Clone Sequence Records
BO08174.3prime Sequence
915 bp (828 high quality bases) assembled on 2006-01-06
> BO08174.3prime
ATGGTCTAGAAAGCTTGCTTTGGAGTTGGCCATCTTGCCCACCGGTGGCT
GCTTGGCCATGATCTCCGCCAGCGTGTTGACGCCCTGCTCGTCGTACTTC
TTCCATTGCGAGTAGTTGATCTGCATGTAGGTGATCAGCTGTGGCATGTC
GATGAAGCTCTCCCAGGCGTGCATCATGTCCTGTATGATGTATTCGATGA
AGCCGATCTGGCTCTTTGGTATGCTGCAGGTGGCCCGATCGAACATCGGC
ATCACGATGGGCAGGTGGCGCTGCTTCTCCTCGTCCGTCTGCATGAAGTA
CTCCTCGGCTATCCGGCGGGCCCACTCGATGCAGAATTGCATCGGCCTGG
CGGGATTGCTCACATCGGCCACTTTGATCAGCATGCGACGCATGAGTATG
GACGTCTCCTCATCCGTTTGGGGATTGTGATCACGCGGCTCCTCGCCGCC
AAAAACGCTCACGAACTTGGCCAGGTGCTCAAAGTGGCGGGTCATCTCGG
TGGCCAGGATCATGTCAATGATGGTGCTGCGTGCCGACTTGTATGTCTCC
TTGTCCAGGTTCTTGAAAATGTTGATCTTGTCGTCGCCCAGTGTCAGCTT
AAAGGTGATTGCCGCGTGATGGTTCTCCAGCACAGTCAGATCATTGTATA
GAACGGCCAGGGCGTCGTTGGAGTTGCACAAGAAGGCGGATGAGCGACCA
GGATGATCCACATCGTGGGCGGCGGCGGCGATCAAGGCAGTCGCCTCCTC
CATGCGATCCATCACCAGCATATCCTTGTTGGTTAGTTGGGTGATGAAAG
CGCCAGTGGCCTGCATCACATCCGCGGCATGGGTGCTGTTGTGATATGTG
TTGCTCTTGCGGTAGTGGGCTTCATCACTGCCAACCACGCCTTGCACACG
TTCTCATCGATGTTC
BO08174.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5411-PC | 1203 | Pde8-RC | 345..1200 | 874..19 | 4280 | 100 | Minus |
CG5411-PD | 2418 | Pde8-RD | 1560..2415 | 874..19 | 4280 | 100 | Minus |
CG5411-PE | 2718 | Pde8-RE | 1860..2715 | 874..19 | 4280 | 100 | Minus |
CG5411-PB | 2715 | Pde8-RB | 1857..2712 | 874..19 | 4280 | 100 | Minus |
CG5411-PA | 2745 | Pde8-RA | 1887..2742 | 874..19 | 4280 | 100 | Minus |
CG5411-PC | 1203 | Pde8-RC | 303..344 | 915..874 | 210 | 100 | Minus |
CG5411-PD | 2418 | Pde8-RD | 1518..1559 | 915..874 | 210 | 100 | Minus |
CG5411-PE | 2718 | Pde8-RE | 1818..1859 | 915..874 | 210 | 100 | Minus |
CG5411-PB | 2715 | Pde8-RB | 1815..1856 | 915..874 | 210 | 100 | Minus |
CG5411-PA | 2745 | Pde8-RA | 1845..1886 | 915..874 | 210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pde8-RO | 4895 | CG45019-RO | 2667..3564 | 915..19 | 4465 | 99.9 | Minus |
Pde8-RK | 5389 | CG45019-RK | 2334..3231 | 915..19 | 4465 | 99.9 | Minus |
Pde8-RI | 5562 | CG45019-RI | 2507..3404 | 915..19 | 4465 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:07:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23678218..23678489 | 429..158 | 1360 | 100 | Minus |
2R | 25286936 | 2R | 23677713..23677938 | 812..587 | 1130 | 100 | Minus |
2R | 25286936 | 2R | 23678001..23678159 | 588..430 | 795 | 100 | Minus |
2R | 25286936 | 2R | 23678547..23678686 | 158..19 | 700 | 100 | Minus |
2R | 25286936 | 2R | 23677548..23677654 | 915..810 | 485 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:07:50 has no hits.
