Clone Sequence Records
BO08170.3prime Sequence
950 bp (843 high quality bases) assembled on 2006-01-06
> BO08170.3prime
ATGGTCTAGAAAGCTTGCTACAGGTAACTTTGCCATATCCGAAGTCGATG
GCCCTTGGGCTCCGCCGGCAGAGGGCGAGCCATTGCGTCGAAGGTGCAAG
AGTGGTGAATCAATCGTATCCAGACCACTGAGCTCCGGATAACGGTTCTT
AGCGGGCGTGGGCGGTGCCTCTCGATAGGCATTGACATCGTTATCGTGAT
CGGGATTGGGGAACTCACTAGCCAAATGATAGATAACCTTCTTGAATAGG
AACTCCGAAAGGTTGGAGCGCAGGAAGAAAAGGAACATCCAGTTGGAAAA
GTTACACTTATCAATTACCGCCAATAATTCGTTTTCGTCCAGTTGGCCAG
GCTTGGCCCAATAGAGAGACCAGCGGGTAAATGTGACATTTCTGTAGAAG
CACAGGGTTAAAATTCTCCAAAGCAGTCCCAGAACAGTAACAATCAAAAG
GAAGGCGTACCAGAACCACAGAATAATGTAGATCTTCTCGTTCATGATGT
TCAGCGCCATCACGCAAAGGGCATCGTGCATTTGAATGGAGCCAGAGTCA
CCAAATTTGTGGAACTTGCACTTGGTAATCTTCGGGAATACTAGATCCAA
AACGCTCAGCTCGTCGGACCACCGATTTTTCAGGGCATGTGGTCCCAGTG
TGAGGAATTGACCGCCCAAAAAACGGTTGGTCCATGTGATCTGCAGCAGA
AGATTAATCAGATTGAGCACCTCCGCGAAGACCAAGTGGGCACCCCACGA
TTGATTCAGCCGCATCCGGTCGATCATTGTGCGACGAATGTCCTTGACCC
GCTCCTCCGCCTCCGCCATCGAGGGAATGTTCAGCTTGCCGATACGCAGA
CTATCGTTCTTCAGGTACCTCGTTAGACCCACATTTCGAAGGCAAAGACC
AGGGCCTTGATCCGGCCGCCCTCCCACTCTTCCACGGGCATGGGGGATGT
BO08170.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2977-PB | 1086 | inx7-RB | 209..1083 | 893..19 | 4325 | 99.7 | Minus |
CG2977-PA | 1317 | inx7-RA | 440..1314 | 893..19 | 4325 | 99.7 | Minus |
CG2977-PB | 1086 | inx7-RB | 175..208 | 926..893 | 170 | 100 | Minus |
CG2977-PA | 1317 | inx7-RA | 406..439 | 926..893 | 170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:36:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx7-RA | 1634 | CG2977-RA | 579..1513 | 950..19 | 4555 | 99.4 | Minus |
Inx7-RB | 1690 | CG2977-RB | 635..1569 | 950..19 | 4555 | 99.4 | Minus |
Inx3-RC | 1652 | CG1448-RC | 864..981 | 576..459 | 185 | 77.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:36:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6992173..6992737 | 389..950 | 2630 | 98.9 | Plus |
X | 23542271 | X | 6991733..6992102 | 19..388 | 1850 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:36:28 has no hits.
