Clone Sequence Records
BO08150.3prime Sequence
671 bp (670 high quality bases) assembled on 2006-01-06
> BO08150.3prime
ATGGTCTAGAAAGCTTGCCTGGCAGATTGTGCTGCTGCTGGGCAGCAAGT
TTTGTTGACGCAACATATAACAAACCGTGCCGCGGAAATCGCGCAGCGAA
TGGTCCTGCAGCTGCTGATCGAAGACGCCATTGTAGACGATGGTGGGAAT
GAAGCTCGGGCTGTACTGTTTGGTCACCAGCTCCGCCTGCAGCTGCAATT
TGGTGCCCGTCTCGCTGGACAGGCAGTGGACCACATCGGTGAGCAGGCCT
GCCTCATTGGCACACTGATCAATGCGGGAATAATCCGGAGCTAGCATCTG
GCACACCACGAATTTAACCTGCGCCGCCTGGTTTGCGGTGCTGTTGATGA
CGCAACTCTGGAGGCGATTGCCCTTGCACTCAGCCGGTCCGTGCTGGCAG
TGGAAGATGGCACCATTGCGCTCCGACTGCGATTTTCCGAAGGGCACTAA
GAGTATATCAATGTAGTCCCCGAACTCCTCGTAAACGGGTCCTAGCTGAT
GCATGAAGTTCCTGCTGTCCGGGCACAAGGACTCGTAAAGGAGGGTGATG
TGCAGCTTGTTGGACTGGCGCTTCTCCCGTGGCTTCTCCTCGAGCTTCGC
CCATCCGAGGGACAGAACTAGAAGCAGAAGGCTTGCGGTGGACGCCAACT
TCGTCATGTCGACTGATAACT
BO08150.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9427-PA | 642 | CG9427-RA | 1..639 | 657..19 | 3170 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:36:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9427-RA | 847 | CG9427-RA | 141..779 | 657..19 | 3180 | 99.8 | Minus |
CG9427-RB | 719 | CG9427-RB | 113..651 | 557..19 | 2695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:36:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9625669..9625961 | 265..557 | 1465 | 100 | Plus |
3R | 32079331 | 3R | 9625425..9625567 | 125..267 | 715 | 100 | Plus |
3R | 32079331 | 3R | 9625225..9625332 | 19..126 | 540 | 100 | Plus |
3R | 32079331 | 3R | 9626235..9626336 | 556..657 | 495 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:36:28 has no hits.
BO08150.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:39:25 Download gff for
BO08150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-PA | 1..642 | 18..657 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:30:23 Download gff for
BO08150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-PA | 1..642 | 18..657 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:10:34 Download gff for
BO08150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-RA | 134..779 | 19..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:58:28 Download gff for
BO08150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-RA | 134..779 | 19..666 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:58:28 Download gff for
BO08150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9625669..9625959 | 265..555 | 100 | <- | Plus |
3R | 9626235..9626343 | 556..666 | 95 | | Plus |
3R | 9625225..9625332 | 19..126 | 100 | <- | Plus |
3R | 9625427..9625564 | 127..264 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:10:34 Download gff for
BO08150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5450947..5451054 | 19..126 | 100 | <- | Plus |
arm_3R | 5451149..5451286 | 127..264 | 100 | <- | Plus |
arm_3R | 5451391..5451681 | 265..555 | 100 | <- | Plus |
arm_3R | 5451957..5452065 | 556..666 | 95 | | Plus |
BO08150.5prime Sequence
671 bp (670 high quality bases) assembled on 2006-01-06
> BO08150.5prime
GAAGTTATCAGTCGACATGACGAAGTTGGCGTCCACCGCAAGCCTTCTGC
TTCTCGTTCTGTCCCTCGGATGGGCGAAGCTCGAGGAGAAGCCACGGGAG
AAGCGCCAGTCCAACAAGCTGCACATCACCCTCCTTTACGAGTCCTTGTG
CCCGGACAGCAGGAACTTCATGCATCAGCTAGGACCCGTTTACGAGGAGT
TCGGGGACTACATTGATATACTCTTAGTGCCCTTCGGAAAATCGCAGTCG
GAGCGCAATGGTGCCATCTTCCACTGCCAGCACGGACCGGCTGAGTGCAA
GGGCAATCGCCTCCAGAGTTGCGTCATCAACAGCACCGCAAACCAGGCGG
CGCAGGTTAAATTCGTGGTGTGCCAGATGCTAGCTCCGGATTATTCCCGC
ATTGATCAGTGTGCCAATGAGGCAGGCCTGCTCACCGATGTGGTCCACTG
CCTGTCCAGCGAGACGGGCACCAAATTGCAGCTGCAGGCGGAGCTGGTGA
CCAAACAGTACAGCCCGAGCTTCATTCCCACCATCGTCTACAATGGCGTC
TTCGATCAGCAGCTGCAGGACCATTCGCTGCGCGATTTCCGCGGCACGGT
TTGTTATATGTTGCGTCAACAAAACTTGCTGCCCAGCAGCAGCACAATCT
GCCAGGCAAGCTTTCTAGACC
BO08150.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9427-PA | 642 | CG9427-RA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:39:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9427-RA | 847 | CG9427-RA | 141..779 | 17..655 | 3195 | 100 | Plus |
CG9427-RB | 719 | CG9427-RB | 113..651 | 117..655 | 2695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:39:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9625669..9625961 | 409..117 | 1465 | 100 | Minus |
3R | 32079331 | 3R | 9625425..9625567 | 549..407 | 715 | 100 | Minus |
3R | 32079331 | 3R | 9625225..9625332 | 655..548 | 540 | 100 | Minus |
3R | 32079331 | 3R | 9626235..9626336 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:39:12 has no hits.