BO08174.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:12 Download gff for
BO08174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5411-PB | 1815..2715 | 18..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:28 Download gff for
BO08174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5411-PD | 1518..2418 | 18..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:44 Download gff for
BO08174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pde8-RN | 2620..3521 | 13..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:18 Download gff for
BO08174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pde8-RI | 2507..3408 | 13..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:18 Download gff for
BO08174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23678547..23678690 | 13..158 | 97 | | Minus |
2R | 23677548..23677653 | 811..915 | 99 | -> | Minus |
2R | 23677715..23677937 | 588..810 | 100 | -> | Minus |
2R | 23678002..23678159 | 430..587 | 100 | -> | Minus |
2R | 23678218..23678488 | 159..429 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:44 Download gff for
BO08174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19565071..19565176 | 811..915 | 99 | -> | Minus |
arm_2R | 19565238..19565460 | 588..810 | 100 | -> | Minus |
arm_2R | 19565525..19565682 | 430..587 | 100 | -> | Minus |
arm_2R | 19565741..19566011 | 159..429 | 100 | -> | Minus |
arm_2R | 19566070..19566213 | 13..158 | 97 | | Minus |
BO08174.5prime Sequence
910 bp (822 high quality bases) assembled on 2006-01-06
> BO08174.5prime
GAAGTTATCAGTCGACATGAAGGAGATACGAACGGACGATCCCATAGCCA
CCGATCTAATCGGTGCCCTGCTAACGGGTCCCAGCGTGTACTCATCGCGC
CGCAGCTCGAATGACTCCATCATACGCACTGGCAGCTCCACGAGAACTGC
CGCCATTGTGCCCGCCAAAATGAAGTCCAATCCCATCATCATGGAACTAC
TTGACGAATCTCTCAGCTGGGACTTTGATATTTTCAAATTGGAGGAGATC
ACCGACTACCACCCGCTGCTCTACCTGGGCATGGAGATGTTCCGCCGCTT
CGACGTCTTTGCCACCCTGAACATCGATGAGAACGTGTGCAAGGCGTGGT
TGGCAGTGATTGAAGCCCACTACCGCAAGAGCAACACATATCACAACAGC
ACCCATGCCGCGGATGTGATGCAGGCCACTGGCGCTTTCATCACCCAACT
AACCAACAAGGATATGCTGGTGATGGATCGCATGGAGGAGGCGACTGCCT
TGATCGCCGCCGCCGCCCACGATGTGGATCATCCTGGTCGCTCATCCGCC
TTCTTGTGCAACTCCAACGACGCCCTGGCCGTTCTATACAATGATCTGAC
TGTGCTGGAGAACCATCACGCGGCAATCACCTTTAAGCTGACACTGGGCG
ACGACAAGATCAACATTTTCAAGAACCTGGACAAGGAGACATACAAGTCG
GCACGCAGCACCATCATTGACATGATCCTGGCCACCGAGATGACCCGCCA
CTTTGAGCACCTGGCCAAGTTCGTGAGCGTTTTTGGCGGCGAGGAGCCGC
GTGATCACAATCCCCAAACGGATGAGGAGACGTCCATACTCATGCGTCGC
ATGCTGGATCAAGTGGCCGATGTGAGCAATCCCGCCAGGCCGATGCAATT
CTGCATCGAG
BO08174.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:18:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5411-PC | 1203 | Pde8-RC | 1..840 | 17..856 | 4200 | 100 | Plus |
CG5411-PD | 2418 | Pde8-RD | 1216..2055 | 17..856 | 4200 | 100 | Plus |
CG5411-PE | 2718 | Pde8-RE | 1516..2355 | 17..856 | 4200 | 100 | Plus |
CG5411-PB | 2715 | Pde8-RB | 1513..2352 | 17..856 | 4200 | 100 | Plus |
CG5411-PA | 2745 | Pde8-RA | 1543..2382 | 17..856 | 4200 | 100 | Plus |
CG5411-PC | 1203 | Pde8-RC | 845..894 | 861..910 | 250 | 100 | Plus |
CG5411-PD | 2418 | Pde8-RD | 2060..2109 | 861..910 | 250 | 100 | Plus |
CG5411-PE | 2718 | Pde8-RE | 2360..2409 | 861..910 | 250 | 100 | Plus |
CG5411-PB | 2715 | Pde8-RB | 2357..2406 | 861..910 | 250 | 100 | Plus |
CG5411-PA | 2745 | Pde8-RA | 2387..2436 | 861..910 | 250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:39:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pde8-RO | 4895 | CG45019-RO | 2365..3258 | 17..910 | 4425 | 99.8 | Plus |
Pde8-RK | 5389 | CG45019-RK | 2032..2925 | 17..910 | 4425 | 99.8 | Plus |
Pde8-RI | 5562 | CG45019-RI | 2205..3098 | 17..910 | 4425 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:39:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23677403..23677654 | 174..425 | 1260 | 100 | Plus |
2R | 25286936 | 2R | 23677713..23677938 | 423..648 | 1130 | 100 | Plus |
2R | 25286936 | 2R | 23678001..23678159 | 647..805 | 795 | 100 | Plus |
2R | 25286936 | 2R | 23677248..23677347 | 76..175 | 500 | 100 | Plus |
2R | 25286936 | 2R | 23678218..23678322 | 806..910 | 465 | 96.2 | Plus |
2R | 25286936 | 2R | 23677129..23677189 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:39:40 has no hits.
