Clone BO08170 Report

Search the DGRC for BO08170

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:81
Well:70
Vector:pDNR-Dual
Associated Gene/Transcriptinx7-RB
Protein status:BO08170.pep: validated full length
Sequenced Size:1117

Clone Sequence Records

BO08170.3prime Sequence

950 bp (843 high quality bases) assembled on 2006-01-06

> BO08170.3prime
ATGGTCTAGAAAGCTTGCTACAGGTAACTTTGCCATATCCGAAGTCGATG
GCCCTTGGGCTCCGCCGGCAGAGGGCGAGCCATTGCGTCGAAGGTGCAAG
AGTGGTGAATCAATCGTATCCAGACCACTGAGCTCCGGATAACGGTTCTT
AGCGGGCGTGGGCGGTGCCTCTCGATAGGCATTGACATCGTTATCGTGAT
CGGGATTGGGGAACTCACTAGCCAAATGATAGATAACCTTCTTGAATAGG
AACTCCGAAAGGTTGGAGCGCAGGAAGAAAAGGAACATCCAGTTGGAAAA
GTTACACTTATCAATTACCGCCAATAATTCGTTTTCGTCCAGTTGGCCAG
GCTTGGCCCAATAGAGAGACCAGCGGGTAAATGTGACATTTCTGTAGAAG
CACAGGGTTAAAATTCTCCAAAGCAGTCCCAGAACAGTAACAATCAAAAG
GAAGGCGTACCAGAACCACAGAATAATGTAGATCTTCTCGTTCATGATGT
TCAGCGCCATCACGCAAAGGGCATCGTGCATTTGAATGGAGCCAGAGTCA
CCAAATTTGTGGAACTTGCACTTGGTAATCTTCGGGAATACTAGATCCAA
AACGCTCAGCTCGTCGGACCACCGATTTTTCAGGGCATGTGGTCCCAGTG
TGAGGAATTGACCGCCCAAAAAACGGTTGGTCCATGTGATCTGCAGCAGA
AGATTAATCAGATTGAGCACCTCCGCGAAGACCAAGTGGGCACCCCACGA
TTGATTCAGCCGCATCCGGTCGATCATTGTGCGACGAATGTCCTTGACCC
GCTCCTCCGCCTCCGCCATCGAGGGAATGTTCAGCTTGCCGATACGCAGA
CTATCGTTCTTCAGGTACCTCGTTAGACCCACATTTCGAAGGCAAAGACC
AGGGCCTTGATCCGGCCGCCCTCCCACTCTTCCACGGGCATGGGGGATGT

BO08170.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG2977-PB 1086 inx7-RB 209..1083 893..19 4325 99.7 Minus
CG2977-PA 1317 inx7-RA 440..1314 893..19 4325 99.7 Minus
CG2977-PB 1086 inx7-RB 175..208 926..893 170 100 Minus
CG2977-PA 1317 inx7-RA 406..439 926..893 170 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
Inx7-RA 1634 CG2977-RA 579..1513 950..19 4555 99.4 Minus
Inx7-RB 1690 CG2977-RB 635..1569 950..19 4555 99.4 Minus
Inx3-RC 1652 CG1448-RC 864..981 576..459 185 77.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6992173..6992737 389..950 2630 98.9 Plus
X 23542271 X 6991733..6992102 19..388 1850 100 Plus
Blast to na_te.dros performed on 2015-02-13 16:36:28 has no hits.

BO08170.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:04 Download gff for BO08170.3prime
Subject Subject Range Query Range Percent Splice Strand
inx7-PA 380..1317 15..950 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:18 Download gff for BO08170.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2977-PA 380..1317 15..950 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:14:05 Download gff for BO08170.3prime
Subject Subject Range Query Range Percent Splice Strand
Inx7-RB 635..1575 10..950 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:24:13 Download gff for BO08170.3prime
Subject Subject Range Query Range Percent Splice Strand
Inx7-RB 635..1575 10..950 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:24:13 Download gff for BO08170.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6991727..6992102 10..388 98 <- Plus
X 6992173..6992737 389..950 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:14:05 Download gff for BO08170.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6885760..6886135 10..388 98 <- Plus
arm_X 6886206..6886770 389..950 98   Plus

