Clone BO08174 Report

Search the DGRC for BO08174

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:81
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptPde8-RC
Protein status:BO08174.pep: validated not full length
Sequenced Size:1234

Clone Sequence Records

BO08174.3prime Sequence

915 bp (828 high quality bases) assembled on 2006-01-06

> BO08174.3prime
ATGGTCTAGAAAGCTTGCTTTGGAGTTGGCCATCTTGCCCACCGGTGGCT
GCTTGGCCATGATCTCCGCCAGCGTGTTGACGCCCTGCTCGTCGTACTTC
TTCCATTGCGAGTAGTTGATCTGCATGTAGGTGATCAGCTGTGGCATGTC
GATGAAGCTCTCCCAGGCGTGCATCATGTCCTGTATGATGTATTCGATGA
AGCCGATCTGGCTCTTTGGTATGCTGCAGGTGGCCCGATCGAACATCGGC
ATCACGATGGGCAGGTGGCGCTGCTTCTCCTCGTCCGTCTGCATGAAGTA
CTCCTCGGCTATCCGGCGGGCCCACTCGATGCAGAATTGCATCGGCCTGG
CGGGATTGCTCACATCGGCCACTTTGATCAGCATGCGACGCATGAGTATG
GACGTCTCCTCATCCGTTTGGGGATTGTGATCACGCGGCTCCTCGCCGCC
AAAAACGCTCACGAACTTGGCCAGGTGCTCAAAGTGGCGGGTCATCTCGG
TGGCCAGGATCATGTCAATGATGGTGCTGCGTGCCGACTTGTATGTCTCC
TTGTCCAGGTTCTTGAAAATGTTGATCTTGTCGTCGCCCAGTGTCAGCTT
AAAGGTGATTGCCGCGTGATGGTTCTCCAGCACAGTCAGATCATTGTATA
GAACGGCCAGGGCGTCGTTGGAGTTGCACAAGAAGGCGGATGAGCGACCA
GGATGATCCACATCGTGGGCGGCGGCGGCGATCAAGGCAGTCGCCTCCTC
CATGCGATCCATCACCAGCATATCCTTGTTGGTTAGTTGGGTGATGAAAG
CGCCAGTGGCCTGCATCACATCCGCGGCATGGGTGCTGTTGTGATATGTG
TTGCTCTTGCGGTAGTGGGCTTCATCACTGCCAACCACGCCTTGCACACG
TTCTCATCGATGTTC

BO08174.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5411-PC 1203 Pde8-RC 345..1200 874..19 4280 100 Minus
CG5411-PD 2418 Pde8-RD 1560..2415 874..19 4280 100 Minus
CG5411-PE 2718 Pde8-RE 1860..2715 874..19 4280 100 Minus
CG5411-PB 2715 Pde8-RB 1857..2712 874..19 4280 100 Minus
CG5411-PA 2745 Pde8-RA 1887..2742 874..19 4280 100 Minus
CG5411-PC 1203 Pde8-RC 303..344 915..874 210 100 Minus
CG5411-PD 2418 Pde8-RD 1518..1559 915..874 210 100 Minus
CG5411-PE 2718 Pde8-RE 1818..1859 915..874 210 100 Minus
CG5411-PB 2715 Pde8-RB 1815..1856 915..874 210 100 Minus
CG5411-PA 2745 Pde8-RA 1845..1886 915..874 210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
Pde8-RO 4895 CG45019-RO 2667..3564 915..19 4465 99.9 Minus
Pde8-RK 5389 CG45019-RK 2334..3231 915..19 4465 99.9 Minus
Pde8-RI 5562 CG45019-RI 2507..3404 915..19 4465 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23678218..23678489 429..158 1360 100 Minus
2R 25286936 2R 23677713..23677938 812..587 1130 100 Minus
2R 25286936 2R 23678001..23678159 588..430 795 100 Minus
2R 25286936 2R 23678547..23678686 158..19 700 100 Minus
2R 25286936 2R 23677548..23677654 915..810 485 99.1 Minus
Blast to na_te.dros performed on 2015-02-11 03:07:50 has no hits.

