Clone Sequence Records
BO08151.3prime Sequence
893 bp (783 high quality bases) assembled on 2006-01-06
> BO08151.3prime
ATGGTCTAGAAAGCTTGCGCACTTTTTCTTATTGTTCTTTTTTCCTGCCT
TTTTGTCTGCTTCATTGATGAATTTGCAGATCTCGATGGAGGAAAATGAC
TTTGGTCTTTCAATTGGGGCTCCCAAAGCCCTGGACCAAATCAGCTGGGA
CAGAACTCCAAGCGCCCGAGAAACTCCGAAAAGAACTGTGTAGAACTTCA
GCTCCTTCAGACAGTAATGTTGCAGCAGGACGCCCGAATGGGCATCGACG
TTTGGATACGGATTCGCTACCTTGTTGAGCTTCTTGAGCACCTCTGGTAT
GATCTTCCACAGGCGGGTCACCAGCTTTACGCCTGGATCATCCTTGCAGT
GCTTCATGGCAAACTCGTTTTGCAGGACGAACCGAGGATCGGTGTCCCGA
AGGACAGCGTGTCCGTAGCCGGGAATGACCTGGCCCCCTTTCAGCGTATC
ATCGATGAACTTCTTTAGCTCTTCATCGGAGGGGTCATCGCCAATGGCCT
TCCTAAGCTTTGTCAGCCAAACCAGCACTTCCTGATTGGCCAAACCATGA
AGTGGCCCAGCCAGGCCGCACATGCTGGCCGAGAAAGACAGGAAGGGATC
GCTGAGCGCCGTTCCGACTAGGTGGCAAGCATGGGCGGAAACATTGCCGC
TCTCATGATCTGCATGCAGGATCATGTAGAGCCGCATAAGATCAACGAAA
TCCTTTTCGGGTAGTCCAAGCATGCGGCAGAAGTTGCCGGACCAGTCCTC
CTCATAGTTGACCTCCCGTGAACCTTCGCCATCCCCTAACACGTTAGAAT
AGATGGCAGCCGCCACGGTGGGCAGCATGGCGATGAGGGTCATTGAATCC
TCGTAGGAGTATTTCCAGTAGTCTGCACGTCTGGCCCCTTTGG
BO08151.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14740-PA | 1437 | CG14740-RA | 560..1434 | 893..19 | 4300 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:34:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14740-RA | 1600 | CG14740-RA | 658..1532 | 893..19 | 4330 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:34:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12061705..12062170 | 428..893 | 2285 | 99.4 | Plus |
3R | 32079331 | 3R | 12061195..12061609 | 19..433 | 2075 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:34:54 has no hits.
BO08151.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:39:27 Download gff for
BO08151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14740-PA | 560..1437 | 18..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:30:26 Download gff for
BO08151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14740-PA | 560..1437 | 18..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:50:24 Download gff for
BO08151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14740-RA | 658..1532 | 19..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:05:08 Download gff for
BO08151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14740-RA | 658..1532 | 19..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:05:08 Download gff for
BO08151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12061195..12061605 | 19..429 | 100 | <- | Plus |
3R | 12061707..12062170 | 430..893 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:50:24 Download gff for
BO08151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7886917..7887327 | 19..429 | 100 | <- | Plus |
arm_3R | 7887429..7887892 | 430..893 | 99 | | Plus |
BO08151.5prime Sequence
853 bp (814 high quality bases) assembled on 2006-01-06
> BO08151.5prime
GAAGTTATCAGTCGACATGCAAAAAACCAATAACTACAAAAGCTTCAAAA
TCTTCTTCAAGAACGTTCCATTTCGTTCATATCCCGACTGCAAGAATGGT
AAAGGTTCAGGCCTAAAAGCCAAGTTGGCAAAGAAAATTCCTATAGAACG
TGAAAAGTTTTTGGGTATAAAGTGTCTGCACGGCAAGAAGATAATTGGCC
AGATCAGTGTTAATAGCGTGATTGGAGGAATGCGAGGACTTCCACTTTTG
TTTTGCGAGACATCCAGCTTGGACAAAAACAAGGGTATTTATTACCGTGG
AAAACTGCTTAAGGATGTGTGTGCCAAACTGCCACGGGTGCAAGAGGGCA
CACAAGAGGGCACTCCCGAAGGATGTTTCTTCCTGCTGACCAGCGGATCG
ATGCCCACGAAGAAGGAGGCACAGGAAGTGACCAACGAGTGGCTGAAGCG
GGGCTCAGTTCCGCGCTACTGCCTCCGGATGATCGACTCCATGGACAAGC
