Clone Sequence Records
BO08172.3prime Sequence
927 bp (844 high quality bases) assembled on 2006-01-06
> BO08172.3prime
ATGGTCTAGAAAGCTTGCACCGAATTTGGTGAAGTGTCGCAGGATGTGCG
ACATGGCCGCGGGATTATCGGCAGGAACCATGTGACCAGCCCGGTTGACC
CAAAACATGCTGAAGTTGCCATAGGTCTTCTCGTAACCCTCGAGAACTCG
ATCTACGGTGATTCCCACGCGCGGAGAGACCTGGTAAGATGGCTTGGCGG
ACCATTCCATTGCTTCGATCCAGTTGACGGCTCCCGGAGTGGCGCAAATC
AGGTCCAGTCCTCCGGAGAACACGCCCACTTTTACGGTGGTGTTGTTCAG
CAGTTCACCCACAACATCCACAGCTGGCTTCATGAAATCGCCCATCAGCT
TGGTGAAGGTGGTGCCGCTCTGGGCGCCCCATTTCACTCCGGTGTTGATT
CCGAGGGCCTCGGTCACGGGTCCAAGCATTAGATCCTCCAGCAATTTGTC
GCGGTCCTCATCCACATCGAATTTCACGAGGGTGCGATACATGACCTCCT
CCGGAGTCATGGCAGCTCTGGACATCAACCTGTACTGATCACCCAATGTT
GGGGTCTCCACGTTATAGAAGTCCACTCCCTTGGACTCGCGCAGCACCAC
TGACTGGGTGGAGCTCCACTGCAAAGTGGCCTGTGTCCACTTCTCGCGGT
CAACATAGTCCTTAGTCTTCAGGGCCGAAGCTTCAATCTTGTCATGGCCA
TCCTGATCCACGATTCCCAACTGCAGCAGGAAGGGAGCCCACGAGAGCAC
AGAGTCTATGGGTGAGGTCCAGGGATCTCCCAAGGCCACCGAAACAAAGT
TGCTCTCGATCTCACCGCGCTTGATGGCGTAATCCAACTCCAAAGCGAAC
TCCGGGGGCATCTTTCCCGCATAACTCTCGCAGAAGATGTGCAGCGGCAC
AGTCTTGGATTCCGGGTGGTTTGTGTA
BO08172.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3344-PA | 1341 | CG3344-RA | 430..1338 | 927..19 | 4445 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:01:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3344-RA | 1480 | CG3344-RA | 520..1428 | 927..19 | 4485 | 99.6 | Minus |
CG32483-RA | 1382 | CG32483-RA | 442..604 | 900..738 | 335 | 80.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:01:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 686581..687010 | 498..927 | 2090 | 99.1 | Plus |
3L | 28110227 | 3L | 685994..686287 | 19..312 | 1470 | 100 | Plus |
3L | 28110227 | 3L | 686342..686528 | 312..498 | 935 | 100 | Plus |
3L | 28110227 | 3L | 689408..689570 | 738..900 | 335 | 80.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:01:11 has no hits.
BO08172.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:08 Download gff for
BO08172.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-PA | 431..1341 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:23 Download gff for
BO08172.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-PA | 431..1341 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:46:07 Download gff for
BO08172.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-RA | 521..1431 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:35:36 Download gff for
BO08172.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-RA | 521..1431 | 15..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:35:36 Download gff for
BO08172.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 685990..686286 | 15..311 | 99 | <- | Plus |
3L | 686342..686527 | 312..497 | 100 | <- | Plus |
3L | 686581..687009 | 498..926 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:46:07 Download gff for
BO08172.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 685990..686286 | 15..311 | 99 | <- | Plus |
arm_3L | 686342..686527 | 312..497 | 100 | <- | Plus |
arm_3L | 686581..687009 | 498..926 | 99 | | Plus |
BO08172.5prime Sequence
813 bp (812 high quality bases) assembled on 2006-01-06
> BO08172.5prime
GAAGTTATCAGTCGACATGGCTGGACGCGCTATCATCGCACTTTTGGCCC
TACTGGGATTTGCCGGCTTGGCTTCCGTTGACGCACGCAAGGGCTATGGA
CCCGGTGATCAGGATTGGGGATTTGTGGATGTCAGGACTGGCGCCCACAT
GTTCTACTGGCTGTACTACACCACCGCCAATGTCTCCAGTTACACGGAGC
GTCCGCTGGCCATTTGGCTCCAAGGAGGTCCAGGTGCCTCCTCAACGGGA
TACGGAAACTTTGAGGAGTTGGGTCCCCTGAAGCTCGACGGCAGCTACCG
CGACTGGACTTGGGTGAAGGACATGAACGTGATGTTCATCGACAATCCCG
TGGGCAGTGGTTTCAGCTACGTGGACGGATCTTCTTACTACACGACCAAC
AACAAGCAGATCGCCCTGGATCTCGTTGAGCTGATGAAGGGCTTCTACAC
AAACCACCCGGAATTCAAGACTGTGCCGCTGCACATCTTCTGCGAGAGTT
ATGGCGGAAAGATGGCCCCGGAGTTCGCTTTGGAGTTGGATTACGCCATC
