Clone Sequence Records
BO08169.3prime Sequence
970 bp (887 high quality bases) assembled on 2006-01-06
> BO08169.3prime
ATGGTCTAGAAAGCTTGCGGGAAACGTATTTGATCCACGCATGGGAGGTG
GACCATCAACAGTCTCCTCGATGAGCAGCGGCGAGCTCCAGCGCATTAGG
AAGTAGGCAGATCCGGATTTATCGTTTGTCCCGGACAACCGATTTCCACC
AAAGGGAGTCAGCCCGTACGTGCTACCCGTGCATCGCTCATTCACGTAGA
GATTACTAGCGGACATTCGCAGTTGGTTCAGGCAGTGAAGGATAACCTCA
TCCTGACTTGCGAATATGGAGCCGGAGAGCGCGTATCTGGACTGATTGGC
GGCAAGCTTGAGAGCCTCACTGAAGGAATCGTCCGAATAGACGAACACCG
GCAAGAACGGTCCGCAGCAGGGCTCACACAGCAGTGGATCCAATGGATCC
GACACCCGGACAATCGTTGGATCAACGAATCTACCAGTGCTGTCATCACA
GCTGCCTCCGCACAACTGCTCCATGTTCTTGGTGCGCTGCAGTAGTTTCT
GCATCCGCCGGAAGTCATTTATATGCACCATCGCTCCTATATCCGTTTCC
GATTCGATGGGGTCTCCGATGGTCAGTTGCTCCGTGGCCTCCACCAACTC
CTCCCTGAGGCGTGGCCACATTGACGAGGGCACATACATCCGGGAGAGCG
AGTTGGCATACTGTCCGGCAAAGCCAAAGGCCGCCTGCACGGTGGCTGAG
ACGACAGATTCCACCTTAGCGCTGGCATGGACAAAATGAAAGTTCTGACC
CGGGCACTCGGCCACCAGACGAGGAAAACAGATGTATCGCTCCATTCGAT
CGCTCACCAGCTTGTGCACATGCCTGTAAAAAGCTGCACTCGCTTGAGTA
TTCAGTCCGGCAAAGTGCACGGCATCCGTGATGGTGTCCAAGAACAGACG
CTCGTTGGCCGGCACAAAGTTGATAACGCCGCTGGGCAAACCCGCCTCCT
GGAAAGCTCTGAAAATAAAT
BO08169.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6661-PA | 1746 | CG6661-RA | 796..1743 | 966..19 | 4715 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:48:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6661-RA | 1976 | CG6661-RA | 945..1892 | 966..19 | 4725 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:48:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14035720..14036667 | 966..19 | 4725 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:48:30 has no hits.
BO08169.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:03 Download gff for
BO08169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6661-PA | 791..1746 | 16..970 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:16 Download gff for
BO08169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6661-PA | 791..1746 | 16..970 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:09:51 Download gff for
BO08169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6661-RA | 940..1904 | 5..970 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:24:05 Download gff for
BO08169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6661-RA | 940..1904 | 5..970 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:24:05 Download gff for
BO08169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14035715..14036679 | 5..970 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:09:51 Download gff for
BO08169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14028815..14029779 | 5..970 | 99 | | Minus |
BO08169.5prime Sequence
949 bp (784 high quality bases) assembled on 2006-01-06
> BO08169.5prime
GAAGTTATCAGTCGACATGCTTAAGCTGGGACTCGCGGTCCCCACTCGAT
GGTCCTTCAGATGTCGTCGCCTTGGTGGAATGGCTATCATTAAAGGCGAG
ACAAAAATCTCCGTGGACAAGCAGAAAGCAGTCCAGCCGGAACAGGATGA
GGACCAACAAGAGGTCGAGCCGGATTCCCAGCCGGCGGAAGAAAATCCAA
GTATTCACAGGAACCAGAGAGTATTAGTTAATCATGCCATTCAGGAGATT
CAGCACAGGCCGTTGGAGGTGCCCACAATTATCGGCGATGATACAGTGTA
CACCATGGACACTCAGCGTGTTTGCTGCCCGCATCACCTGCAGACGAACT
TGGCTCACGTCTACTACGCCAATCGCAAGCAAATCGAGGCGGCAATTAAG
TCTGCTCTTTCGGCGCAAGGAACTTGGAGTCTAGTTCCCATCGCCCAGCG
ACTGGCCATTTGGCGACGTGCCGCCACCATTATCGAGGAGGACGAGCTGC
GGCTGAGAGTGTTCCTCATGATGACGCTGAGCAAAACCGCCGACGATGCG
ACGCGGGACATTCGGCGGCTACTCACATCGCTGAGGGCCAATGCTGACTA
TTTGGAGCATCTGTCCGAGCTGCGCTTTGAGATCCAGGGTGATATGAATG
TATTCCCCAGCTTTCATTTGCGACCCATGGATGGATTTGTGGCCGCACTG
GCACCATTTGAATCGGTGGCCTTGTCATCCAGCTTGGCCCTCTGTCCGGC
GCTCATGGGCAACACGGTGTTGTGGAATCCCTCATTGGAAGTGGCACCAG
TGAGCTATTTAATTTTCAGAGCCTTCCAGGAGGCGGGTTTGCCCAGCGGC
GTTATCAACTTTGTGCCGGCCAACGAGCGTCTGTTCTTGGACACCATCAC
GGATGCCGTGCACTTTGCCGGACTGAATACTCAAGCGAGTGCAGCTTTT
BO08169.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6661-PA | 1746 | CG6661-RA | 1..933 | 17..949 | 4665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:48:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6661-RA | 1976 | CG6661-RA | 150..1082 | 17..949 | 4665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:48:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14034925..14035857 | 17..949 | 4665 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:48:32 has no hits.