BO08170.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:04 Download gff for
BO08170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx7-PA | 380..1317 | 15..950 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:18 Download gff for
BO08170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2977-PA | 380..1317 | 15..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:14:05 Download gff for
BO08170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx7-RB | 635..1575 | 10..950 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:24:13 Download gff for
BO08170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx7-RB | 635..1575 | 10..950 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:24:13 Download gff for
BO08170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6991727..6992102 | 10..388 | 98 | <- | Plus |
X | 6992173..6992737 | 389..950 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:14:05 Download gff for
BO08170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6885760..6886135 | 10..388 | 98 | <- | Plus |
arm_X | 6886206..6886770 | 389..950 | 98 | | Plus |
BO08170.5prime Sequence
916 bp (755 high quality bases) assembled on 2006-01-06
> BO08170.5prime
GAAGTTATCAGTCGACATGGTACGTGACCAGAACCAAACTGCCTACAGGC
CGGGAAGTGAGCCACCTGGTATAGGGGCATTCGATCCCGAAAAGGACACG
ATCAAGCGGCATGCATACTACCAGTGGGTGCCCTTTGTCCTGTTCTTCCA
GGCTCTCTGCTTCTACATTCCCCATGCCCTGTGGAAGAGTTGGGAGGGCG
GCCGGATCAAGGCCCTGGTCTTTGGCCTTCGAATGGTGGGTCTAACGAGG
TACCTGAAGAACGATAGTCTGCGTATCGGCAAGCTGAACATTCCCTCGAT
GGCGGAGGCGGAGGAGCGGGTCAAGGACATTCGTCGCACAATGATCGACC
GGATGCGGCTGAATCAATCGTGGGGTGCCCACTTGGTCTTCGCGGAGGTG
CTCAATCTGATTAATCTTCTGCTGCAGATCACATGGACCAACCGTTTTTT
GGGCGGTCAATTCCTCACACTGGGACCACATGCCCTGAAAAATCGGTGGT
CCGACGAGCTGAGCGTTTTGGATCTAGTATTCCCGAAGATTACCAAGTGC
AAGTTCCACAAATTTGGTGACTCTGGCTCCATTCAAATGCACGATGCCCT
TTGCGTGATGGCGCTGAACATCATGAACGAGAAGATCTACATTATTCTGT
GGTTCTGGTACGCCTTCCTTTTGATTGTTACTGTTCTGGGACTGCTTTGG
AGAATTTTAACCCTGTGCTTCTACAGAAATGTCACATTTACCCGCTGGTC
TCTCTATTGGGCCAAGCCTGGCCAACTGGACGAAAACGAATTATTGGCGG
TAATTGATAAGTGTAACTTTTCCAACTGGATGTTCCTTTTCTTCCTGCGC
TCCACCTTTCGGAGTTCTATTCAAGAAGGTTATCTATCATTTGGCTAGTG
AGTTCCCCAATCCCGA
BO08170.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2977-PB | 1086 | inx7-RB | 1..838 | 17..854 | 4190 | 100 | Plus |
CG2977-PA | 1317 | inx7-RA | 233..1069 | 18..854 | 4185 | 100 | Plus |
CG2977-PB | 1086 | inx7-RB | 853..902 | 867..916 | 250 | 100 | Plus |
CG2977-PA | 1317 | inx7-RA | 1084..1133 | 867..916 | 250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:44:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx7-RB | 1690 | CG2977-RB | 487..1388 | 17..916 | 4460 | 99.8 | Plus |
Inx7-RA | 1634 | CG2977-RA | 432..1332 | 18..916 | 4455 | 99.8 | Plus |
Inx3-RC | 1652 | CG1448-RC | 864..981 | 542..659 | 185 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6992173..6992883 | 729..19 | 3555 | 100 | Minus |
X | 23542271 | X | 6991914..6992102 | 916..730 | 845 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:44:36 has no hits.
BO08170.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:05 Download gff for
BO08170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx7-PB | 1..901 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:20 Download gff for
BO08170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2977-PB | 1..901 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:59:51 Download gff for
BO08170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx7-RB | 481..1387 | 9..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:22:10 Download gff for
BO08170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx7-RB | 481..1387 | 9..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:22:10 Download gff for
BO08170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6991915..6992102 | 730..915 | 98 | <- | Minus |
X | 6992173..6992883 | 19..729 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:59:51 Download gff for
BO08170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6885948..6886135 | 730..915 | 98 | <- | Minus |
arm_X | 6886206..6886916 | 19..729 | 100 | | Minus |
BO08170.complete Sequence
1117 bp (1117 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631085