AAGCGCGGTGAGATCGAGAGCAACTTTGTTTCGGTGGCCTTGGGAGATCC
CTGGACCTCACCCATAGACTCTGTGCTCTCGTGGGCTCCCTTCCTGCTGC
AGTTGGGAATCGTGGATCAGGATGGCCATGACAAGATTGAAGCTTCGGCC
CTGAAGACTAAGGACTATGTTGACCGCGAGAAGTGGACACAGGCCACTTT
GCAGTGGAGCTCCACCCAGTCAGTGGTGCTGCGCGAGTCCAAGGGAGTGG
ACTTCTATAACGT
BO08172.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3344-PA | 1341 | CG3344-RA | 1..797 | 17..813 | 3985 | 100 | Plus |
CG32483-PA | 1320 | CG32483-RA | 112..152 | 143..183 | 205 | 100 | Plus |
CG32483-PA | 1320 | CG32483-RA | 178..233 | 209..264 | 155 | 91 | Plus |
CG32483-PA | 1320 | CG32483-RA | 442..494 | 473..525 | 140 | 90.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:39:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3344-RA | 1480 | CG3344-RA | 89..887 | 15..813 | 3995 | 100 | Plus |
CG32483-RA | 1382 | CG32483-RA | 70..604 | 101..635 | 890 | 78.2 | Plus |
CG31821-RB | 1423 | CG31821-RB | 94..251 | 86..243 | 235 | 77.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 686643..687373 | 813..83 | 3655 | 100 | Minus |
3L | 28110227 | 3L | 689408..689942 | 635..101 | 890 | 77.8 | Minus |
3L | 28110227 | 3L | 687802..687870 | 83..15 | 345 | 100 | Minus |
2L | 23513712 | 2L | 15902160..15902317 | 243..86 | 235 | 76.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:39:34 has no hits.
BO08172.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:09 Download gff for
BO08172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-PA | 1..797 | 17..813 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:25 Download gff for
BO08172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-PA | 1..797 | 17..813 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:39:06 Download gff for
BO08172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-RA | 89..887 | 15..813 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:21 Download gff for
BO08172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-RA | 89..887 | 15..813 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:21 Download gff for
BO08172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 687802..687870 | 15..83 | 100 | | Minus |
3L | 686643..687372 | 84..813 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:39:06 Download gff for
BO08172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 686643..687372 | 84..813 | 100 | <- | Minus |
arm_3L | 687802..687870 | 15..83 | 100 | | Minus |
BO08172.complete Sequence
1372 bp (1372 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631087
> BO08172.complete
GAAGTTATCAGTCGACATGGCTGGACGCGCTATCATCGCACTTTTGGCCC
TACTGGGATTTGCCGGCTTGGCTTCCGTTGACGCACGCAAGGGCTATGGA
CCCGGTGATCAGGATTGGGGATTTGTGGATGTCAGGACTGGCGCCCACAT
GTTCTACTGGCTGTACTACACCACCGCCAATGTCTCCAGTTACACGGAGC
GTCCGCTGGCCATTTGGCTCCAAGGAGGTCCAGGTGCCTCCTCAACGGGA
TACGGAAACTTTGAGGAGTTGGGTCCCCTGAAGCTCGACGGCAGCTACCG
CGACTGGACTTGGGTGAAGGACATGAACGTGATGTTCATCGACAATCCCG
TGGGCAGTGGTTTCAGCTACGTGGACGGATCTTCTTACTACACGACCAAC
AACAAGCAGATCGCCCTGGATCTCGTTGAGCTGATGAAGGGCTTCTACAC
AAACCACCCGGAATTCAAGACTGTGCCGCTGCACATCTTCTGCGAGAGTT
ATGGCGGAAAGATGGCCCCGGAGTTCGCTTTGGAGTTGGATTACGCCATC
AAGCGCGGTGAGATCGAGAGCAACTTTGTTTCGGTGGCCTTGGGAGATCC
CTGGACCTCACCCATAGACTCTGTGCTCTCGTGGGCTCCCTTCCTGCTGC
AGTTGGGAATCGTGGATCAGGATGGCCATGACAAGATTGAAGCTTCGGCC
CTGAAGACTAAGGACTATGTTGACCGCGAGAAGTGGACACAGGCCACTTT
GCAGTGGAGCTCCACCCAGTCAGTGGTGCTGCGCGAGTCCAAGGGAGTGG
ACTTCTATAACGTGGAGACCCCAACATTGGGTGATCAGTACAGGTTGATG
TCCAGAGCTGCCATGACTCCGGAGGAGGTCATGTATCGCACCCTCGTGAA
ATTCGATGTGGATGAGGACCGCGACAAATTGCTGGAGGATCTAATGCTTG
GACCCGTGACCGAGGCCCTCGGAATCAACACCGGAGTGAAATGGGGCGCC
CAGAGCGGCACCACCTTCACCAAGCTGATGGGCGATTTCATGAAGCCAGC
TGTGGATGTTGTGGGTGAACTGCTGAACAACACCACCGTAAAAGTGGGCG
TGTTCTCCGGAGGACTGGACCTGATTTGCGCCACTCCGGGAGCCGTCAAC
TGGATCGAAGCAATGGAATGGTCCGCCAAGCCATCTTACCAGGTCTCTCC
