Clone Sequence Records
BO08163.3prime Sequence
809 bp (759 high quality bases) assembled on 2006-01-06
> BO08163.3prime
ATGGTCTAGAAAGCTTGCAAGTGTGCGCATTTCATTTTTACAAATGCTGC
AAACGATCTTGCAAGGGACTCTATCTGAAACCGGAGTATCTACACGATGG
AAAACCGGTGTTCCGGCCTCAGGAAGAATCCTTTTCTTCGGACTCGCACG
GATATTGTTCGGCTTTCGCTCGCTTTCCACACAGCAGCAGAGGAGGAAGC
TCAGTGGCACTGCCTCGCCCTCCTCCAAAGTCTGTGGAAGATTTCGGTTA
CGGGTCTCTGGCAGCAAAAGACTAGCAAATCCTCCCAAGATTAGCAGGGC
TCCCATTACAATTAGCGGAAGTACGAGCATTTGCTGACCCATATGATTGA
TCATGGGAATCACTATAGGTCCCACCATGGATATTACCGAGCTAAAGCTC
ATGCCCAGTCCTCGCACCACCGTGGGATACAGTTCAGATGCCATGAGCGG
CAAGACTACAAAGGACGAGCTTATGCCCATCTTGCCCACGCAGTAGAGCA
GCAGTGTGATGTCTGGGTACAGAAATGTGGCCACGCAGGCGACTCCGCCC
ACCAGCATCGATATGAACAGGATCCAGCGCCTTCCGAAATAACTCAATCC
CGGCCAGAGTAGCAAATATGTTGGCAGTTCCACCGCCCCAGCCAGGAAGA
AGTTCCAGATCTCATCGCCTCCTAGCGCAGGAGCATAATAACTCAGTCCC
ACGTAGACACTGGTGTTGGCAAACCAAATAAGGGTTATGATCAGGGTCTT
CCGACGCATATTGGGTCCCCGAAACAAGTCCAATATCCCATAGTGGGTGG
TCATTGAAG
BO08163.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3790-PA | 1815 | CG3790-RA | 1022..1812 | 809..19 | 3955 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:56:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3790-RA | 1947 | CG3790-RA | 1104..1894 | 809..19 | 3955 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:56:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12873218..12873688 | 339..809 | 2355 | 100 | Plus |
| 2R | 25286936 | 2R | 12872840..12873161 | 19..340 | 1610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:56:28 has no hits.
BO08163.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:39:51 Download gff for
BO08163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3790-PA | 1022..1815 | 18..809 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:00 Download gff for
BO08163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3790-PA | 1022..1815 | 18..809 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:12:37 Download gff for
BO08163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3790-RA | 1104..1894 | 19..809 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:48 Download gff for
BO08163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3790-RA | 1104..1894 | 19..809 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:48 Download gff for
BO08163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12872840..12873160 | 19..339 | 100 | <- | Plus |
| 2R | 12873219..12873688 | 340..809 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:12:37 Download gff for
BO08163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8760345..8760665 | 19..339 | 100 | <- | Plus |
| arm_2R | 8760724..8761193 | 340..809 | 100 | | Plus |
BO08163.5prime Sequence
901 bp (876 high quality bases) assembled on 2006-01-06
> BO08163.5prime
GAAGTTATCAGTCGACATGGATTTCGACGAGGTGCTGCGGGAGGTGGGCT
CCTTTGGTCTCTACCAGAAGGTCATCATCTGTTCCGTTCTATTGCCCGCC
GCGCTGCCCTGTGCCTTCCACGCATATAGCCAGTTGTTCATAGCGGCCAC
ACCTCAGCACTTTTGTCGCGTTCCTGAGCTGGAGCCCTGGACGCAGGACT
ATGTGCAGCTTGTTAAGAACCTGAGCATTCCGCGTAATCGCAATGGAGCC
TATGCCGAGTGTTCCATGTACTCGAGAAATTACACCGATATAGTGCGCTA
TCTTGAGTATCGACCTCCTCCGGATTTGTTGCGACAACAGGCAGAGGATT
TGCTCAAGTTGCAGCCGGATACGACGCAGGTGGTGCCGTGCCAACATGGC
TGGCACTACGACAAGTCCATATACTCAAGTACGGTGGTTCAAGAGTGGAA
CCTGGTGTGCGACCGCAGCTTCCTTGTGACTTTGGCGCTTGTGGTCTTCG
GTGTTGGCGGATTGCTAGGTAACTATGTATTTGGATATCTAGTGGATCTG
TGGGGCAGGCGGCCATCCTTTTACGCTTATCTGCTGCTCGAGATCATTGC
CTGTGCGGCCAGTGCCTTTGCCTGGAACTATTACACTTGGTTGGGCCTGC
GCTTTGTGGTGGGACTGACGGTGCCAGCTATTCTGGCGAGTCCCTATGTA
CTGGCCATTGAGCTGGTGGGACCGGAGAGGAGAGTTTTTTGCACCATCGT
CTCGAATATCGCCTACTCCTTGGGCTTGGTGGTATTAGCCGGAGTTATCT
ATATCGTACGTGATTGGCGGGAACTCAGTTTGGCAGTGTCCATGCCTTTG
CTGATGCTTTTCTCCTGCTTCTTCGTGCTTCCGGAATCACACGATGGTTA
A
BO08163.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3790-PA | 1815 | CG3790-RA | 1..874 | 17..890 | 4370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3790-RA | 1947 | CG3790-RA | 80..968 | 14..901 | 4420 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12873824..12874282 | 901..444 | 2245 | 99.8 | Minus |
| 2R | 25286936 | 2R | 12874339..12874657 | 445..127 | 1595 | 100 | Minus |
| 2R | 25286936 | 2R | 12874818..12874933 | 129..14 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:39:27 has no hits.