> BO08170.complete
GAAGTTATCAGTCGACATGGTACGTGACCAGAACCAAACTGCCTACAGGC
CGGGAAGTGAGCCACCTGGTATAGGGGCATTCGATCCCGAAAAGGACACG
ATCAAGCGGCATGCATACTACCAGTGGGTGCCCTTTGTCCTGTTCTTCCA
GGCTCTCTGCTTCTACATTCCCCATGCCCTGTGGAAGAGTTGGGAGGGCG
GCCGGATCAAGGCCCTGGTCTTTGGCCTTCGAATGGTGGGTCTAACGAGG
TACCTGAAGAACGATAGTCTGCGTATCGGCAAGCTGAACATTCCCTCGAT
GGCGGAGGCGGAGGAGCGGGTCAAGGACATTCGTCGCACAATGATCGACC
GGATGCGGCTGAATCAATCGTGGGGTGCCCACTTGGTCTTCGCGGAGGTG
CTCAATCTGATTAATCTTCTGCTGCAGATCACATGGACCAACCGTTTTTT
GGGCGGTCAATTCCTCACACTGGGACCACATGCCCTGAAAAATCGGTGGT
CCGACGAGCTGAGCGTTTTGGATCTAGTATTCCCGAAGATTACCAAGTGC
AAGTTCCACAAATTTGGTGACTCTGGCTCCATTCAAATGCACGATGCCCT
TTGCGTGATGGCGCTGAACATCATGAACGAGAAGATCTACATTATTCTGT
GGTTCTGGTACGCCTTCCTTTTGATTGTTACTGTTCTGGGACTGCTTTGG
AGAATTTTAACCCTGTGCTTCTACAGAAATGTCACATTTACCCGCTGGTC
TCTCTATTGGGCCAAGCCTGGCCAACTGGACGAAAACGAATTATTGGCGG
TAATTGATAAGTGTAACTTTTCCAACTGGATGTTCCTTTTCTTCCTGCGC
TCCAACCTTTCGGAGTTCCTATTCAAGAAGGTTATCTATCATTTGGCTAG
TGAGTTCCCCAATCCCGATCACGATAACGATGTCAATGCCTATCGAGAGG
CACCGCCCACGCCCGCTAAGAACCGTTATCCGGAGCTCAGTGGTCTGGAT
ACGATTGATTCACCACTCTTGCACCTTCGACGCAATGGCTCGCCCTCTGC
CGGCGGAGCCCAAGGGCCATCGACTTCGGATATGGCAAAGTTACCTGTAG
CAAGCTTTCTAGACCAT
BO08170.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:59:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx7-RB | 1086 | CG2977-PB | 1..1083 | 17..1099 | 5415 | 100 | Plus |
Inx7-RA | 1317 | CG2977-PA | 233..1314 | 18..1099 | 5410 | 100 | Plus |
Inx3-RC | 1188 | CG1448-PC | 724..841 | 542..659 | 185 | 77.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:59:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx7-RB | 1690 | CG2977-RB | 487..1569 | 17..1099 | 5415 | 100 | Plus |
Inx7-RA | 1634 | CG2977-RA | 432..1513 | 18..1099 | 5410 | 100 | Plus |
Inx3-RC | 1652 | CG1448-RC | 864..981 | 542..659 | 185 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:59:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6992173..6992883 | 729..19 | 3555 | 100 | Minus |
X | 23542271 | X | 6991733..6992102 | 1099..730 | 1850 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:59:22 has no hits.
BO08170.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:34 Download gff for
BO08170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx7-RB | 1..1086 | 17..1103 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:35 Download gff for
BO08170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx7-RB | 481..1575 | 9..1108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:33 Download gff for
BO08170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx7-RB | 487..1569 | 17..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:34 Download gff for
BO08170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx7-RB | 481..1575 | 9..1108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:01 Download gff for
BO08170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx7-RB | 487..1569 | 17..1101 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:01 Download gff for
BO08170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6991731..6992102 | 730..1101 | 99 | <- | Minus |
X | 6992173..6992884 | 17..729 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:33 Download gff for
BO08170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6885764..6886135 | 730..1101 | 99 | <- | Minus |
arm_X | 6886206..6886917 | 17..729 | 99 | | Minus |
BO08170.pep Sequence
Translation from 16 to 1117
> BO08170.pep
MVRDQNQTAYRPGSEPPGIGAFDPEKDTIKRHAYYQWVPFVLFFQALCFY
IPHALWKSWEGGRIKALVFGLRMVGLTRYLKNDSLRIGKLNIPSMAEAEE
RVKDIRRTMIDRMRLNQSWGAHLVFAEVLNLINLLLQITWTNRFLGGQFL
TLGPHALKNRWSDELSVLDLVFPKITKCKFHKFGDSGSIQMHDALCVMAL
NIMNEKIYIILWFWYAFLLIVTVLGLLWRILTLCFYRNVTFTRWSLYWAK
PGQLDENELLAVIDKCNFSNWMFLFFLRSNLSEFLFKKVIYHLASEFPNP
DHDNDVNAYREAPPTPAKNRYPELSGLDTIDSPLLHLRRNGSPSAGGAQG
PSTSDMAKLPVASFLDH
BO08170.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx7-PB | 361 | CG2977-PB | 1..361 | 1..361 | 1940 | 100 | Plus |
Inx7-PA | 438 | CG2977-PA | 78..438 | 1..361 | 1936 | 99.7 | Plus |
Inx2-PD | 367 | CG4590-PD | 91..358 | 17..302 | 514 | 37.7 | Plus |
Inx2-PC | 367 | CG4590-PC | 91..358 | 17..302 | 514 | 37.7 | Plus |
Inx2-PB | 367 | CG4590-PB | 91..358 | 17..302 | 514 | 37.7 | Plus |