GGGTGCATCCGATGGCCCAATTGTGCGCCGCCAGTGCCTGTCTCAATCCG
CAGAGCCAGTTCGTCGAGGCTTACACCAAAGGGGCCAGACGTGCAGACTA
CTGGAAATACTCCTACGAGGATTCAATGAACCTCATCGCCATGCTGCCCA
CCGTGGCGGCTGCCATCTATTCTAACGTGTTTAGGGATGGCGAAGGTTCA
CGGGAGGTCAACTATGAGGAGGACTGGTCCGGCAACTTCTGCCGCATGCT
TGGACTACCCGAAAAGGATTTCGTTGATCTTATGCGGCTCTACATGATCC
TGCATGCAGATCATGAGAGCGGCAATGTTTCCGCCCATGCTTGCCACCTA
GTC
BO08151.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14740-PA | 1437 | CG14740-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:42:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14740-RA | 1600 | CG14740-RA | 99..935 | 17..853 | 4185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:42:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12061893..12062482 | 853..264 | 2950 | 100 | Minus |
3R | 32079331 | 3R | 12062549..12062756 | 267..60 | 1040 | 100 | Minus |
3R | 32079331 | 3R | 12062802..12062846 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:42:52 has no hits.
BO08151.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:39:29 Download gff for
BO08151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14740-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:30:28 Download gff for
BO08151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14740-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:59:46 Download gff for
BO08151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14740-RA | 90..935 | 8..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:14:11 Download gff for
BO08151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14740-RA | 90..935 | 8..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:14:11 Download gff for
BO08151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12061893..12062478 | 268..853 | 100 | <- | Minus |
3R | 12062549..12062754 | 62..267 | 100 | <- | Minus |
3R | 12062802..12062855 | 8..61 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:59:46 Download gff for
BO08151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7887615..7888200 | 268..853 | 100 | <- | Minus |
arm_3R | 7888271..7888476 | 62..267 | 100 | <- | Minus |
arm_3R | 7888524..7888577 | 8..61 | 92 | | Minus |
BO08151.complete Sequence
1468 bp (1468 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631079
> BO08151.complete
GAAGTTATCAGTCGACATGCAAAAAACCAATAACTACAAAAGCTTCAAAA
TCTTCTTCAAGAACGTTCCATTTCGTTCATATCCCGACTGCAAGAATGGT
AAAGGTTCAGGCCTAAAAGCCAAGTTGGCAAAGAAAATTCCTATAGAACG
TGAAAAGTTTTTGGGTATAAAGTGTCTGCACGGCAAGAAGATAATTGGCC
AGATCAGTGTTAATAGCGTGATTGGAGGAATGCGAGGACTTCCACTTTTG
TTTTGCGAGACATCCAGCTTGGACAAAAACAAGGGTATTTATTACCGTGG
AAAACTGCTTAAGGATGTGTGTGCCAAACTGCCACGGGTGCAAGAGGGCA
CACAAGAGGGCACTCCCGAAGGATGTTTCTTCCTGCTGACCAGCGGATCG
ATGCCCACGAAGAAGGAGGCACAGGAAGTGACCAACGAGTGGCTGAAGCG
GGGCTCAGTTCCGCGCTACTGCCTCCGGATGATCGACTCCATGGACAAGC
GGGTGCATCCGATGGCCCAATTGTGCGCCGCCAGTGCCTGTCTCAATCCG
CAGAGCCAGTTCGTCGAGGCTTACACCAAAGGGGCCAGACGTGCAGACTA
CTGGAAATACTCCTACGAGGATTCAATGAACCTCATCGCCATGCTGCCCA
CCGTGGCGGCTGCCATCTATTCTAACGTGTTTAGGGATGGCGAAGGTTCA
CGGGAGGTCAACTATGAGGAGGACTGGTCCGGCAACTTCTGCCGCATGCT
TGGACTACCCGAAAAGGATTTCGTTGATCTTATGCGGCTCTACATGATCC
TGCATGCAGATCATGAGAGCGGCAATGTTTCCGCCCATGCTTGCCACCTA
GTCGGAACGGCGCTCAGCGATCCCTTCCTGTCTTTCTCGGCCAGCATGTG
CGGCCTGGCTGGGCCACTTCATGGTTTGGCCAATCAGGAAGTGCTGGTTT
GGCTGACAAAGCTTAGGAAGGCCATTGGCGATGACCCCTCCGATGAAGAG
CTAAAGAAGTTCATCGATGATACGCTGAAAGGGGGCCAGGTCATTCCCGG