GCGCGTGGGAATCACCGTAGATCGAGTTCTCGAGGGTTACGAGAAGACCT
ATGGCAACTTCAGCATGTTTTGGGTCAACCGGGCTGGTCACATGGTTCCT
GCCGATAATCCCGCGGCCATGTCGCACATCCTGCGACACTTCACCAAATT
CGGTGCAAGCTTTCTAGACCAT
BO08172.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:59:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3344-RA | 1341 | CG3344-PA | 1..1338 | 17..1354 | 6690 | 100 | Plus |
CG32483-RA | 1320 | CG32483-PA | 70..604 | 101..635 | 890 | 77.8 | Plus |
CG31821-RB | 1284 | CG31821-PB | 61..218 | 86..243 | 235 | 76.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3344-RA | 1480 | CG3344-RA | 89..1428 | 15..1354 | 6700 | 100 | Plus |
CG32483-RA | 1382 | CG32483-RA | 70..604 | 101..635 | 890 | 77.8 | Plus |
CG31821-RB | 1423 | CG31821-RB | 94..251 | 86..243 | 235 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 686581..687373 | 875..83 | 3965 | 100 | Minus |
3L | 28110227 | 3L | 685994..686287 | 1354..1061 | 1470 | 100 | Minus |
3L | 28110227 | 3L | 686342..686528 | 1061..875 | 935 | 100 | Minus |
3L | 28110227 | 3L | 689408..689942 | 635..101 | 890 | 77.8 | Minus |
3L | 28110227 | 3L | 687802..687870 | 83..15 | 345 | 100 | Minus |
2L | 23513712 | 2L | 15902160..15902317 | 243..86 | 235 | 76.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:59:34 has no hits.
BO08172.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:37 Download gff for
BO08172.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-RA | 1..1341 | 17..1358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:39 Download gff for
BO08172.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-RA | 79..1421 | 15..1358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:41:15 Download gff for
BO08172.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-RA | 91..1428 | 17..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:37 Download gff for
BO08172.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-RA | 79..1421 | 15..1358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:45 Download gff for
BO08172.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3344-RA | 91..1428 | 17..1356 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:45 Download gff for
BO08172.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 685992..686286 | 1062..1356 | 99 | <- | Minus |
3L | 686342..686527 | 876..1061 | 100 | <- | Minus |
3L | 686581..687372 | 84..875 | 100 | <- | Minus |
3L | 687802..687868 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:41:15 Download gff for
BO08172.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 685992..686286 | 1062..1356 | 99 | <- | Minus |
arm_3L | 686342..686527 | 876..1061 | 100 | <- | Minus |
arm_3L | 686581..687372 | 84..875 | 100 | <- | Minus |
arm_3L | 687802..687868 | 17..83 | 100 | | Minus |
BO08172.pep Sequence
Translation from 16 to 1372
> BO08172.pep
MAGRAIIALLALLGFAGLASVDARKGYGPGDQDWGFVDVRTGAHMFYWLY
YTTANVSSYTERPLAIWLQGGPGASSTGYGNFEELGPLKLDGSYRDWTWV
KDMNVMFIDNPVGSGFSYVDGSSYYTTNNKQIALDLVELMKGFYTNHPEF
KTVPLHIFCESYGGKMAPEFALELDYAIKRGEIESNFVSVALGDPWTSPI
DSVLSWAPFLLQLGIVDQDGHDKIEASALKTKDYVDREKWTQATLQWSST
QSVVLRESKGVDFYNVETPTLGDQYRLMSRAAMTPEEVMYRTLVKFDVDE
DRDKLLEDLMLGPVTEALGINTGVKWGAQSGTTFTKLMGDFMKPAVDVVG
ELLNNTTVKVGVFSGGLDLICATPGAVNWIEAMEWSAKPSYQVSPRVGIT
VDRVLEGYEKTYGNFSMFWVNRAGHMVPADNPAAMSHILRHFTKFGASFL
DH
BO08172.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3344-PA | 446 | CG3344-PA | 1..446 | 1..446 | 2372 | 100 | Plus |
CG32483-PA | 439 | CG32483-PA | 5..439 | 6..446 | 1663 | 70.3 | Plus |
CG31823-PA | 427 | CG31823-PA | 14..427 | 11..446 | 1112 | 49.8 | Plus |
CG31821-PB | 427 | CG31821-PB | 7..421 | 5..445 | 909 | 42.8 | Plus |
CG31821-PA | 427 | CG31821-PA | 7..421 | 5..445 | 909 | 42.8 | Plus |