BO08174.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:12 Download gff for BO08174.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5411-PB 1815..2715 18..915 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:28 Download gff for BO08174.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5411-PD 1518..2418 18..915 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:44 Download gff for BO08174.3prime
Subject Subject Range Query Range Percent Splice Strand
Pde8-RN 2620..3521 13..915 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:18 Download gff for BO08174.3prime
Subject Subject Range Query Range Percent Splice Strand
Pde8-RI 2507..3408 13..915 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:18 Download gff for BO08174.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23678547..23678690 13..158 97   Minus
2R 23677548..23677653 811..915 99 -> Minus
2R 23677715..23677937 588..810 100 -> Minus
2R 23678002..23678159 430..587 100 -> Minus
2R 23678218..23678488 159..429 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:44 Download gff for BO08174.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19565071..19565176 811..915 99 -> Minus
arm_2R 19565238..19565460 588..810 100 -> Minus
arm_2R 19565525..19565682 430..587 100 -> Minus
arm_2R 19565741..19566011 159..429 100 -> Minus
arm_2R 19566070..19566213 13..158 97   Minus

BO08174.5prime Sequence

910 bp (822 high quality bases) assembled on 2006-01-06

> BO08174.5prime
GAAGTTATCAGTCGACATGAAGGAGATACGAACGGACGATCCCATAGCCA
CCGATCTAATCGGTGCCCTGCTAACGGGTCCCAGCGTGTACTCATCGCGC
CGCAGCTCGAATGACTCCATCATACGCACTGGCAGCTCCACGAGAACTGC
CGCCATTGTGCCCGCCAAAATGAAGTCCAATCCCATCATCATGGAACTAC
TTGACGAATCTCTCAGCTGGGACTTTGATATTTTCAAATTGGAGGAGATC
ACCGACTACCACCCGCTGCTCTACCTGGGCATGGAGATGTTCCGCCGCTT
CGACGTCTTTGCCACCCTGAACATCGATGAGAACGTGTGCAAGGCGTGGT
TGGCAGTGATTGAAGCCCACTACCGCAAGAGCAACACATATCACAACAGC
ACCCATGCCGCGGATGTGATGCAGGCCACTGGCGCTTTCATCACCCAACT
AACCAACAAGGATATGCTGGTGATGGATCGCATGGAGGAGGCGACTGCCT
TGATCGCCGCCGCCGCCCACGATGTGGATCATCCTGGTCGCTCATCCGCC
TTCTTGTGCAACTCCAACGACGCCCTGGCCGTTCTATACAATGATCTGAC
TGTGCTGGAGAACCATCACGCGGCAATCACCTTTAAGCTGACACTGGGCG
ACGACAAGATCAACATTTTCAAGAACCTGGACAAGGAGACATACAAGTCG
GCACGCAGCACCATCATTGACATGATCCTGGCCACCGAGATGACCCGCCA
CTTTGAGCACCTGGCCAAGTTCGTGAGCGTTTTTGGCGGCGAGGAGCCGC
GTGATCACAATCCCCAAACGGATGAGGAGACGTCCATACTCATGCGTCGC
ATGCTGGATCAAGTGGCCGATGTGAGCAATCCCGCCAGGCCGATGCAATT
CTGCATCGAG

BO08174.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5411-PC 1203 Pde8-RC 1..840 17..856 4200 100 Plus
CG5411-PD 2418 Pde8-RD 1216..2055 17..856 4200 100 Plus
CG5411-PE 2718 Pde8-RE 1516..2355 17..856 4200 100 Plus
CG5411-PB 2715 Pde8-RB 1513..2352 17..856 4200 100 Plus
CG5411-PA 2745 Pde8-RA 1543..2382 17..856 4200 100 Plus
CG5411-PC 1203 Pde8-RC 845..894 861..910 250 100 Plus
CG5411-PD 2418 Pde8-RD 2060..2109 861..910 250 100 Plus
CG5411-PE 2718 Pde8-RE 2360..2409 861..910 250 100 Plus
CG5411-PB 2715 Pde8-RB 2357..2406 861..910 250 100 Plus
CG5411-PA 2745 Pde8-RA 2387..2436 861..910 250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
Pde8-RO 4895 CG45019-RO 2365..3258 17..910 4425 99.8 Plus
Pde8-RK 5389 CG45019-RK 2032..2925 17..910 4425 99.8 Plus
Pde8-RI 5562 CG45019-RI 2205..3098 17..910 4425 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23677403..23677654 174..425 1260 100 Plus
2R 25286936 2R 23677713..23677938 423..648 1130 100 Plus
2R 25286936 2R 23678001..23678159 647..805 795 100 Plus
2R 25286936 2R 23677248..23677347 76..175 500 100 Plus
2R 25286936 2R 23678218..23678322 806..910 465 96.2 Plus
2R 25286936 2R 23677129..23677189 17..77 305 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:39:40 has no hits.