BO08163.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:39:52 Download gff for
BO08163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3790-PA | 1..884 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:01 Download gff for
BO08163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3790-PA | 1..884 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:39:03 Download gff for
BO08163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3790-RA | 71..968 | 6..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:12 Download gff for
BO08163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3790-RA | 71..968 | 6..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:12 Download gff for
BO08163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12873824..12874280 | 446..901 | 99 | <- | Minus |
| 2R | 12874339..12874654 | 130..445 | 100 | <- | Minus |
| 2R | 12874818..12874942 | 6..129 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:39:03 Download gff for
BO08163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8761329..8761785 | 446..901 | 99 | <- | Minus |
| arm_2R | 8761844..8762159 | 130..445 | 100 | <- | Minus |
| arm_2R | 8762323..8762447 | 6..129 | 96 | | Minus |
BO08163.complete Sequence
1846 bp (1846 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631083
> BO08163.complete
GAAGTTATCAGTCGACATGGATTTCGACGAGGTGCTGCGGGAGGTGGGCT
CCTTTGGTCTCTACCAGAAGGTCATCATCTGTTCCGTTCTATTGCCCGCC
GCGCTGCCCTGTGCCTTCCACGCATATAGCCAGTTGTTCATAGCGGCCAC
ACCTCAGCACTTTTGTCGCGTTCCTGAGCTGGAGCCCTGGACGCAGGACT
ATGTGCAGCTTGTTAAGAACCTGAGCATTCCGCGTAATCGCAATGGAGCC
TATGCCGAGTGTTCCATGTACTCGAGAAATTACACCGATATAGTGCGCTA
TCTTGAGTATCGACCTCCTCCGGATTTGTTGCGACAACAGGCAGAGGATT
TGCTCAAGTTGCAGCCGGATACGACGCAGGTGGTGCCGTGCCAACATGGC
TGGCACTACGACAAGTCCATATACTCAAGTACGGTGGTTCAAGAGTGGAA
CCTGGTGTGCGACCGCAGCTTCCTTGTGACTTTGGCGCTTGTGGTCTTCG
GTGTTGGCGGATTGCTAGGTAACTATGTATTTGGATATCTAGTGGATCTG
TGGGGCAGGCGGCCATCCTTTTACGCTTATCTGCTGCTCGAGATCATTGC
CTGTGCGGCCAGTGCCTTTGCCTGGAACTATTACACTTGGTTGGGCCTGC
GCTTTGTGGTGGGACTGACGGTGCCAGCTATTCTGGCGAGTCCCTATGTA
CTGGCCATTGAGCTGGTGGGACCGGAGAGGAGAGTTTTTTGCACCATCGT
CTCGAATATCGCCTACTCCTTGGGCTTGGTGGTATTAGCCGGAGTTATCT
ATATCGTACGTGATTGGCGGGAACTCAGTTTGGCAGTGTCCATGCCTTTG
CTGATGCTTTTCTCCTGCTTCTTCGTGCTTCCGGAATCACCACGATGGTT
AATGGCCGTGGGAAAAACCAGGAGGGCCATTAAAATTCTCAAAGTAATGG
CCAGAGTGAATGGTGTGCGCGTAAATCGGGATTTTGTGGAACGGTTGCAG
CGAAAACTTGTCATCACAAGGGCTGCGGAAACCAAATCTTCAATGACCAC
CCACTATGGGATATTGGACTTGTTTCGGGGACCCAATATGCGTCGGAAGA
CCCTGATCATAACCCTTATTTGGTTTGCCAACACCAGTGTCTACGTGGGA
CTGAGTTATTATGCTCCTGCGCTAGGAGGCGATGAGATCTGGAACTTCTT
CCTGGCTGGGGCGGTGGAACTGCCAACATATTTGCTACTCTGGCCGGGAT
TGAGTTATTTCGGAAGGCGCTGGATCCTGTTCATATCGATGCTGGTGGGC
GGAGTCGCCTGCGTGGCCACATTTCTGTACCCAGACATCACACTGCTGCT
CTACTGCGTGGGCAAGATGGGCATAAGCTCGTCCTTTGTAGTCTTGCCGC
TCATGGCATCTGAACTGTATCCCACGGTGGTGCGAGGACTGGGCATGAGC
TTTAGCTCGGTAATATCCATGGTGGGACCTATAGTGATTCCCATGATCAA
TCATATGGGTCAGCAAATGCTCGTACTTCCGCTAATTGTAATGGGAGCCC
TGCTAATCTTGGGAGGATTTGCTAGTCTTTTGCTGCCAGAGACCCGTAAC
CGAAATCTTCCACAGACTTTGGAGGAGGGCGAGGCAGTGCCACTGAGCTT
CCTCCTCTGCTGCTGTGTGGAAAGCGAGCGAAAGCCGAACAATATCCGTG
CGAGTCCGAAGAAAAGGATTCTTCCTGAGGCCGGAACACCGGTTTTCCAT
CGTGTAGATACTCCGGTTTCAGATAGAGTCCCTTGCAAGATCGTTTGCAG
CATTTGTAAAAATGAAATGCGCACACTTGCAAGCTTTCTAGACCAT