BO08174.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:12 Download gff for
BO08174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5411-PB | 1501..2406 | 6..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:30 Download gff for
BO08174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5411-PD | 1204..2109 | 6..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:39:09 Download gff for
BO08174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pde8-RN | 2306..3211 | 6..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:37 Download gff for
BO08174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pde8-RI | 2193..3098 | 6..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:37 Download gff for
BO08174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23677117..23677188 | 6..76 | 94 | -> | Plus |
2R | 23677249..23677347 | 77..175 | 100 | -> | Plus |
2R | 23677405..23677653 | 176..424 | 100 | -> | Plus |
2R | 23677715..23677937 | 425..647 | 100 | -> | Plus |
2R | 23678002..23678159 | 648..805 | 100 | -> | Plus |
2R | 23678218..23678322 | 806..910 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:39:09 Download gff for
BO08174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19564640..19564711 | 6..76 | 94 | -> | Plus |
arm_2R | 19564772..19564870 | 77..175 | 100 | -> | Plus |
arm_2R | 19564928..19565176 | 176..424 | 100 | -> | Plus |
arm_2R | 19565238..19565460 | 425..647 | 100 | -> | Plus |
arm_2R | 19565525..19565682 | 648..805 | 100 | -> | Plus |
arm_2R | 19565741..19565845 | 806..910 | 98 | | Plus |
BO08174.complete Sequence
1234 bp (1234 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631088
> BO08174.complete
GAAGTTATCAGTCGACATGAAGGAGATACGAACGGACGATCCCATAGCCA
CCGATCTAATCGGTGCCCTGCTAACGGGTCCCAGCGTGTACTCATCGCGC
CGCAGCTCGAATGACTCCATCATACGCACTGGCAGCTCCACGAGAACTGC
CGCCATTGTGCCCGCCAAAATGAAGTCCAATCCCATCATCATGGAACTAC
TTGACGAATCTCTCAGCTGGGACTTTGATATTTTCAAATTGGAGGAGATC
ACCGACTACCACCCGCTGCTCTACCTGGGCATGGAGATGTTCCGCCGCTT
CGACGTCTTTGCCACCCTGAACATCGATGAGAACGTGTGCAAGGCGTGGT
TGGCAGTGATTGAAGCCCACTACCGCAAGAGCAACACATATCACAACAGC
ACCCATGCCGCGGATGTGATGCAGGCCACTGGCGCTTTCATCACCCAACT
AACCAACAAGGATATGCTGGTGATGGATCGCATGGAGGAGGCGACTGCCT
TGATCGCCGCCGCCGCCCACGATGTGGATCATCCTGGTCGCTCATCCGCC
TTCTTGTGCAACTCCAACGACGCCCTGGCCGTTCTATACAATGATCTGAC
TGTGCTGGAGAACCATCACGCGGCAATCACCTTTAAGCTGACACTGGGCG
ACGACAAGATCAACATTTTCAAGAACCTGGACAAGGAGACATACAAGTCG
GCACGCAGCACCATCATTGACATGATCCTGGCCACCGAGATGACCCGCCA
CTTTGAGCACCTGGCCAAGTTCGTGAGCGTTTTTGGCGGCGAGGAGCCGC
GTGATCACAATCCCCAAACGGATGAGGAGACGTCCATACTCATGCGTCGC
ATGCTGATCAAAGTGGCCGATGTGAGCAATCCCGCCAGGCCGATGCAATT
CTGCATCGAGTGGGCCCGCCGGATAGCCGAGGAGTACTTCATGCAGACGG
ACGAGGAGAAGCAGCGCCACCTGCCCATCGTGATGCCGATGTTCGATCGG
GCCACCTGCAGCATACCAAAGAGCCAGATCGGCTTCATCGAATACATCAT
ACAGGACATGATGCACGCCTGGGAGAGCTTCATCGACATGCCACAGCTGA
TCACCTACATGCAGATCAACTACTCGCAATGGAAGAAGTACGACGAGCAG
GGCGTCAACACGCTGGCGGAGATCATGGCCAAGCAGCCACCGGTGGGCAA
GATGGCCAACTCCAAAGCAAGCTTTCTAGACCAT
BO08174.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pde8-RO | 3153 | CG45019-PO | 1951..3150 | 17..1216 | 6000 | 100 | Plus |
Pde8-RK | 2745 | CG45019-PK | 1543..2742 | 17..1216 | 6000 | 100 | Plus |
Pde8-RI | 2745 | CG45019-PI | 1543..2742 | 17..1216 | 6000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pde8-RO | 4895 | CG45019-RO | 2365..3564 | 17..1216 | 6000 | 100 | Plus |
Pde8-RK | 5389 | CG45019-RK | 2032..3231 | 17..1216 | 6000 | 100 | Plus |
Pde8-RI | 5562 | CG45019-RI | 2205..3404 | 17..1216 | 6000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23678218..23678489 | 806..1077 | 1360 | 100 | Plus |
2R | 25286936 | 2R | 23677403..23677654 | 174..425 | 1260 | 100 | Plus |
2R | 25286936 | 2R | 23677713..23677938 | 423..648 | 1130 | 100 | Plus |
2R | 25286936 | 2R | 23678001..23678159 | 647..805 | 795 | 100 | Plus |
2R | 25286936 | 2R | 23678547..23678686 | 1077..1216 | 700 | 100 | Plus |
2R | 25286936 | 2R | 23677248..23677347 | 76..175 | 500 | 100 | Plus |
2R | 25286936 | 2R | 23677129..23677189 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:37:21 has no hits.