BO08174.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:12 Download gff for BO08174.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5411-PB 1501..2406 6..910 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:30 Download gff for BO08174.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5411-PD 1204..2109 6..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:39:09 Download gff for BO08174.5prime
Subject Subject Range Query Range Percent Splice Strand
Pde8-RN 2306..3211 6..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:37 Download gff for BO08174.5prime
Subject Subject Range Query Range Percent Splice Strand
Pde8-RI 2193..3098 6..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:37 Download gff for BO08174.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23677117..23677188 6..76 94 -> Plus
2R 23677249..23677347 77..175 100 -> Plus
2R 23677405..23677653 176..424 100 -> Plus
2R 23677715..23677937 425..647 100 -> Plus
2R 23678002..23678159 648..805 100 -> Plus
2R 23678218..23678322 806..910 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:39:09 Download gff for BO08174.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19564640..19564711 6..76 94 -> Plus
arm_2R 19564772..19564870 77..175 100 -> Plus
arm_2R 19564928..19565176 176..424 100 -> Plus
arm_2R 19565238..19565460 425..647 100 -> Plus
arm_2R 19565525..19565682 648..805 100 -> Plus
arm_2R 19565741..19565845 806..910 98   Plus

BO08174.complete Sequence

1234 bp (1234 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631088

> BO08174.complete
GAAGTTATCAGTCGACATGAAGGAGATACGAACGGACGATCCCATAGCCA
CCGATCTAATCGGTGCCCTGCTAACGGGTCCCAGCGTGTACTCATCGCGC
CGCAGCTCGAATGACTCCATCATACGCACTGGCAGCTCCACGAGAACTGC
CGCCATTGTGCCCGCCAAAATGAAGTCCAATCCCATCATCATGGAACTAC
TTGACGAATCTCTCAGCTGGGACTTTGATATTTTCAAATTGGAGGAGATC
ACCGACTACCACCCGCTGCTCTACCTGGGCATGGAGATGTTCCGCCGCTT
CGACGTCTTTGCCACCCTGAACATCGATGAGAACGTGTGCAAGGCGTGGT
TGGCAGTGATTGAAGCCCACTACCGCAAGAGCAACACATATCACAACAGC
ACCCATGCCGCGGATGTGATGCAGGCCACTGGCGCTTTCATCACCCAACT
AACCAACAAGGATATGCTGGTGATGGATCGCATGGAGGAGGCGACTGCCT
TGATCGCCGCCGCCGCCCACGATGTGGATCATCCTGGTCGCTCATCCGCC
TTCTTGTGCAACTCCAACGACGCCCTGGCCGTTCTATACAATGATCTGAC
TGTGCTGGAGAACCATCACGCGGCAATCACCTTTAAGCTGACACTGGGCG
ACGACAAGATCAACATTTTCAAGAACCTGGACAAGGAGACATACAAGTCG
GCACGCAGCACCATCATTGACATGATCCTGGCCACCGAGATGACCCGCCA
CTTTGAGCACCTGGCCAAGTTCGTGAGCGTTTTTGGCGGCGAGGAGCCGC
GTGATCACAATCCCCAAACGGATGAGGAGACGTCCATACTCATGCGTCGC
ATGCTGATCAAAGTGGCCGATGTGAGCAATCCCGCCAGGCCGATGCAATT
CTGCATCGAGTGGGCCCGCCGGATAGCCGAGGAGTACTTCATGCAGACGG
ACGAGGAGAAGCAGCGCCACCTGCCCATCGTGATGCCGATGTTCGATCGG
GCCACCTGCAGCATACCAAAGAGCCAGATCGGCTTCATCGAATACATCAT
ACAGGACATGATGCACGCCTGGGAGAGCTTCATCGACATGCCACAGCTGA
TCACCTACATGCAGATCAACTACTCGCAATGGAAGAAGTACGACGAGCAG
GGCGTCAACACGCTGGCGGAGATCATGGCCAAGCAGCCACCGGTGGGCAA
GATGGCCAACTCCAAAGCAAGCTTTCTAGACCAT

