Clone BO08172 Report

Search the DGRC for BO08172

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:81
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG3344-RA
Protein status:BO08172.pep: validated full length
Sequenced Size:1372

Clone Sequence Records

BO08172.3prime Sequence

927 bp (844 high quality bases) assembled on 2006-01-06

> BO08172.3prime
ATGGTCTAGAAAGCTTGCACCGAATTTGGTGAAGTGTCGCAGGATGTGCG
ACATGGCCGCGGGATTATCGGCAGGAACCATGTGACCAGCCCGGTTGACC
CAAAACATGCTGAAGTTGCCATAGGTCTTCTCGTAACCCTCGAGAACTCG
ATCTACGGTGATTCCCACGCGCGGAGAGACCTGGTAAGATGGCTTGGCGG
ACCATTCCATTGCTTCGATCCAGTTGACGGCTCCCGGAGTGGCGCAAATC
AGGTCCAGTCCTCCGGAGAACACGCCCACTTTTACGGTGGTGTTGTTCAG
CAGTTCACCCACAACATCCACAGCTGGCTTCATGAAATCGCCCATCAGCT
TGGTGAAGGTGGTGCCGCTCTGGGCGCCCCATTTCACTCCGGTGTTGATT
CCGAGGGCCTCGGTCACGGGTCCAAGCATTAGATCCTCCAGCAATTTGTC
GCGGTCCTCATCCACATCGAATTTCACGAGGGTGCGATACATGACCTCCT
CCGGAGTCATGGCAGCTCTGGACATCAACCTGTACTGATCACCCAATGTT
GGGGTCTCCACGTTATAGAAGTCCACTCCCTTGGACTCGCGCAGCACCAC
TGACTGGGTGGAGCTCCACTGCAAAGTGGCCTGTGTCCACTTCTCGCGGT
CAACATAGTCCTTAGTCTTCAGGGCCGAAGCTTCAATCTTGTCATGGCCA
TCCTGATCCACGATTCCCAACTGCAGCAGGAAGGGAGCCCACGAGAGCAC
AGAGTCTATGGGTGAGGTCCAGGGATCTCCCAAGGCCACCGAAACAAAGT
TGCTCTCGATCTCACCGCGCTTGATGGCGTAATCCAACTCCAAAGCGAAC
TCCGGGGGCATCTTTCCCGCATAACTCTCGCAGAAGATGTGCAGCGGCAC
AGTCTTGGATTCCGGGTGGTTTGTGTA

BO08172.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3344-PA 1341 CG3344-RA 430..1338 927..19 4445 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3344-RA 1480 CG3344-RA 520..1428 927..19 4485 99.6 Minus
CG32483-RA 1382 CG32483-RA 442..604 900..738 335 80.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 686581..687010 498..927 2090 99.1 Plus
3L 28110227 3L 685994..686287 19..312 1470 100 Plus
3L 28110227 3L 686342..686528 312..498 935 100 Plus
3L 28110227 3L 689408..689570 738..900 335 80.4 Plus
Blast to na_te.dros performed on 2015-02-11 18:01:11 has no hits.

BO08172.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:08 Download gff for BO08172.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3344-PA 431..1341 15..926 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:23 Download gff for BO08172.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3344-PA 431..1341 15..926 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:46:07 Download gff for BO08172.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 521..1431 15..926 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:35:36 Download gff for BO08172.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 521..1431 15..926 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:35:36 Download gff for BO08172.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 685990..686286 15..311 99 <- Plus
3L 686342..686527 312..497 100 <- Plus
3L 686581..687009 498..926 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:46:07 Download gff for BO08172.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 685990..686286 15..311 99 <- Plus
arm_3L 686342..686527 312..497 100 <- Plus
arm_3L 686581..687009 498..926 99   Plus