BO08174.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:38 Download gff for
BO08174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pde8-RE | 1504..2718 | 6..1217 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:41 Download gff for
BO08174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pde8-RE | 2020..3235 | 6..1222 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:55 Download gff for
BO08174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pde8-RN | 2318..3517 | 17..1218 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:38 Download gff for
BO08174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pde8-RE | 2020..3235 | 6..1222 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:25 Download gff for
BO08174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pde8-RI | 2205..3404 | 17..1218 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:25 Download gff for
BO08174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23677405..23677653 | 176..424 | 100 | -> | Plus |
2R | 23677715..23677937 | 425..647 | 100 | -> | Plus |
2R | 23678002..23678159 | 648..805 | 100 | -> | Plus |
2R | 23678218..23678488 | 806..1076 | 100 | -> | Plus |
2R | 23678547..23678686 | 1077..1218 | 98 | | Plus |
2R | 23677129..23677188 | 17..76 | 100 | -> | Plus |
2R | 23677249..23677347 | 77..175 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:55 Download gff for
BO08174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19564652..19564711 | 17..76 | 100 | -> | Plus |
arm_2R | 19564772..19564870 | 77..175 | 100 | -> | Plus |
arm_2R | 19564928..19565176 | 176..424 | 100 | -> | Plus |
arm_2R | 19565238..19565460 | 425..647 | 100 | -> | Plus |
arm_2R | 19565525..19565682 | 648..805 | 100 | -> | Plus |
arm_2R | 19565741..19566011 | 806..1076 | 100 | -> | Plus |
arm_2R | 19566070..19566209 | 1077..1218 | 98 | | Plus |
BO08174.pep Sequence
Translation from 16 to 1234
> BO08174.pep
MKEIRTDDPIATDLIGALLTGPSVYSSRRSSNDSIIRTGSSTRTAAIVPA
KMKSNPIIMELLDESLSWDFDIFKLEEITDYHPLLYLGMEMFRRFDVFAT
LNIDENVCKAWLAVIEAHYRKSNTYHNSTHAADVMQATGAFITQLTNKDM
LVMDRMEEATALIAAAAHDVDHPGRSSAFLCNSNDALAVLYNDLTVLENH
HAAITFKLTLGDDKINIFKNLDKETYKSARSTIIDMILATEMTRHFEHLA
KFVSVFGGEEPRDHNPQTDEETSILMRRMLIKVADVSNPARPMQFCIEWA
RRIAEEYFMQTDEEKQRHLPIVMPMFDRATCSIPKSQIGFIEYIIQDMMH
AWESFIDMPQLITYMQINYSQWKKYDEQGVNTLAEIMAKQPPVGKMANSK
ASFLDH
BO08174.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:44:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pde8-PC | 400 | CG45019-PC | 1..400 | 1..400 | 2074 | 100 | Plus |
Pde8-PD | 805 | CG45019-PD | 406..805 | 1..400 | 2074 | 100 | Plus |
Pde8-PB | 904 | CG45019-PB | 505..904 | 1..400 | 2074 | 100 | Plus |
Pde8-PE | 905 | CG45019-PE | 506..905 | 1..400 | 2074 | 100 | Plus |
Pde8-PK | 914 | CG45019-PK | 515..914 | 1..400 | 2074 | 100 | Plus |