BO08169.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:03 Download gff for
BO08169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6661-PA | 1..933 | 17..949 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:17 Download gff for
BO08169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6661-PA | 1..933 | 17..949 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:09:53 Download gff for
BO08169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6661-RA | 146..1082 | 10..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:24:07 Download gff for
BO08169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6661-RA | 146..1082 | 10..949 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:24:07 Download gff for
BO08169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14034921..14035857 | 10..949 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:09:53 Download gff for
BO08169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14028021..14028957 | 10..949 | 99 | | Plus |
BO08169.complete Sequence
1777 bp (1777 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631084
> BO08169.complete
GAAGTTATCAGTCGACATGCTTAAGCTGGGACTCGCGGTCCCCACTCGAT
GGTCCTTCAGATGTCGTCGCCTTGGTGGAATGGCTATCATTAAAGGCGAG
ACAAAAATCTCCGTGGACAAGCAGAAAGCAGTCCAGCCGGAACAGGATGA
GGACCAACAAGAGGTCGAGCCGGATTCCCAGCCGGCGGAAGAAAATCCAA
GTATTCACAGGAACCAGAGAGTATTAGTTAATCATGCCATTCAGGAGATT
CAGCACAGGCCGTTGGAGGTGCCCACAATTATCGGCGATGATACAGTGTA
CACCATGGACACTCAGCGTGTTTGCTGCCCGCATCACCTGCAGACGAACT
TGGCTCACGTCTACTACGCCAATCGCAAGCAAATCGAGGCGGCAATTAAG
TCTGCTCTTTCGGCGCAAGGAACTTGGAGTCTAGTTCCCATCGCCCAGCG
ACTGGCCATTTGGCGACGTGCCGCCACCATTATCGAGGAGGACGAGCTGC
GGCTGAGAGTGTTCCTCATGATGACGCTGAGCAAAACCGCCGACGATGCG
ACGCGGGACATTCGGCGGCTACTCACATCGCTGAGGGCCAATGCTGACTA
TTTGGAGCATCTGTCCGAGCTGCGCTTTGAGATCCAGGGTGATATGAATG
TATTCCCCAGCTTTCATTTGCGACCCATGGATGGATTTGTGGCCGCACTG
GCACCATTTGAATCGGTGGCCTTGTCATCCAGCTTGGCCCTCTGTCCGGC
GCTCATGGGCAACACGGTGTTGTGGAATCCCTCATTGGAAGTGGCACCAG
TGAGCTATTTAATTTTCAGAGCCTTCCAGGAGGCGGGTTTGCCCAGCGGC
GTTATCAACTTTGTGCCGGCCAACGAGCGTCTGTTCTTGGACACCATCAC
GGATGCCGTGCACTTTGCCGGACTGAATACTCAAGCGAGTGCAGCTTTTT
ACAGGCATGTGCACAAGCTGGTGAGCGATCGAATGGAGCGATACATCTGT
TTTCCTCGTCTGGTGGCCGAGTGCCCGGGTCAGAACTTTCATTTTGTCCA
TGCCAGCGCTAAGGTGGAATCTGTCGTCTCAGCCACCGTGCAGGCGGCCT
TTGGCTTTGCCGGACAGTATGCCAACTCGCTCTCCCGGATGTATGTGCCC
TCGTCAATGTGGCCACGCCTCAGGGAGGAGTTGGTGGAGGCCACGGAGCA
ACTGACCATCGGAGACCCCATCGAATCGGAAACGGATATAGGAGCGATGG
TGCATATAAATGACTTCCGGCGGATGCAGAAACTACTGCAGCGCACCAAG
AACATGGAGCAGTTGTGCGGAGGCAGCTGTGATGACAGCACTGGTAGATT
CGTTGATCCAACGATTGTCCGGGTGTCGGATCCATTGGATCCACTGCTGT
GTGAGCCCTGCTGCGGACCGTTCTTGCCGGTGTTCGTCTATTCGGACGAT
TCCTTCAGTGAGGCTCTCAAGCTTGCCGCCAATCAGTCCAGATACGCGCT
CTCCGGCTCCATATTCGCAAGTCAGGATGAGGTTATCCTTCACTGCCTGA
ACCAACTGCGAATGTCCGCTAGTAATCTCTACGTGAATGAGCGATGCACG