BO08172.5prime Sequence

813 bp (812 high quality bases) assembled on 2006-01-06

> BO08172.5prime
GAAGTTATCAGTCGACATGGCTGGACGCGCTATCATCGCACTTTTGGCCC
TACTGGGATTTGCCGGCTTGGCTTCCGTTGACGCACGCAAGGGCTATGGA
CCCGGTGATCAGGATTGGGGATTTGTGGATGTCAGGACTGGCGCCCACAT
GTTCTACTGGCTGTACTACACCACCGCCAATGTCTCCAGTTACACGGAGC
GTCCGCTGGCCATTTGGCTCCAAGGAGGTCCAGGTGCCTCCTCAACGGGA
TACGGAAACTTTGAGGAGTTGGGTCCCCTGAAGCTCGACGGCAGCTACCG
CGACTGGACTTGGGTGAAGGACATGAACGTGATGTTCATCGACAATCCCG
TGGGCAGTGGTTTCAGCTACGTGGACGGATCTTCTTACTACACGACCAAC
AACAAGCAGATCGCCCTGGATCTCGTTGAGCTGATGAAGGGCTTCTACAC
AAACCACCCGGAATTCAAGACTGTGCCGCTGCACATCTTCTGCGAGAGTT
ATGGCGGAAAGATGGCCCCGGAGTTCGCTTTGGAGTTGGATTACGCCATC
AAGCGCGGTGAGATCGAGAGCAACTTTGTTTCGGTGGCCTTGGGAGATCC
CTGGACCTCACCCATAGACTCTGTGCTCTCGTGGGCTCCCTTCCTGCTGC
AGTTGGGAATCGTGGATCAGGATGGCCATGACAAGATTGAAGCTTCGGCC
CTGAAGACTAAGGACTATGTTGACCGCGAGAAGTGGACACAGGCCACTTT
GCAGTGGAGCTCCACCCAGTCAGTGGTGCTGCGCGAGTCCAAGGGAGTGG
ACTTCTATAACGT

BO08172.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3344-PA 1341 CG3344-RA 1..797 17..813 3985 100 Plus
CG32483-PA 1320 CG32483-RA 112..152 143..183 205 100 Plus
CG32483-PA 1320 CG32483-RA 178..233 209..264 155 91 Plus
CG32483-PA 1320 CG32483-RA 442..494 473..525 140 90.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3344-RA 1480 CG3344-RA 89..887 15..813 3995 100 Plus
CG32483-RA 1382 CG32483-RA 70..604 101..635 890 78.2 Plus
CG31821-RB 1423 CG31821-RB 94..251 86..243 235 77.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 686643..687373 813..83 3655 100 Minus
3L 28110227 3L 689408..689942 635..101 890 77.8 Minus
3L 28110227 3L 687802..687870 83..15 345 100 Minus
2L 23513712 2L 15902160..15902317 243..86 235 76.6 Minus
Blast to na_te.dros performed on 2015-02-12 04:39:34 has no hits.

BO08172.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:09 Download gff for BO08172.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3344-PA 1..797 17..813 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:25 Download gff for BO08172.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3344-PA 1..797 17..813 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:39:06 Download gff for BO08172.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 89..887 15..813 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:21 Download gff for BO08172.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 89..887 15..813 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:21 Download gff for BO08172.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 687802..687870 15..83 100   Minus
3L 686643..687372 84..813 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:39:06 Download gff for BO08172.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 686643..687372 84..813 100 <- Minus
arm_3L 687802..687870 15..83 100   Minus

BO08172.complete Sequence

1372 bp (1372 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631087

> BO08172.complete
GAAGTTATCAGTCGACATGGCTGGACGCGCTATCATCGCACTTTTGGCCC
TACTGGGATTTGCCGGCTTGGCTTCCGTTGACGCACGCAAGGGCTATGGA
CCCGGTGATCAGGATTGGGGATTTGTGGATGTCAGGACTGGCGCCCACAT
GTTCTACTGGCTGTACTACACCACCGCCAATGTCTCCAGTTACACGGAGC
GTCCGCTGGCCATTTGGCTCCAAGGAGGTCCAGGTGCCTCCTCAACGGGA
TACGGAAACTTTGAGGAGTTGGGTCCCCTGAAGCTCGACGGCAGCTACCG
CGACTGGACTTGGGTGAAGGACATGAACGTGATGTTCATCGACAATCCCG
TGGGCAGTGGTTTCAGCTACGTGGACGGATCTTCTTACTACACGACCAAC
AACAAGCAGATCGCCCTGGATCTCGTTGAGCTGATGAAGGGCTTCTACAC
AAACCACCCGGAATTCAAGACTGTGCCGCTGCACATCTTCTGCGAGAGTT
ATGGCGGAAAGATGGCCCCGGAGTTCGCTTTGGAGTTGGATTACGCCATC
AAGCGCGGTGAGATCGAGAGCAACTTTGTTTCGGTGGCCTTGGGAGATCC
CTGGACCTCACCCATAGACTCTGTGCTCTCGTGGGCTCCCTTCCTGCTGC
AGTTGGGAATCGTGGATCAGGATGGCCATGACAAGATTGAAGCTTCGGCC
CTGAAGACTAAGGACTATGTTGACCGCGAGAAGTGGACACAGGCCACTTT
GCAGTGGAGCTCCACCCAGTCAGTGGTGCTGCGCGAGTCCAAGGGAGTGG
ACTTCTATAACGTGGAGACCCCAACATTGGGTGATCAGTACAGGTTGATG
TCCAGAGCTGCCATGACTCCGGAGGAGGTCATGTATCGCACCCTCGTGAA
ATTCGATGTGGATGAGGACCGCGACAAATTGCTGGAGGATCTAATGCTTG
GACCCGTGACCGAGGCCCTCGGAATCAACACCGGAGTGAAATGGGGCGCC
CAGAGCGGCACCACCTTCACCAAGCTGATGGGCGATTTCATGAAGCCAGC
TGTGGATGTTGTGGGTGAACTGCTGAACAACACCACCGTAAAAGTGGGCG
TGTTCTCCGGAGGACTGGACCTGATTTGCGCCACTCCGGGAGCCGTCAAC
TGGATCGAAGCAATGGAATGGTCCGCCAAGCCATCTTACCAGGTCTCTCC
GCGCGTGGGAATCACCGTAGATCGAGTTCTCGAGGGTTACGAGAAGACCT
ATGGCAACTTCAGCATGTTTTGGGTCAACCGGGCTGGTCACATGGTTCCT
GCCGATAATCCCGCGGCCATGTCGCACATCCTGCGACACTTCACCAAATT
CGGTGCAAGCTTTCTAGACCAT

