Clone Sequence Records
BO08171.3prime Sequence
933 bp (871 high quality bases) assembled on 2006-01-06
> BO08171.3prime
ATGGTCTAGAAAGCTTGCCGTTTCATATACCTCAGAGCTTATCCTATCGG
TTTGGGAATAAGTCGAAGAAACTGTACCGGAATATTCTGCAGAATTCGTG
GCGGGCTCTGTGGGGGATTCTGGAGTCAAATTTGGTGTACACGCTACATT
GGAATCTTGAACGGATTCCGTTTCGGAATCACCACCAGAACATGTGGTGG
AGTCCGAGAAAGAACTTGCGTTAGAATTTGCTGGGTGTTCTGCATGAAAA
TTTACTTCAGTACCAGATCCGTTTTTGCAATCCGTAAAGGAATCTATTGA
TGTGGTTGTAGAGGAGGATTCAGAAGAATCCAAATCGGAATCAAAAACGG
AATGGTTTTTAGCAAGCAAATCCAAATCCAACTCGACTGCCGAAGTATAA
AAGGTCTGTTTCACATTAGGAGCGGCATCCAAATCTTCGGTAGAACTTGT
ACCTCCAACAGCACAGTTATATTCTCCAGGCTCCTTCAAATCTTCCGCGG
AATTTTCTGATGTCCATGATTCGTTTACCGTCAGTGCATCACCAATTTCA
TATTCCATATGGTCCTTCATTATCAATCGAGCTACAAAGCTTTTAGGTGA
ATTTTGTATTTGCCGCAGATAGCGAAAAAATACATCTGGGGAGAGATCGG
AGTCACCGTTTGCATTGAAAAGTGATAAATATGGACACTGTGGATCCTGA
GCCCAGCGCCGATTGCCGCGTATTATAGATTCTGACTGAAAGGTTTCCGT
ATAATATTCGAATTGGCTCAGCATCGCATTGTGTAGAAAGTGGCATAGGA
CATTCGCAAGTTCTGGTCGGAGATCTTTAAGATTGCTCGTCCATTGAAGA
ATAAATACGGCTGGAATCATAAGAAATCTTACCAAGCTCAAAACACGTGG
AATGTATTTTATGCGCATCTCATAGTTTGATAT
BO08171.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10752-PA | 1620 | CG10752-RA | 703..1617 | 933..19 | 4575 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:07:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10752-RA | 1774 | CG10752-RA | 813..1727 | 933..19 | 4575 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:07:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12952733..12953647 | 19..933 | 4575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:07:19 has no hits.
BO08171.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:06 Download gff for
BO08171.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10752-PA | 703..1620 | 15..933 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:21 Download gff for
BO08171.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10752-PA | 703..1620 | 15..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:42 Download gff for
BO08171.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10752-RA | 813..1734 | 10..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:16 Download gff for
BO08171.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10752-RA | 813..1734 | 10..933 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:16 Download gff for
BO08171.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12952725..12953647 | 10..933 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:42 Download gff for
BO08171.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12945825..12946747 | 10..933 | 99 | | Plus |
BO08171.5prime Sequence
886 bp (882 high quality bases) assembled on 2006-01-06
> BO08171.5prime
GAAGTTATCAGTCGACATGGATGTATCCCAGTCAGATGGCCCAACAGAAA
ATGAGGCTGGCGGAATGAAGAACATTACACATCAGTTCGAGTTCATGTCT
AATAGGTTGAAGGAGCATATGAAATACAACATCCTCCGTAACGCTGTGTT
TTACAAGAAGATTCCCCTGCAGAAGAAACTAAAACTTGCCCTTGAAAGAA
ATATCGGTCCCCATGCCTATATAATAGTTAACGATACAATCTACAAGTGC
CAAGTGTTCGTACTCCGCATCTACTGCAAGCTGTTTACCAACAACCTCAA
GCGGGGTGACATAGTCAAGTTTCCCAGGGACGCGATGAGCAATGAGTGCT
TTGAATTGGCCTATACCTGGATGACTAATAATGCGATACATTTGCCACGT
GACAAGATAATAAATTTGCTCGCGGCCGCAAAATGTTTGCAGTGCATTCC
CTTGATCAAGCGCATCTTTGAGTTTCTTAACGACTACCGAACCCATTGCG
AACTTTTTTCATTTAGCTGCTATTTGAAGGCCAAAGATATGGGTATGACC
CAGGTAGCCGACATGATGGTGTCCAGAGTGACCAAGTCCTTCCTGGTACT
AGTGTCCAATGGACAGTTCATTAAGATGGATATCGACGGCGCGTGCACTC
TGCTGAGATCGAGACACTTGGCTGTACAAAACGAGATCGAGATTTTTTAT
TCAGCTCTGCTCTGGCTAATATCAAACTATGAGATGCGCATAAAATACAT
TCCACGTGTTTTGAGCTTGGTAAGATTTCTTATGATTCCAGCCGTATTTA
TTCTTCAATGGACGAGCAATCTTAAAGATCTCCGACCAGAACTTGCGAAT
GTCCTATGCCACTTTCTACACAATGCGATGCTGAGC
BO08171.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10752-PA | 1620 | CG10752-RA | 1..870 | 17..886 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10752-RA | 1774 | CG10752-RA | 111..980 | 17..886 | 4350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12953863..12954537 | 691..17 | 3375 | 100 | Minus |
| 3L | 28110227 | 3L | 12953480..12953676 | 886..690 | 985 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:00:39 has no hits.