BO08150.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:39:26 Download gff for
BO08150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-PA | 1..642 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:30:25 Download gff for
BO08150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-PA | 1..642 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:38:59 Download gff for
BO08150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-RA | 134..779 | 8..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:41 Download gff for
BO08150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-RA | 134..779 | 8..655 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:41 Download gff for
BO08150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9625225..9625332 | 548..655 | 100 | <- | Minus |
3R | 9625427..9625564 | 410..547 | 100 | <- | Minus |
3R | 9625669..9625959 | 119..409 | 100 | <- | Minus |
3R | 9626235..9626343 | 8..118 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:38:59 Download gff for
BO08150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5450947..5451054 | 548..655 | 100 | <- | Minus |
arm_3R | 5451149..5451286 | 410..547 | 100 | <- | Minus |
arm_3R | 5451391..5451681 | 119..409 | 100 | <- | Minus |
arm_3R | 5451957..5452065 | 8..118 | 96 | | Minus |
BO08150.complete Sequence
673 bp (673 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631078
> BO08150.complete
GAAGTTATCAGTCGACATGACGAAGTTGGCGTCCACCGCAAGCCTTCTGC
TTCTCGTTCTGTCCCTCGGATGGGCGAAGCTCGAGGAGAAGCCACGGGAG
AAGCGCCAGTCCAACAAGCTGCACATCACCCTCCTTTACGAGTCCTTGTG
CCCGGACAGCAGGAACTTCATGCATCAGCTAGGACCCGTTTACGAGGAGT
TCGGGGACTACATTGATATACTCTTAGTGCCCTTCGGAAAATCGCAGTCG
GAGCGCAATGGTGCCATCTTCCACTGCCAGCACGGACCGGCTGAGTGCAA
GGGCAATCGCCTCCAGAGTTGCGTCATCAACAGCACCGCAAACCAGGCGG
CGCAGGTTAAATTCGTGGTGTGCCAGATGCTAGCTCCGGATTATTCCCGC
ATTGATCAGTGTGCCAATGAGGCAGGCCTGCTCACCGATGTGGTCCACTG
CCTGTCCAGCGAGACGGGCACCAAATTGCAGCTGCAGGCGGAGCTGGTGA
CCAAACAGTACAGCCCGAGCTTCATTCCCACCATCGTCTACAATGGCGTC
TTCGATCAGCAGCTGCAGGACCATTCGCTGCGCGATTTCCGCGGCACGGT
TTGTTATATGTTGCGTCAACAAAACTTGCTGCCCAGCAGCAGCACAATCT
GCCAGGCAAGCTTTCTAGACCAT
BO08150.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9427-RA | 642 | CG9427-PA | 1..639 | 17..655 | 3195 | 100 | Plus |
CG9427-RB | 639 | CG9427-PB | 98..636 | 117..655 | 2695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:33:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9427-RA | 847 | CG9427-RA | 141..779 | 17..655 | 3195 | 100 | Plus |
CG9427-RB | 719 | CG9427-RB | 113..651 | 117..655 | 2695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:33:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9625669..9625961 | 409..117 | 1465 | 100 | Minus |
3R | 32079331 | 3R | 9625425..9625567 | 549..407 | 715 | 100 | Minus |
3R | 32079331 | 3R | 9625225..9625332 | 655..548 | 540 | 100 | Minus |
3R | 32079331 | 3R | 9626235..9626336 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:33:22 has no hits.
BO08150.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:43 Download gff for
BO08150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-RA | 1..642 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:48 Download gff for
BO08150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-RA | 123..768 | 8..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:11 Download gff for
BO08150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-RA | 141..779 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:44 Download gff for
BO08150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-RA | 123..768 | 8..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:52 Download gff for
BO08150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9427-RA | 141..779 | 17..657 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:52 Download gff for
BO08150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9625223..9625332 | 548..657 | 98 | <- | Minus |
3R | 9625427..9625564 | 410..547 | 100 | <- | Minus |
3R | 9625669..9625959 | 119..409 | 100 | <- | Minus |
3R | 9626235..9626336 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:11 Download gff for
BO08150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5451149..5451286 | 410..547 | 100 | <- | Minus |
arm_3R | 5450945..5451054 | 548..657 | 98 | <- | Minus |
arm_3R | 5451391..5451681 | 119..409 | 100 | <- | Minus |
arm_3R | 5451957..5452058 | 17..118 | 100 | | Minus |
BO08150.pep Sequence
Translation from 16 to 673
> BO08150.pep
MTKLASTASLLLLVLSLGWAKLEEKPREKRQSNKLHITLLYESLCPDSRN
FMHQLGPVYEEFGDYIDILLVPFGKSQSERNGAIFHCQHGPAECKGNRLQ
SCVINSTANQAAQVKFVVCQMLAPDYSRIDQCANEAGLLTDVVHCLSSET
GTKLQLQAELVTKQYSPSFIPTIVYNGVFDQQLQDHSLRDFRGTVCYMLR
QQNLLPSSSTICQASFLDH
BO08150.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9427-PA | 213 | CG9427-PA | 1..213 | 1..213 | 1113 | 100 | Plus |
CG9427-PB | 212 | CG9427-PB | 22..212 | 23..213 | 956 | 95.3 | Plus |
GILT1-PA | 250 | CG9796-PA | 24..208 | 34..196 | 212 | 33.5 | Plus |
CG41378-PD | 205 | CG41378-PD | 1..190 | 13..196 | 195 | 30.1 | Plus |
CG41378-PC | 196 | CG41378-PC | 13..181 | 34..196 | 194 | 31.4 | Plus |