGACGGTTTTGTTTGCTCTGCAAATTGA
TGAGCAGGAGCGCTATGGCTTCAAGATATCGCGGGGCATTTCCTTCTATA
TACAGATTGTGGCTATTGTTTTGACAATTGCTCTGTTCGTGGCCGCCCTG
TACGATGTGATCTACTCGCGCAGTCCAGGCGGAGATCCCACAATGGCGCT
GGATGTGTCATCTCCGGGCAGTGCCACTACGTTCAATAATCCTGGTTTCA
AGGAGCCTCGCAGTCGCAACGGCGTTTCGGTGACGGACGCATCCGGTAAG
CCCTACAGCGGAATCCGGAATGGAGCGGGAACGGCGGGCAGCGTGGCCTC
CATGAGCACCACCGTGACCAGCGTGTCCAATGGATCCACCCTTGACTCGG
TGACTCGTTCACCGCTGCGATCGAGTCTGAAGAAGCCGAGACCACGGCCG
GATCCAACGTTAGGCATTCAAAATCCCGGCTATTCTGGATCCGGAAGCTC
GCCACCTATGCGGCGCAATGGAAGCGTGAAGAAGGTCCGAATTCAGACGC
ACAGCACCGAGGTGGCAAGCTTTCTAGACCAT
BO08149.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:23:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13698-RC | 951 | CG13698-PC | 1..948 | 17..964 | 4740 | 100 | Plus |
CG13698-RB | 951 | CG13698-PB | 1..948 | 17..964 | 4740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13698-RC | 1617 | CG13698-RC | 616..1565 | 15..964 | 4750 | 100 | Plus |
CG13698-RB | 2418 | CG13698-RB | 702..1651 | 15..964 | 4750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18089184..18089646 | 964..502 | 2315 | 100 | Minus |
3L | 28110227 | 3L | 18090009..18090176 | 407..240 | 840 | 100 | Minus |
3L | 28110227 | 3L | 18090447..18090564 | 132..15 | 590 | 100 | Minus |
3L | 28110227 | 3L | 18090279..18090387 | 239..131 | 545 | 100 | Minus |
3L | 28110227 | 3L | 18089846..18089948 | 505..403 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:23:28 has no hits.
BO08149.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:42 Download gff for
BO08149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-RB | 1..951 | 17..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:47 Download gff for
BO08149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-RB | 674..1636 | 6..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:27 Download gff for
BO08149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-RB | 704..1651 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:42 Download gff for
BO08149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-RB | 674..1636 | 6..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:53 Download gff for
BO08149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13698-RB | 704..1651 | 17..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:53 Download gff for
BO08149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18090012..18090176 | 240..404 | 100 | <- | Minus |
3L | 18090279..18090386 | 132..239 | 100 | <- | Minus |
3L | 18090448..18090562 | 17..131 | 100 | | Minus |
3L | 18089182..18089642 | 506..966 | 99 | <- | Minus |
3L | 18089846..18089946 | 405..505 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:27 Download gff for
BO08149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18082282..18082742 | 506..966 | 99 | <- | Minus |
arm_3L | 18082946..18083046 | 405..505 | 100 | <- | Minus |
arm_3L | 18083112..18083276 | 240..404 | 100 | <- | Minus |
arm_3L | 18083379..18083486 | 132..239 | 100 | <- | Minus |
arm_3L | 18083548..18083662 | 17..131 | 100 | | Minus |
BO08149.pep Sequence
Translation from 16 to 982
> BO08149.pep
MAKSTLYAAGVTCLGFICFALASVAIGIPIWGYYDSPSGGYDFDRGYFGP
FKVCKQLTYNREKCGNDVSKFRLSNAVFVSGLLAIGSSAVLGIFCILSVI
QHAMISSREKVVMPYTTLVIVKLMLALLGGVLAIIATVLFALQIDEQERY
GFKISRGISFYIQIVAIVLTIALFVAALYDVIYSRSPGGDPTMALDVSSP
GSATTFNNPGFKEPRSRNGVSVTDASGKPYSGIRNGAGTAGSVASMSTTV
TSVSNGSTLDSVTRSPLRSSLKKPRPRPDPTLGIQNPGYSGSGSSPPMRR
NGSVKKVRIQTHSTEVASFLDH
BO08149.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13698-PC | 316 | CG13698-PC | 1..316 | 1..316 | 1602 | 100 | Plus |
CG13698-PB | 316 | CG13698-PB | 1..316 | 1..316 | 1602 | 100 | Plus |