BO08170.5prime Sequence

916 bp (755 high quality bases) assembled on 2006-01-06

> BO08170.5prime
GAAGTTATCAGTCGACATGGTACGTGACCAGAACCAAACTGCCTACAGGC
CGGGAAGTGAGCCACCTGGTATAGGGGCATTCGATCCCGAAAAGGACACG
ATCAAGCGGCATGCATACTACCAGTGGGTGCCCTTTGTCCTGTTCTTCCA
GGCTCTCTGCTTCTACATTCCCCATGCCCTGTGGAAGAGTTGGGAGGGCG
GCCGGATCAAGGCCCTGGTCTTTGGCCTTCGAATGGTGGGTCTAACGAGG
TACCTGAAGAACGATAGTCTGCGTATCGGCAAGCTGAACATTCCCTCGAT
GGCGGAGGCGGAGGAGCGGGTCAAGGACATTCGTCGCACAATGATCGACC
GGATGCGGCTGAATCAATCGTGGGGTGCCCACTTGGTCTTCGCGGAGGTG
CTCAATCTGATTAATCTTCTGCTGCAGATCACATGGACCAACCGTTTTTT
GGGCGGTCAATTCCTCACACTGGGACCACATGCCCTGAAAAATCGGTGGT
CCGACGAGCTGAGCGTTTTGGATCTAGTATTCCCGAAGATTACCAAGTGC
AAGTTCCACAAATTTGGTGACTCTGGCTCCATTCAAATGCACGATGCCCT
TTGCGTGATGGCGCTGAACATCATGAACGAGAAGATCTACATTATTCTGT
GGTTCTGGTACGCCTTCCTTTTGATTGTTACTGTTCTGGGACTGCTTTGG
AGAATTTTAACCCTGTGCTTCTACAGAAATGTCACATTTACCCGCTGGTC
TCTCTATTGGGCCAAGCCTGGCCAACTGGACGAAAACGAATTATTGGCGG
TAATTGATAAGTGTAACTTTTCCAACTGGATGTTCCTTTTCTTCCTGCGC
TCCACCTTTCGGAGTTCTATTCAAGAAGGTTATCTATCATTTGGCTAGTG
AGTTCCCCAATCCCGA

BO08170.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG2977-PB 1086 inx7-RB 1..838 17..854 4190 100 Plus
CG2977-PA 1317 inx7-RA 233..1069 18..854 4185 100 Plus
CG2977-PB 1086 inx7-RB 853..902 867..916 250 100 Plus
CG2977-PA 1317 inx7-RA 1084..1133 867..916 250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:44:37
Subject Length Description Subject Range Query Range Score Percent Strand
Inx7-RB 1690 CG2977-RB 487..1388 17..916 4460 99.8 Plus
Inx7-RA 1634 CG2977-RA 432..1332 18..916 4455 99.8 Plus
Inx3-RC 1652 CG1448-RC 864..981 542..659 185 77.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6992173..6992883 729..19 3555 100 Minus
X 23542271 X 6991914..6992102 916..730 845 98.9 Minus
Blast to na_te.dros performed on 2015-02-13 15:44:36 has no hits.

BO08170.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:05 Download gff for BO08170.5prime
Subject Subject Range Query Range Percent Splice Strand
inx7-PB 1..901 17..915 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:20 Download gff for BO08170.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2977-PB 1..901 17..915 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:59:51 Download gff for BO08170.5prime
Subject Subject Range Query Range Percent Splice Strand
Inx7-RB 481..1387 9..915 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:22:10 Download gff for BO08170.5prime
Subject Subject Range Query Range Percent Splice Strand
Inx7-RB 481..1387 9..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:22:10 Download gff for BO08170.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6991915..6992102 730..915 98 <- Minus
X 6992173..6992883 19..729 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:59:51 Download gff for BO08170.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6885948..6886135 730..915 98 <- Minus
arm_X 6886206..6886916 19..729 100   Minus