BO08171.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:07 Download gff for
BO08171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10752-PA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:22 Download gff for
BO08171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10752-PA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:46:04 Download gff for
BO08171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10752-RA | 107..980 | 9..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:32:43 Download gff for
BO08171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10752-RA | 107..980 | 9..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:32:43 Download gff for
BO08171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12953480..12953674 | 692..886 | 100 | <- | Minus |
| 3L | 12953863..12954541 | 9..691 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:46:04 Download gff for
BO08171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12946580..12946774 | 692..886 | 100 | <- | Minus |
| arm_3L | 12946963..12947641 | 9..691 | 99 | | Minus |
BO08171.complete Sequence
1651 bp (1651 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631086
> BO08171.complete
GAAGTTATCAGTCGACATGGATGTATCCCAGTCAGATGGCCCAACAGAAA
ATGAGGCTGGCGGAATGAAGAACATTACACATCAGTTCGAGTTCATGTCT
AATAGGTTGAAGGAGCATATGAAATACAACATCCTCCGTAACGCTGTGTT
TTACAAGAAGATTCCCCTGCAGAAGAAACTAAAACTTGCCCTTGAAAGAA
ATATCGGTCCCCATGCCTATATAATAGTTAACGATACAATCTACAAGTGC
CAAGTGTTCGTACTCCGCATCTACTGCAAGCTGTTTACCAACAACCTCAA
GCGGGGTGACATAGTCAAGTTTCCCAGGGACGCGATGAGCAATGAGTGCT
TTGAATTGGCCTATACCTGGATGACTAATAATGCGATACATTTGCCACGT
GACAAGATAATAAATTTGCTCGCGGCCGCAAAATGTTTGCAGTGCATTCC
CTTGATCAAGCGCATCTTTGAGTTTCTTAACGACTACCGAACCCATTGCG
AACTTTTTTCATTTAGCTGCTATTTGAAGGCCAAAGATATGGGTATGACC
CAGGTAGCCGACATGATGGTGTCCAGAGTGACCAAGTCCTTCCTGGTACT
AGTGTCCAATGGACAGTTCATTAAGATGGATATCGACGGCGCGTGCACTC
TGCTGAGATCGAGACACTTGGCTGTACAAAACGAGATCGAGATTTTTTAT
TCAGCTCTGCTCTGGCTAATATCAAACTATGAGATGCGCATAAAATACAT
TCCACGTGTTTTGAGCTTGGTAAGATTTCTTATGATTCCAGCCGTATTTA
TTCTTCAATGGACGAGCAATCTTAAAGATCTCCGACCAGAACTTGCGAAT
GTCCTATGCCACTTTCTACACAATGCGATGCTGAGCCAATTCGAATATTA
TACGGAAACCTTTCAGTCAGAATCTATAATACGCGGCAATCGGCGCTGGG
CTCAGGATCCACAGTGTCCATATTTATCACTTTTCAATGCAAACGGTGAC
TCCGATCTCTCCCCAGATGTATTTTTTCGCTATCTGCGGCAAATACAAAA
TTCACCTAAAAGCTTTGTAGCTCGATTGATAATGAAGGACCATATGGAAT
ATGAAATTGGTGATGCACTGACGGTAAACGAATCATGGACATCAGAAAAT
TCCGCGGAAGATTTGAAGGAGCCTGGAGAATATAACTGTGCTGTTGGAGG
TACAAGTTCTACCGAAGATTTGGATGCCGCTCCTAATGTGAAACAGACCT
TTTATACTTCGGCAGTCGAGTTGGATTTGGATTTGCTTGCTAAAAACCAT
TCCGTTTTTGATTCCGATTTGGATTCTTCTGAATCCTCCTCTACAACCAC
ATCAATAGATTCCTTTACGGATTGCAAAAACGGATCTGGTACTGAAGTAA
ATTTTCATGCAGAACACCCAGCAAATTCTAACGCAAGTTCTTTCTCGGAC
TCCACCACATGTTCTGGTGGTGATTCCGAAACGGAATCCGTTCAAGATTC
CAATGTAGCGTGTACACCAAATTTGACTCCAGAATCCCCCACAGAGCCCG
CCACGAATTCTGCAGAATATTCCGGTACAGTTTCTTCGACTTATTCCCAA