BO08174.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
Pde8-RO 3153 CG45019-PO 1951..3150 17..1216 6000 100 Plus
Pde8-RK 2745 CG45019-PK 1543..2742 17..1216 6000 100 Plus
Pde8-RI 2745 CG45019-PI 1543..2742 17..1216 6000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
Pde8-RO 4895 CG45019-RO 2365..3564 17..1216 6000 100 Plus
Pde8-RK 5389 CG45019-RK 2032..3231 17..1216 6000 100 Plus
Pde8-RI 5562 CG45019-RI 2205..3404 17..1216 6000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23678218..23678489 806..1077 1360 100 Plus
2R 25286936 2R 23677403..23677654 174..425 1260 100 Plus
2R 25286936 2R 23677713..23677938 423..648 1130 100 Plus
2R 25286936 2R 23678001..23678159 647..805 795 100 Plus
2R 25286936 2R 23678547..23678686 1077..1216 700 100 Plus
2R 25286936 2R 23677248..23677347 76..175 500 100 Plus
2R 25286936 2R 23677129..23677189 17..77 305 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:37:21 has no hits.

BO08174.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:38 Download gff for BO08174.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RE 1504..2718 6..1217 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:41 Download gff for BO08174.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RE 2020..3235 6..1222 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:55 Download gff for BO08174.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RN 2318..3517 17..1218 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:38 Download gff for BO08174.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RE 2020..3235 6..1222 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:25 Download gff for BO08174.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RI 2205..3404 17..1218 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:25 Download gff for BO08174.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23677405..23677653 176..424 100 -> Plus
2R 23677715..23677937 425..647 100 -> Plus
2R 23678002..23678159 648..805 100 -> Plus
2R 23678218..23678488 806..1076 100 -> Plus
2R 23678547..23678686 1077..1218 98   Plus
2R 23677129..23677188 17..76 100 -> Plus
2R 23677249..23677347 77..175 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:55 Download gff for BO08174.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19564652..19564711 17..76 100 -> Plus
arm_2R 19564772..19564870 77..175 100 -> Plus
arm_2R 19564928..19565176 176..424 100 -> Plus
arm_2R 19565238..19565460 425..647 100 -> Plus
arm_2R 19565525..19565682 648..805 100 -> Plus
arm_2R 19565741..19566011 806..1076 100 -> Plus
arm_2R 19566070..19566209 1077..1218 98   Plus

BO08174.pep Sequence

Translation from 16 to 1234

> BO08174.pep
MKEIRTDDPIATDLIGALLTGPSVYSSRRSSNDSIIRTGSSTRTAAIVPA
KMKSNPIIMELLDESLSWDFDIFKLEEITDYHPLLYLGMEMFRRFDVFAT
LNIDENVCKAWLAVIEAHYRKSNTYHNSTHAADVMQATGAFITQLTNKDM
LVMDRMEEATALIAAAAHDVDHPGRSSAFLCNSNDALAVLYNDLTVLENH
HAAITFKLTLGDDKINIFKNLDKETYKSARSTIIDMILATEMTRHFEHLA
KFVSVFGGEEPRDHNPQTDEETSILMRRMLIKVADVSNPARPMQFCIEWA
RRIAEEYFMQTDEEKQRHLPIVMPMFDRATCSIPKSQIGFIEYIIQDMMH
AWESFIDMPQLITYMQINYSQWKKYDEQGVNTLAEIMAKQPPVGKMANSK
ASFLDH

BO08174.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
Pde8-PC 400 CG45019-PC 1..400 1..400 2074 100 Plus
Pde8-PD 805 CG45019-PD 406..805 1..400 2074 100 Plus
Pde8-PB 904 CG45019-PB 505..904 1..400 2074 100 Plus
Pde8-PE 905 CG45019-PE 506..905 1..400 2074 100 Plus
Pde8-PK 914 CG45019-PK 515..914 1..400 2074 100 Plus