BO08163.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:07:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3790-RA | 1815 | CG3790-PA | 1..1812 | 17..1828 | 9060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:07:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3790-RA | 1947 | CG3790-RA | 80..1894 | 14..1828 | 9075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:07:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12873218..12874282 | 1508..444 | 5325 | 100 | Minus |
| 2R | 25286936 | 2R | 12872840..12873161 | 1828..1507 | 1610 | 100 | Minus |
| 2R | 25286936 | 2R | 12874339..12874657 | 445..127 | 1595 | 100 | Minus |
| 2R | 25286936 | 2R | 12874818..12874933 | 129..14 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:07:23 has no hits.
BO08163.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:21 Download gff for
BO08163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3790-RA | 1..1815 | 17..1829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:53 Download gff for
BO08163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3790-RA | 72..1895 | 6..1828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:54 Download gff for
BO08163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3790-RA | 83..1894 | 17..1830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:21 Download gff for
BO08163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3790-RA | 72..1895 | 6..1828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:31 Download gff for
BO08163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3790-RA | 83..1894 | 17..1830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:31 Download gff for
BO08163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12874818..12874930 | 17..129 | 100 | | Minus |
| 2R | 12874339..12874654 | 130..445 | 100 | <- | Minus |
| 2R | 12872838..12873160 | 1508..1830 | 99 | <- | Minus |
| 2R | 12873219..12874280 | 446..1507 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:54 Download gff for
BO08163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8761844..8762159 | 130..445 | 100 | <- | Minus |
| arm_2R | 8762323..8762435 | 17..129 | 100 | | Minus |
| arm_2R | 8760343..8760665 | 1508..1830 | 99 | <- | Minus |
| arm_2R | 8760724..8761785 | 446..1507 | 100 | <- | Minus |
BO08163.pep Sequence
Translation from 16 to 1846
> BO08163.pep
MDFDEVLREVGSFGLYQKVIICSVLLPAALPCAFHAYSQLFIAATPQHFC
RVPELEPWTQDYVQLVKNLSIPRNRNGAYAECSMYSRNYTDIVRYLEYRP
PPDLLRQQAEDLLKLQPDTTQVVPCQHGWHYDKSIYSSTVVQEWNLVCDR
SFLVTLALVVFGVGGLLGNYVFGYLVDLWGRRPSFYAYLLLEIIACAASA
FAWNYYTWLGLRFVVGLTVPAILASPYVLAIELVGPERRVFCTIVSNIAY
SLGLVVLAGVIYIVRDWRELSLAVSMPLLMLFSCFFVLPESPRWLMAVGK
TRRAIKILKVMARVNGVRVNRDFVERLQRKLVITRAAETKSSMTTHYGIL
DLFRGPNMRRKTLIITLIWFANTSVYVGLSYYAPALGGDEIWNFFLAGAV
ELPTYLLLWPGLSYFGRRWILFISMLVGGVACVATFLYPDITLLLYCVGK
MGISSSFVVLPLMASELYPTVVRGLGMSFSSVISMVGPIVIPMINHMGQQ
MLVLPLIVMGALLILGGFASLLLPETRNRNLPQTLEEGEAVPLSFLLCCC
VESERKPNNIRASPKKRILPEAGTPVFHRVDTPVSDRVPCKIVCSICKNE
MRTLASFLDH
BO08163.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3790-PA | 604 | CG3790-PA | 1..604 | 1..604 | 3153 | 100 | Plus |
| CG9317-PC | 674 | CG9317-PC | 35..584 | 2..557 | 1108 | 40.8 | Plus |
| CG9317-PA | 674 | CG9317-PA | 35..584 | 2..557 | 1108 | 40.8 | Plus |
| Orct-PB | 548 | CG6331-PB | 1..519 | 1..539 | 876 | 35.7 | Plus |
| Orct-PA | 548 | CG6331-PA | 1..519 | 1..539 | 876 | 35.7 | Plus |