CTACGGACACGCTGTCCTTCGGGACACCGATCCTCGGTTCGTCCTGCAAA
ACGAGTTTGCCATGAAGCACTGCAAGGATGATCCAGGCGTAAAGCTGGTG
ACCCGCCTGTGGAAGATCATACCAGAGGTGCTCAAGAAGCTCAACAAGGT
AGCGAATCCGTATCCAAACGTCGATGCCCATTCGGGCGTCCTGCTGCAAC
ATTACTGTCTGAAGGAGCTGAAGTTCTACACAGTTCTTTTCGGAGTTTCT
CGGGCGCTTGGAGTTCTGTCCCAGCTGATTTGGTCCAGGGCTTTGGGAGC
CCCAATTGAAAGACCAAAGTCATTTTCCTCCATCGAGATCTGCAAATTCA
TCAATGAAGCAGACAAAAAGGCAGGAAAAAAGAACAATAAGAAAAAGTGC
GCAAGCTTTCTAGACCAT
BO08151.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14740-RA | 1437 | CG14740-PA | 1..1434 | 17..1450 | 7170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14740-RA | 1600 | CG14740-RA | 99..1532 | 17..1450 | 7170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12061705..12062482 | 1041..264 | 3890 | 100 | Minus |
3R | 32079331 | 3R | 12061195..12061609 | 1450..1036 | 2075 | 100 | Minus |
3R | 32079331 | 3R | 12062549..12062756 | 267..60 | 1040 | 100 | Minus |
3R | 32079331 | 3R | 12062802..12062846 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:53:49 has no hits.
BO08151.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:48 Download gff for
BO08151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14740-RA | 1..1437 | 17..1451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:51 Download gff for
BO08151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14740-RA | 90..1532 | 8..1450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:35 Download gff for
BO08151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14740-RA | 99..1532 | 17..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:48 Download gff for
BO08151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14740-RA | 90..1532 | 8..1450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:52 Download gff for
BO08151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14740-RA | 99..1532 | 17..1452 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:52 Download gff for
BO08151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12061193..12061605 | 1040..1452 | 99 | <- | Minus |
3R | 12061707..12062478 | 268..1039 | 100 | <- | Minus |
3R | 12062549..12062754 | 62..267 | 100 | <- | Minus |
3R | 12062802..12062846 | 17..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:35 Download gff for
BO08151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7886915..7887327 | 1040..1452 | 99 | <- | Minus |
arm_3R | 7887429..7888200 | 268..1039 | 100 | <- | Minus |
arm_3R | 7888271..7888476 | 62..267 | 100 | <- | Minus |
arm_3R | 7888524..7888568 | 17..61 | 100 | | Minus |
BO08151.pep Sequence
Translation from 16 to 1468
> BO08151.pep
MQKTNNYKSFKIFFKNVPFRSYPDCKNGKGSGLKAKLAKKIPIEREKFLG
IKCLHGKKIIGQISVNSVIGGMRGLPLLFCETSSLDKNKGIYYRGKLLKD
VCAKLPRVQEGTQEGTPEGCFFLLTSGSMPTKKEAQEVTNEWLKRGSVPR
YCLRMIDSMDKRVHPMAQLCAASACLNPQSQFVEAYTKGARRADYWKYSY
EDSMNLIAMLPTVAAAIYSNVFRDGEGSREVNYEEDWSGNFCRMLGLPEK
DFVDLMRLYMILHADHESGNVSAHACHLVGTALSDPFLSFSASMCGLAGP
LHGLANQEVLVWLTKLRKAIGDDPSDEELKKFIDDTLKGGQVIPGYGHAV
LRDTDPRFVLQNEFAMKHCKDDPGVKLVTRLWKIIPEVLKKLNKVANPYP
NVDAHSGVLLQHYCLKELKFYTVLFGVSRALGVLSQLIWSRALGAPIERP
KSFSSIEICKFINEADKKAGKKNNKKKCASFLDH
BO08151.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14740-PA | 478 | CG14740-PA | 1..478 | 1..478 | 2534 | 100 | Plus |
kdn-PA | 464 | CG3861-PA | 31..464 | 30..464 | 1248 | 52.6 | Plus |
kdn-PB | 522 | CG3861-PB | 89..522 | 30..464 | 1248 | 52.6 | Plus |