ACCGATAGGATAAGCTCTGAGGTATATGAAACGGCAAGCTTTCTAGACCA
T
BO08171.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10752-RA | 1620 | CG10752-PA | 1..1617 | 17..1633 | 8085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10752-RA | 1774 | CG10752-RA | 111..1727 | 17..1633 | 8085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12952733..12953676 | 1633..690 | 4720 | 100 | Minus |
| 3L | 28110227 | 3L | 12953863..12954537 | 691..17 | 3375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:29:18 has no hits.
BO08171.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:35 Download gff for
BO08171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10752-RA | 1..1620 | 17..1637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:37 Download gff for
BO08171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10752-RA | 22..1649 | 9..1642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:14 Download gff for
BO08171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10752-RA | 111..1727 | 17..1635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:36 Download gff for
BO08171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10752-RA | 22..1649 | 9..1642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:21 Download gff for
BO08171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10752-RA | 111..1727 | 17..1635 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:21 Download gff for
BO08171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12952731..12953674 | 692..1635 | 99 | <- | Minus |
| 3L | 12953863..12954537 | 17..691 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:14 Download gff for
BO08171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12945831..12946774 | 692..1635 | 99 | <- | Minus |
| arm_3L | 12946963..12947637 | 17..691 | 100 | | Minus |
BO08171.pep Sequence
Translation from 16 to 1651
> BO08171.pep
MDVSQSDGPTENEAGGMKNITHQFEFMSNRLKEHMKYNILRNAVFYKKIP
LQKKLKLALERNIGPHAYIIVNDTIYKCQVFVLRIYCKLFTNNLKRGDIV
KFPRDAMSNECFELAYTWMTNNAIHLPRDKIINLLAAAKCLQCIPLIKRI
FEFLNDYRTHCELFSFSCYLKAKDMGMTQVADMMVSRVTKSFLVLVSNGQ
FIKMDIDGACTLLRSRHLAVQNEIEIFYSALLWLISNYEMRIKYIPRVLS
LVRFLMIPAVFILQWTSNLKDLRPELANVLCHFLHNAMLSQFEYYTETFQ
SESIIRGNRRWAQDPQCPYLSLFNANGDSDLSPDVFFRYLRQIQNSPKSF
VARLIMKDHMEYEIGDALTVNESWTSENSAEDLKEPGEYNCAVGGTSSTE
DLDAAPNVKQTFYTSAVELDLDLLAKNHSVFDSDLDSSESSSTTTSIDSF
TDCKNGSGTEVNFHAEHPANSNASSFSDSTTCSGGDSETESVQDSNVACT
PNLTPESPTEPATNSAEYSGTVSSTYSQTDRISSEVYETASFLDH
BO08171.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10752-PA | 539 | CG10752-PA | 1..539 | 1..539 | 2816 | 100 | Plus |
| CG12857-PA | 440 | CG12857-PA | 104..419 | 55..358 | 244 | 22.6 | Plus |
| CG30357-PA | 451 | CG30357-PA | 110..423 | 48..350 | 217 | 21.3 | Plus |
| CG9970-PA | 484 | CG9970-PA | 141..344 | 59..262 | 196 | 29 | Plus |
| CG12857-PB | 293 | CG12857-PB | 104..277 | 55..227 | 168 | 25.3 | Plus |