BO08170.complete Sequence

1117 bp (1117 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631085

> BO08170.complete
GAAGTTATCAGTCGACATGGTACGTGACCAGAACCAAACTGCCTACAGGC
CGGGAAGTGAGCCACCTGGTATAGGGGCATTCGATCCCGAAAAGGACACG
ATCAAGCGGCATGCATACTACCAGTGGGTGCCCTTTGTCCTGTTCTTCCA
GGCTCTCTGCTTCTACATTCCCCATGCCCTGTGGAAGAGTTGGGAGGGCG
GCCGGATCAAGGCCCTGGTCTTTGGCCTTCGAATGGTGGGTCTAACGAGG
TACCTGAAGAACGATAGTCTGCGTATCGGCAAGCTGAACATTCCCTCGAT
GGCGGAGGCGGAGGAGCGGGTCAAGGACATTCGTCGCACAATGATCGACC
GGATGCGGCTGAATCAATCGTGGGGTGCCCACTTGGTCTTCGCGGAGGTG
CTCAATCTGATTAATCTTCTGCTGCAGATCACATGGACCAACCGTTTTTT
GGGCGGTCAATTCCTCACACTGGGACCACATGCCCTGAAAAATCGGTGGT
CCGACGAGCTGAGCGTTTTGGATCTAGTATTCCCGAAGATTACCAAGTGC
AAGTTCCACAAATTTGGTGACTCTGGCTCCATTCAAATGCACGATGCCCT
TTGCGTGATGGCGCTGAACATCATGAACGAGAAGATCTACATTATTCTGT
GGTTCTGGTACGCCTTCCTTTTGATTGTTACTGTTCTGGGACTGCTTTGG
AGAATTTTAACCCTGTGCTTCTACAGAAATGTCACATTTACCCGCTGGTC
TCTCTATTGGGCCAAGCCTGGCCAACTGGACGAAAACGAATTATTGGCGG
TAATTGATAAGTGTAACTTTTCCAACTGGATGTTCCTTTTCTTCCTGCGC
TCCAACCTTTCGGAGTTCCTATTCAAGAAGGTTATCTATCATTTGGCTAG
TGAGTTCCCCAATCCCGATCACGATAACGATGTCAATGCCTATCGAGAGG
CACCGCCCACGCCCGCTAAGAACCGTTATCCGGAGCTCAGTGGTCTGGAT
ACGATTGATTCACCACTCTTGCACCTTCGACGCAATGGCTCGCCCTCTGC
CGGCGGAGCCCAAGGGCCATCGACTTCGGATATGGCAAAGTTACCTGTAG
CAAGCTTTCTAGACCAT

BO08170.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
Inx7-RB 1086 CG2977-PB 1..1083 17..1099 5415 100 Plus
Inx7-RA 1317 CG2977-PA 233..1314 18..1099 5410 100 Plus
Inx3-RC 1188 CG1448-PC 724..841 542..659 185 77.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
Inx7-RB 1690 CG2977-RB 487..1569 17..1099 5415 100 Plus
Inx7-RA 1634 CG2977-RA 432..1513 18..1099 5410 100 Plus
Inx3-RC 1652 CG1448-RC 864..981 542..659 185 77.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6992173..6992883 729..19 3555 100 Minus
X 23542271 X 6991733..6992102 1099..730 1850 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:59:22 has no hits.

BO08170.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:34 Download gff for BO08170.complete
Subject Subject Range Query Range Percent Splice Strand
inx7-RB 1..1086 17..1103 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:35 Download gff for BO08170.complete
Subject Subject Range Query Range Percent Splice Strand
inx7-RB 481..1575 9..1108 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:33 Download gff for BO08170.complete
Subject Subject Range Query Range Percent Splice Strand
Inx7-RB 487..1569 17..1101 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:34 Download gff for BO08170.complete
Subject Subject Range Query Range Percent Splice Strand
inx7-RB 481..1575 9..1108 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:01 Download gff for BO08170.complete
Subject Subject Range Query Range Percent Splice Strand
Inx7-RB 487..1569 17..1101 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:01 Download gff for BO08170.complete
Subject Subject Range Query Range Percent Splice Strand
X 6991731..6992102 730..1101 99 <- Minus
X 6992173..6992884 17..729 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:33 Download gff for BO08170.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6885764..6886135 730..1101 99 <- Minus
arm_X 6886206..6886917 17..729 99   Minus

BO08170.pep Sequence

Translation from 16 to 1117

> BO08170.pep
MVRDQNQTAYRPGSEPPGIGAFDPEKDTIKRHAYYQWVPFVLFFQALCFY
IPHALWKSWEGGRIKALVFGLRMVGLTRYLKNDSLRIGKLNIPSMAEAEE
RVKDIRRTMIDRMRLNQSWGAHLVFAEVLNLINLLLQITWTNRFLGGQFL
TLGPHALKNRWSDELSVLDLVFPKITKCKFHKFGDSGSIQMHDALCVMAL
NIMNEKIYIILWFWYAFLLIVTVLGLLWRILTLCFYRNVTFTRWSLYWAK
PGQLDENELLAVIDKCNFSNWMFLFFLRSNLSEFLFKKVIYHLASEFPNP
DHDNDVNAYREAPPTPAKNRYPELSGLDTIDSPLLHLRRNGSPSAGGAQG
PSTSDMAKLPVASFLDH

BO08170.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
Inx7-PB 361 CG2977-PB 1..361 1..361 1940 100 Plus
Inx7-PA 438 CG2977-PA 78..438 1..361 1936 99.7 Plus
Inx2-PD 367 CG4590-PD 91..358 17..302 514 37.7 Plus
Inx2-PC 367 CG4590-PC 91..358 17..302 514 37.7 Plus
Inx2-PB 367 CG4590-PB 91..358 17..302 514 37.7 Plus