BO08172.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3344-RA 1341 CG3344-PA 1..1338 17..1354 6690 100 Plus
CG32483-RA 1320 CG32483-PA 70..604 101..635 890 77.8 Plus
CG31821-RB 1284 CG31821-PB 61..218 86..243 235 76.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3344-RA 1480 CG3344-RA 89..1428 15..1354 6700 100 Plus
CG32483-RA 1382 CG32483-RA 70..604 101..635 890 77.8 Plus
CG31821-RB 1423 CG31821-RB 94..251 86..243 235 76.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 686581..687373 875..83 3965 100 Minus
3L 28110227 3L 685994..686287 1354..1061 1470 100 Minus
3L 28110227 3L 686342..686528 1061..875 935 100 Minus
3L 28110227 3L 689408..689942 635..101 890 77.8 Minus
3L 28110227 3L 687802..687870 83..15 345 100 Minus
2L 23513712 2L 15902160..15902317 243..86 235 76.6 Minus
Blast to na_te.dros performed on 2014-11-27 00:59:34 has no hits.

BO08172.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:37 Download gff for BO08172.complete
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 1..1341 17..1358 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:39 Download gff for BO08172.complete
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 79..1421 15..1358 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:41:15 Download gff for BO08172.complete
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 91..1428 17..1356 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:37 Download gff for BO08172.complete
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 79..1421 15..1358 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:45 Download gff for BO08172.complete
Subject Subject Range Query Range Percent Splice Strand
CG3344-RA 91..1428 17..1356 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:45 Download gff for BO08172.complete
Subject Subject Range Query Range Percent Splice Strand
3L 685992..686286 1062..1356 99 <- Minus
3L 686342..686527 876..1061 100 <- Minus
3L 686581..687372 84..875 100 <- Minus
3L 687802..687868 17..83 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:41:15 Download gff for BO08172.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 685992..686286 1062..1356 99 <- Minus
arm_3L 686342..686527 876..1061 100 <- Minus
arm_3L 686581..687372 84..875 100 <- Minus
arm_3L 687802..687868 17..83 100   Minus

BO08172.pep Sequence

Translation from 16 to 1372

> BO08172.pep
MAGRAIIALLALLGFAGLASVDARKGYGPGDQDWGFVDVRTGAHMFYWLY
YTTANVSSYTERPLAIWLQGGPGASSTGYGNFEELGPLKLDGSYRDWTWV
KDMNVMFIDNPVGSGFSYVDGSSYYTTNNKQIALDLVELMKGFYTNHPEF
KTVPLHIFCESYGGKMAPEFALELDYAIKRGEIESNFVSVALGDPWTSPI
DSVLSWAPFLLQLGIVDQDGHDKIEASALKTKDYVDREKWTQATLQWSST
QSVVLRESKGVDFYNVETPTLGDQYRLMSRAAMTPEEVMYRTLVKFDVDE
DRDKLLEDLMLGPVTEALGINTGVKWGAQSGTTFTKLMGDFMKPAVDVVG
ELLNNTTVKVGVFSGGLDLICATPGAVNWIEAMEWSAKPSYQVSPRVGIT
VDRVLEGYEKTYGNFSMFWVNRAGHMVPADNPAAMSHILRHFTKFGASFL
DH

BO08172.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3344-PA 446 CG3344-PA 1..446 1..446 2372 100 Plus
CG32483-PA 439 CG32483-PA 5..439 6..446 1663 70.3 Plus
CG31823-PA 427 CG31823-PA 14..427 11..446 1112 49.8 Plus
CG31821-PB 427 CG31821-PB 7..421 5..445 909 42.8 Plus
CG31821-PA 427 CG31821-PA 7..421 5..445 909 42.8 Plus