GGTAGCACGTACGGGCTGACTCCCTTTGGTGGAAATCGGTTGTCCGGGAC
AAACGATAAATCCGGATCTGCCTACTTCCTAATGCGCTGGAGCTCGCCGC
TGCTCATCGAGGAGACTGTTGATGGTCCACCTCCCATGCGTGGATCAAAT
ACGTTTCCCGCAAGCTTTCTAGACCAT
BO08169.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6661-RA | 1746 | CG6661-PA | 1..1743 | 17..1759 | 8715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6661-RA | 1976 | CG6661-RA | 150..1892 | 17..1759 | 8715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:09:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14034925..14036667 | 17..1759 | 8715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:09:07 has no hits.
BO08169.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:55 Download gff for
BO08169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6661-RA | 146..1904 | 10..1773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:23 Download gff for
BO08169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6661-RA | 150..1892 | 17..1761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:22 Download gff for
BO08169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6661-RA | 146..1904 | 10..1773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:53 Download gff for
BO08169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6661-RA | 150..1892 | 17..1761 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:53 Download gff for
BO08169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14034925..14036667 | 17..1761 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:23 Download gff for
BO08169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14028025..14029767 | 17..1761 | 99 | | Plus |
BO08169.pep Sequence
Translation from 16 to 1777
> BO08169.pep
MLKLGLAVPTRWSFRCRRLGGMAIIKGETKISVDKQKAVQPEQDEDQQEV
EPDSQPAEENPSIHRNQRVLVNHAIQEIQHRPLEVPTIIGDDTVYTMDTQ
RVCCPHHLQTNLAHVYYANRKQIEAAIKSALSAQGTWSLVPIAQRLAIWR
RAATIIEEDELRLRVFLMMTLSKTADDATRDIRRLLTSLRANADYLEHLS
ELRFEIQGDMNVFPSFHLRPMDGFVAALAPFESVALSSSLALCPALMGNT
VLWNPSLEVAPVSYLIFRAFQEAGLPSGVINFVPANERLFLDTITDAVHF
AGLNTQASAAFYRHVHKLVSDRMERYICFPRLVAECPGQNFHFVHASAKV
ESVVSATVQAAFGFAGQYANSLSRMYVPSSMWPRLREELVEATEQLTIGD
PIESETDIGAMVHINDFRRMQKLLQRTKNMEQLCGGSCDDSTGRFVDPTI
VRVSDPLDPLLCEPCCGPFLPVFVYSDDSFSEALKLAANQSRYALSGSIF
ASQDEVILHCLNQLRMSASNLYVNERCTGSTYGLTPFGGNRLSGTNDKSG
SAYFLMRWSSPLLIEETVDGPPPMRGSNTFPASFLDH
BO08169.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6661-PA | 581 | CG6661-PA | 1..581 | 1..581 | 3019 | 100 | Plus |
| P5CDh1-PE | 574 | CG7145-PE | 72..560 | 84..567 | 964 | 39.9 | Plus |
| P5CDh1-PF | 574 | CG7145-PF | 72..560 | 84..567 | 964 | 39.9 | Plus |
| P5CDh1-PD | 574 | CG7145-PD | 72..560 | 84..567 | 964 | 39.9 | Plus |
| P5CDh1-PB | 574 | CG7145-PB | 72..560 | 84..567 | 964 | 39.9 | Plus |
